Wall clock time and date at job start Wed Apr 1 2020 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47078 * 264.99666 * 3 2 1 5 5 H 1.48497 * 109.47318 * 24.99956 * 3 2 1 6 6 H 1.48506 * 109.46988 * 144.99660 * 3 2 1 7 7 C 1.37872 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00318 * 185.26662 * 7 2 1 9 9 C 1.50698 * 119.99940 * 5.26760 * 7 2 1 10 10 O 1.42895 * 110.91810 * 60.55174 * 9 7 2 11 11 C 1.55162 * 111.00516 * 184.45341 * 9 7 2 12 12 C 1.54331 * 102.94097 * 153.57751 * 11 9 7 13 13 N 1.47023 * 107.27064 * 337.80662 * 12 11 9 14 14 C 1.34770 * 125.64731 * 178.98051 * 13 12 11 15 15 O 1.21346 * 120.00184 * 179.97438 * 14 13 12 16 16 C 1.49454 * 120.00172 * 359.95824 * 14 13 12 17 17 O 1.21346 * 119.99644 * 359.97438 * 16 14 13 18 18 N 1.34774 * 120.00122 * 180.02562 * 16 14 13 19 19 C 1.47422 * 125.64796 * 359.68550 * 18 16 14 20 20 C 1.54694 * 104.94243 * 204.07502 * 19 18 16 21 21 C 1.55157 * 101.67585 * 323.28084 * 20 19 18 22 22 C 1.47026 * 125.64872 * 179.97438 * 18 16 14 23 23 H 1.08999 * 109.88235 * 59.48080 * 22 18 16 24 24 C 1.50703 * 109.88033 * 298.32088 * 22 18 16 25 25 C 1.34853 * 125.89118 * 326.14112 * 24 22 18 26 26 C 1.40886 * 107.41764 * 179.88952 * 25 24 22 27 27 C 1.34849 * 107.41703 * 0.37989 * 26 25 24 28 28 N 1.36340 * 125.89111 * 146.45752 * 24 22 18 29 29 H 0.97000 * 125.63364 * 359.94972 * 28 24 22 30 30 C 1.47428 * 108.70366 * 358.94247 * 13 12 11 31 31 H 0.97004 * 119.99752 * 359.97438 * 1 2 3 32 32 H 0.96700 * 113.99985 * 290.66819 * 10 9 7 33 33 H 1.08995 * 110.72143 * 271.93706 * 11 9 7 34 34 H 1.08993 * 110.72021 * 35.03415 * 11 9 7 35 35 H 1.08991 * 109.88254 * 97.22471 * 12 11 9 36 36 H 1.08997 * 109.87784 * 218.23534 * 12 11 9 37 37 H 1.08995 * 110.36809 * 323.00657 * 19 18 16 38 38 H 1.09007 * 110.36745 * 85.33350 * 19 18 16 39 39 H 1.08997 * 111.10283 * 205.11089 * 20 19 18 40 40 H 1.09000 * 110.84449 * 81.33220 * 20 19 18 41 41 H 1.08998 * 110.71877 * 276.97039 * 21 20 19 42 42 H 1.09005 * 110.72056 * 153.69972 * 21 20 19 43 43 H 1.07997 * 126.28744 * 0.02562 * 25 24 22 44 44 H 1.08000 * 126.29492 * 180.16836 * 26 25 24 45 45 H 1.08002 * 125.89579 * 179.73873 * 27 26 25 46 46 H 1.09003 * 110.36561 * 265.28858 * 30 13 12 47 47 H 1.08992 * 110.36387 * 142.97048 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 -1.3947 5 1 1.3978 2.6809 0.5917 6 1 3.4899 1.4731 0.8032 7 6 2.0045 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0864 9 6 1.2559 -2.4964 -0.1187 10 8 0.5277 -2.5557 -1.3468 11 6 2.2186 -3.7057 0.0159 12 6 1.2974 -4.8233 0.5489 13 7 0.1432 -4.1713 1.1848 14 6 -0.9002 -4.8046 1.7563 15 8 -1.8015 -4.1621 2.2537 16 6 -0.9475 -6.2982 1.7772 17 8 -0.0466 -6.9407 1.2791 18 7 -1.9911 -6.9315 2.3483 19 6 -3.1452 -6.2778 2.9919 20 6 -3.6968 -7.3288 3.9839 21 6 -3.4841 -8.6476 3.1947 22 6 -2.1644 -8.3888 2.4378 23 1 -1.3308 -8.8282 2.9856 24 6 -2.2417 -8.9817 1.0545 25 6 -2.7899 -8.3935 -0.0282 26 6 -2.6488 -9.2856 -1.1095 27 6 -2.0274 -10.3884 -0.6445 28 7 -1.7750 -10.2077 0.6831 29 1 -1.3357 -10.8457 1.2669 30 6 0.3166 -2.7100 1.0945 31 1 -0.4850 0.8401 0.0004 32 1 -0.2220 -1.9463 -1.3894 33 1 2.6336 -3.9782 -0.9544 34 1 3.0154 -3.4871 0.7268 35 1 0.9605 -5.4509 -0.2760 36 1 1.8335 -5.4283 1.2800 37 1 -2.8252 -5.3829 3.5256 38 1 -3.9022 -6.0271 2.2487 39 1 -4.7546 -7.1606 4.1859 40 1 -3.1198 -7.3296 4.9087 41 1 -4.3031 -8.8146 2.4951 42 1 -3.3791 -9.4921 3.8759 43 1 -3.2502 -7.4171 -0.0608 44 1 -2.9806 -9.1185 -2.1236 45 1 -1.7737 -11.2640 -1.2237 46 1 0.7785 -2.3259 2.0041 47 1 -0.6435 -2.2241 0.9213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118247180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:21 Heat of formation + Delta-G solvation = -71.154179 kcal Electronic energy + Delta-G solvation = -31761.898322 eV Core-core repulsion = 27524.132971 eV Total energy + Delta-G solvation = -4237.765351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41189 -41.62072 -40.20756 -38.88172 -38.55017 -36.09181 -34.26322 -32.78517 -31.96966 -31.87784 -31.72371 -29.71402 -27.99678 -27.77065 -26.01102 -24.27513 -22.96482 -22.33464 -21.55847 -21.53977 -21.04019 -20.23130 -19.10997 -18.85977 -18.16905 -17.98184 -17.28648 -17.06963 -16.89002 -16.29946 -16.13186 -15.49479 -15.30204 -14.92275 -14.76901 -14.71636 -14.63863 -14.38475 -14.31741 -14.21415 -13.87353 -13.63023 -13.52084 -13.33277 -13.22832 -12.91807 -12.83352 -12.71226 -12.57643 -12.43566 -12.39582 -12.23804 -12.12336 -11.92219 -11.66635 -11.24358 -10.71492 -10.53346 -10.31290 -10.03322 -9.76657 -9.63266 -8.92973 -8.24845 -6.41119 0.33818 1.04952 1.39532 1.44041 1.46235 1.54593 2.05588 2.10044 2.28594 2.40053 2.57802 3.00234 3.13750 3.55169 3.65550 3.75694 3.85058 4.01491 4.07176 4.13288 4.18559 4.28896 4.42508 4.50500 4.53435 4.62759 4.69302 4.72689 4.84928 4.86908 4.92353 4.96014 5.02481 5.05539 5.11133 5.18860 5.29280 5.31415 5.31903 5.38726 5.40360 5.73641 5.96019 6.05940 6.09250 6.18032 6.28293 6.54126 6.66891 6.80265 6.91800 7.24256 7.33691 8.80931 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.002930 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.276271 B = 9552.638559 C =10349.948973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.234 3.766 10 O -0.586 6.586 11 C -0.115 4.115 12 C 0.123 3.877 13 N -0.584 5.584 14 C 0.504 3.496 15 O -0.550 6.550 16 C 0.528 3.472 17 O -0.526 6.526 18 N -0.579 5.579 19 C 0.089 3.911 20 C -0.121 4.121 21 C -0.109 4.109 22 C 0.201 3.799 23 H 0.092 0.908 24 C 0.009 3.991 25 C -0.210 4.210 26 C -0.232 4.232 27 C 0.002 3.998 28 N -0.541 5.541 29 H 0.428 0.572 30 C 0.110 3.890 31 H 0.270 0.730 32 H 0.372 0.628 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.135 0.865 45 H 0.199 0.801 46 H 0.056 0.944 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -21.573 7.632 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.393 6.393 11 C -0.153 4.153 12 C 0.000 4.000 13 N -0.316 5.316 14 C 0.287 3.713 15 O -0.430 6.430 16 C 0.310 3.690 17 O -0.402 6.402 18 N -0.313 5.313 19 C -0.032 4.032 20 C -0.158 4.158 21 C -0.147 4.147 22 C 0.098 3.902 23 H 0.110 0.890 24 C -0.106 4.106 25 C -0.235 4.235 26 C -0.257 4.257 27 C -0.130 4.130 28 N -0.137 5.137 29 H 0.267 0.733 30 C -0.012 4.012 31 H 0.079 0.921 32 H 0.220 0.780 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.153 0.847 45 H 0.216 0.784 46 H 0.075 0.925 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.208 -22.036 7.590 24.119 hybrid contribution 0.012 1.740 -0.181 1.750 sum -6.196 -20.296 7.410 22.477 Atomic orbital electron populations 1.69867 1.07119 1.28463 1.49679 1.25801 0.95769 1.02741 0.92894 0.85459 0.78642 0.78498 0.78351 1.20198 1.20993 1.18988 1.21720 0.94279 0.91099 1.52270 0.91250 1.19865 0.87635 0.93074 0.80077 1.86159 1.47733 1.65478 1.39906 1.22723 0.97266 0.93345 1.01933 1.22077 0.85808 0.94977 0.97098 1.48700 1.20427 1.09246 1.53236 1.20108 0.82111 0.88960 0.80113 1.90654 1.37087 1.68294 1.46943 1.19529 0.82536 0.87483 0.79413 1.90707 1.37288 1.67467 1.44766 1.48239 1.20534 1.07470 1.55040 1.22744 0.86592 0.97719 0.96176 1.22826 1.03575 0.92178 0.97255 1.22752 0.93764 0.99430 0.98772 1.20197 1.01038 0.78541 0.90465 0.89037 1.20365 1.04991 0.88596 0.96604 1.20564 1.08718 1.00201 0.94041 1.21115 1.08981 0.96077 0.99485 1.22254 1.04991 1.01708 0.84004 1.41787 1.47180 1.14829 1.09932 0.73315 1.23073 1.01147 0.76532 1.00454 0.92098 0.78037 0.89848 0.88834 0.91953 0.89998 0.89774 0.91669 0.87020 0.89212 0.89858 0.86401 0.87919 0.84662 0.78421 0.92522 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.48 10.80 21.45 0.23 -49.25 16 2 C 0.03 1.54 5.32 84.65 0.45 1.99 16 3 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.56 -29.18 8.25 25.60 0.21 -28.97 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 9 C 0.23 11.63 0.86 -10.15 -0.01 11.62 16 10 O -0.59 -30.97 13.14 -148.98 -1.96 -32.93 16 11 C -0.11 -4.76 6.13 31.79 0.19 -4.56 16 12 C 0.12 4.90 5.49 86.73 0.48 5.38 16 13 N -0.58 -25.87 3.33 -813.37 -2.71 -28.58 16 14 C 0.50 21.34 7.88 87.27 0.69 22.03 16 15 O -0.55 -24.68 14.04 -3.24 -0.05 -24.73 16 16 C 0.53 19.21 7.53 87.27 0.66 19.86 16 17 O -0.53 -20.31 13.96 -3.24 -0.05 -20.35 16 18 N -0.58 -16.32 2.73 -794.17 -2.17 -18.50 16 19 C 0.09 2.16 6.04 86.78 0.52 2.69 16 20 C -0.12 -1.63 7.07 31.91 0.23 -1.40 16 21 C -0.11 -1.38 6.47 31.78 0.21 -1.18 16 22 C 0.20 4.18 3.37 44.59 0.15 4.33 16 23 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 24 C 0.01 0.21 5.34 41.08 0.22 0.43 16 25 C -0.21 -6.13 10.21 22.14 0.23 -5.90 16 26 C -0.23 -5.95 10.86 22.14 0.24 -5.71 16 27 C 0.00 0.04 11.94 83.21 0.99 1.03 16 28 N -0.54 -9.83 6.07 -182.76 -1.11 -10.94 16 29 H 0.43 4.70 8.96 -92.71 -0.83 3.87 16 30 C 0.11 5.44 5.35 86.85 0.47 5.90 16 31 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.37 20.15 7.71 -74.06 -0.57 19.58 16 33 H 0.08 3.30 8.14 -2.39 -0.02 3.29 16 34 H 0.09 3.55 8.03 -2.39 -0.02 3.53 16 35 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 36 H 0.08 2.96 7.69 -2.39 -0.02 2.94 16 37 H 0.08 2.42 6.17 -2.39 -0.01 2.40 16 38 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.14 7.84 -2.39 -0.02 1.12 16 42 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.10 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.06 2.87 8.03 -2.39 -0.02 2.85 16 47 H 0.06 3.32 7.27 -2.39 -0.02 3.31 16 Total: -1.00 -69.59 381.47 -0.25 -69.84 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: -0.39 Total: 44.09 kcal Atomic # 6 Polarization: 21.60 SS G_CDS: 5.92 Total: 27.52 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -5.76 Total: -107.26 kcal Atomic # 8 Polarization: -75.96 SS G_CDS: -2.05 Total: -78.01 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -69.59 -0.25 -69.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118247180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.314 kcal (2) G-P(sol) polarization free energy of solvation -69.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds