Wall clock time and date at job start Wed Apr 1 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47078 * 264.99666 * 3 2 1 5 5 H 1.48497 * 109.47318 * 24.99956 * 3 2 1 6 6 H 1.48506 * 109.46988 * 144.99660 * 3 2 1 7 7 C 1.37872 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00318 * 185.26662 * 7 2 1 9 9 C 1.50698 * 119.99940 * 5.26760 * 7 2 1 10 10 O 1.42895 * 110.91810 * 60.55174 * 9 7 2 11 11 C 1.55162 * 111.00516 * 184.45341 * 9 7 2 12 12 C 1.54331 * 102.94097 * 153.57751 * 11 9 7 13 13 N 1.47023 * 107.27064 * 337.80662 * 12 11 9 14 14 C 1.34770 * 125.64731 * 178.98051 * 13 12 11 15 15 O 1.21346 * 120.00184 * 179.97438 * 14 13 12 16 16 C 1.49454 * 120.00172 * 359.95824 * 14 13 12 17 17 O 1.21346 * 119.99644 * 359.97438 * 16 14 13 18 18 N 1.34774 * 120.00122 * 180.02562 * 16 14 13 19 19 C 1.47422 * 125.64796 * 359.68550 * 18 16 14 20 20 C 1.54694 * 104.94243 * 204.07502 * 19 18 16 21 21 C 1.55157 * 101.67585 * 323.28084 * 20 19 18 22 22 C 1.47026 * 125.64872 * 179.97438 * 18 16 14 23 23 H 1.08999 * 109.88235 * 59.48080 * 22 18 16 24 24 C 1.50703 * 109.88033 * 298.32088 * 22 18 16 25 25 C 1.34853 * 125.89118 * 326.14112 * 24 22 18 26 26 C 1.40886 * 107.41764 * 179.88952 * 25 24 22 27 27 C 1.34849 * 107.41703 * 0.37989 * 26 25 24 28 28 N 1.36340 * 125.89111 * 146.45752 * 24 22 18 29 29 H 0.97000 * 125.63364 * 359.94972 * 28 24 22 30 30 C 1.47428 * 108.70366 * 358.94247 * 13 12 11 31 31 H 0.97004 * 119.99752 * 359.97438 * 1 2 3 32 32 H 0.96700 * 113.99985 * 290.66819 * 10 9 7 33 33 H 1.08995 * 110.72143 * 271.93706 * 11 9 7 34 34 H 1.08993 * 110.72021 * 35.03415 * 11 9 7 35 35 H 1.08991 * 109.88254 * 97.22471 * 12 11 9 36 36 H 1.08997 * 109.87784 * 218.23534 * 12 11 9 37 37 H 1.08995 * 110.36809 * 323.00657 * 19 18 16 38 38 H 1.09007 * 110.36745 * 85.33350 * 19 18 16 39 39 H 1.08997 * 111.10283 * 205.11089 * 20 19 18 40 40 H 1.09000 * 110.84449 * 81.33220 * 20 19 18 41 41 H 1.08998 * 110.71877 * 276.97039 * 21 20 19 42 42 H 1.09005 * 110.72056 * 153.69972 * 21 20 19 43 43 H 1.07997 * 126.28744 * 0.02562 * 25 24 22 44 44 H 1.08000 * 126.29492 * 180.16836 * 26 25 24 45 45 H 1.08002 * 125.89579 * 179.73873 * 27 26 25 46 46 H 1.09003 * 110.36561 * 265.28858 * 30 13 12 47 47 H 1.08992 * 110.36387 * 142.97048 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 -1.3947 5 1 1.3978 2.6809 0.5917 6 1 3.4899 1.4731 0.8032 7 6 2.0045 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0864 9 6 1.2559 -2.4964 -0.1187 10 8 0.5277 -2.5557 -1.3468 11 6 2.2186 -3.7057 0.0159 12 6 1.2974 -4.8233 0.5489 13 7 0.1432 -4.1713 1.1848 14 6 -0.9002 -4.8046 1.7563 15 8 -1.8015 -4.1621 2.2537 16 6 -0.9475 -6.2982 1.7772 17 8 -0.0466 -6.9407 1.2791 18 7 -1.9911 -6.9315 2.3483 19 6 -3.1452 -6.2778 2.9919 20 6 -3.6968 -7.3288 3.9839 21 6 -3.4841 -8.6476 3.1947 22 6 -2.1644 -8.3888 2.4378 23 1 -1.3308 -8.8282 2.9856 24 6 -2.2417 -8.9817 1.0545 25 6 -2.7899 -8.3935 -0.0282 26 6 -2.6488 -9.2856 -1.1095 27 6 -2.0274 -10.3884 -0.6445 28 7 -1.7750 -10.2077 0.6831 29 1 -1.3357 -10.8457 1.2669 30 6 0.3166 -2.7100 1.0945 31 1 -0.4850 0.8401 0.0004 32 1 -0.2220 -1.9463 -1.3894 33 1 2.6336 -3.9782 -0.9544 34 1 3.0154 -3.4871 0.7268 35 1 0.9605 -5.4509 -0.2760 36 1 1.8335 -5.4283 1.2800 37 1 -2.8252 -5.3829 3.5256 38 1 -3.9022 -6.0271 2.2487 39 1 -4.7546 -7.1606 4.1859 40 1 -3.1198 -7.3296 4.9087 41 1 -4.3031 -8.8146 2.4951 42 1 -3.3791 -9.4921 3.8759 43 1 -3.2502 -7.4171 -0.0608 44 1 -2.9806 -9.1185 -2.1236 45 1 -1.7737 -11.2640 -1.2237 46 1 0.7785 -2.3259 2.0041 47 1 -0.6435 -2.2241 0.9213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118247180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:22 Heat of formation + Delta-G solvation = -49.350070 kcal Electronic energy + Delta-G solvation = -31760.952825 eV Core-core repulsion = 27524.132971 eV Total energy + Delta-G solvation = -4236.819854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39353 -40.24633 -38.77112 -37.31202 -37.15119 -34.23726 -32.24480 -31.73877 -30.96974 -30.79805 -30.19648 -27.87770 -27.09013 -26.02500 -24.48247 -22.80124 -21.75650 -21.39209 -20.64687 -19.97720 -19.63551 -18.94548 -17.74177 -17.16156 -16.77876 -16.63440 -15.85441 -15.44608 -15.15912 -14.78703 -14.48831 -14.35135 -14.09192 -13.83668 -13.55066 -13.44482 -13.17202 -13.02251 -12.92946 -12.80672 -12.69543 -12.27426 -12.18165 -11.98000 -11.67293 -11.64219 -11.52124 -11.47094 -11.02040 -10.98635 -10.86643 -10.69088 -10.52205 -10.43840 -10.19275 -9.37349 -9.02134 -8.85461 -8.80691 -8.68054 -8.36288 -8.00195 -7.87689 -6.27350 -4.35974 1.85661 2.15475 2.54907 3.06381 3.22414 3.28191 3.29661 3.31639 3.65466 3.83155 4.26761 4.30926 4.44646 4.60863 4.71881 4.92688 4.99768 4.99847 5.14375 5.27321 5.49474 5.52232 5.52795 5.57414 5.66696 5.79662 5.81327 5.85170 5.87825 6.00276 6.09171 6.17212 6.25533 6.33895 6.37616 6.53569 6.74937 6.83761 6.87535 6.98414 7.11927 7.18272 7.29755 7.34037 7.54545 7.74207 7.85094 8.04765 8.09713 8.50479 8.67351 9.29416 9.36745 10.79955 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.002930 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.276271 B = 9552.638559 C =10349.948973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.578 6.578 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.575 5.575 14 C 0.512 3.488 15 O -0.534 6.534 16 C 0.526 3.474 17 O -0.508 6.508 18 N -0.587 5.587 19 C 0.099 3.901 20 C -0.135 4.135 21 C -0.122 4.122 22 C 0.208 3.792 23 H 0.079 0.921 24 C 0.012 3.988 25 C -0.176 4.176 26 C -0.198 4.198 27 C -0.014 4.014 28 N -0.552 5.552 29 H 0.410 0.590 30 C 0.093 3.907 31 H 0.270 0.730 32 H 0.378 0.622 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.162 0.838 46 H 0.067 0.933 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 -19.113 6.326 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.386 6.386 11 C -0.160 4.160 12 C -0.011 4.011 13 N -0.307 5.307 14 C 0.294 3.706 15 O -0.413 6.413 16 C 0.310 3.690 17 O -0.382 6.382 18 N -0.323 5.323 19 C -0.023 4.023 20 C -0.174 4.174 21 C -0.160 4.160 22 C 0.104 3.896 23 H 0.097 0.903 24 C -0.102 4.102 25 C -0.201 4.201 26 C -0.223 4.223 27 C -0.145 4.145 28 N -0.148 5.148 29 H 0.246 0.754 30 C -0.027 4.027 31 H 0.080 0.920 32 H 0.227 0.773 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.179 0.821 46 H 0.086 0.914 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.616 -19.523 6.252 21.541 hybrid contribution 0.233 1.001 0.232 1.054 sum -6.383 -18.522 6.484 20.636 Atomic orbital electron populations 1.69752 1.05998 1.27886 1.49386 1.25066 0.95028 0.99732 0.93276 0.86421 0.79689 0.82324 0.78461 1.20300 1.21115 1.19776 1.21432 0.93992 0.90088 1.51895 0.91465 1.19645 0.87068 0.91853 0.80607 1.86167 1.47845 1.65668 1.38910 1.22715 0.97488 0.94792 1.00980 1.22119 0.86468 0.95473 0.97003 1.48666 1.19371 1.10128 1.52491 1.19446 0.82830 0.87348 0.80973 1.90668 1.36698 1.67348 1.46558 1.20124 0.81392 0.88971 0.78517 1.90732 1.36237 1.67783 1.43401 1.48161 1.21539 1.05662 1.56949 1.22607 0.87406 0.96801 0.95520 1.22839 1.02222 0.94048 0.98246 1.22729 0.96004 0.98491 0.98812 1.19792 0.98527 0.80889 0.90408 0.90314 1.20318 1.05382 0.87847 0.96627 1.20568 1.06841 1.00403 0.92242 1.20890 1.07108 0.95011 0.99310 1.21743 1.07234 1.01607 0.83943 1.41774 1.47993 1.15297 1.09690 0.75407 1.23523 1.03087 0.75038 1.01084 0.92042 0.77342 0.90589 0.90406 0.91191 0.91916 0.87657 0.90930 0.89403 0.90497 0.89738 0.89912 0.85440 0.84889 0.82082 0.91427 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 10.80 55.43 0.60 -22.96 16 2 C 0.07 1.88 5.32 -17.82 -0.09 1.79 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.94 8.25 -34.44 -0.28 -14.23 16 8 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 9 C 0.25 6.07 0.86 -89.62 -0.08 5.99 16 10 O -0.58 -14.83 13.14 -35.23 -0.46 -15.29 16 11 C -0.12 -2.54 6.13 -24.89 -0.15 -2.69 16 12 C 0.11 2.24 5.49 -3.06 -0.02 2.22 16 13 N -0.57 -12.38 3.33 -171.03 -0.57 -12.95 16 14 C 0.51 10.49 7.88 -11.59 -0.09 10.40 16 15 O -0.53 -11.45 14.04 5.50 0.08 -11.37 16 16 C 0.53 9.47 7.53 -11.58 -0.09 9.39 16 17 O -0.51 -9.85 13.96 5.50 0.08 -9.78 16 18 N -0.59 -8.39 2.73 -164.96 -0.45 -8.84 16 19 C 0.10 1.20 6.04 -2.65 -0.02 1.19 16 20 C -0.14 -1.10 7.07 -24.70 -0.17 -1.28 16 21 C -0.12 -0.98 6.47 -24.90 -0.16 -1.14 16 22 C 0.21 2.38 3.37 -68.10 -0.23 2.15 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 C 0.01 0.15 5.34 -81.79 -0.44 -0.29 16 25 C -0.18 -2.53 10.21 -39.78 -0.41 -2.93 16 26 C -0.20 -2.57 10.86 -39.78 -0.43 -3.01 16 27 C -0.01 -0.15 11.94 -16.75 -0.20 -0.35 16 28 N -0.55 -5.74 6.07 -9.12 -0.06 -5.80 16 29 H 0.41 2.98 8.96 -40.82 -0.37 2.61 16 30 C 0.09 2.22 5.35 -2.53 -0.01 2.21 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.38 9.77 7.71 45.56 0.35 10.13 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16 35 H 0.07 1.44 7.58 -51.93 -0.39 1.05 16 36 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 37 H 0.11 1.48 6.17 -51.93 -0.32 1.16 16 38 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 44 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 45 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 47 H 0.09 2.40 7.27 -51.93 -0.38 2.02 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -31.03 381.47 -9.03 -40.06 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -6.10 Total: 16.47 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -2.87 Total: 9.41 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.48 Total: -50.55 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.31 Total: -36.44 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.03 -9.03 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118247180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.289 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds