Wall clock time and date at job start Wed Apr 1 2020 04:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.42898 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.35974 * 116.99914 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.49856 * 0.02562 * 12 11 10 14 14 C 1.38784 * 118.45017 * 179.97438 * 13 12 11 15 15 C 1.38089 * 119.35242 * 0.02562 * 14 13 12 16 16 N 1.31955 * 120.95052 * 359.97438 * 15 14 13 17 17 C 1.32277 * 121.69771 * 359.70699 * 16 15 14 18 18 N 1.39578 * 119.72846 * 180.31233 * 17 16 15 19 19 C 1.34773 * 120.00191 * 0.26732 * 18 17 16 20 20 O 1.21276 * 119.99994 * 359.97438 * 19 18 17 21 21 C 1.50695 * 119.99969 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.47406 * 179.97438 * 21 19 18 23 23 H 1.08998 * 109.59956 * 304.99801 * 22 21 19 24 24 C 1.53344 * 109.60571 * 184.67630 * 22 21 19 25 25 C 1.53003 * 108.46216 * 172.88409 * 24 22 21 26 26 C 1.50180 * 110.00785 * 48.63488 * 25 24 22 27 27 O 1.21278 * 118.24785 * 162.54889 * 26 25 24 28 28 N 1.33358 * 123.50517 * 342.52741 * 26 25 24 29 29 C 1.45751 * 124.10495 * 2.24768 * 28 26 25 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 35 35 H 1.08001 * 120.77575 * 0.02562 * 13 12 11 36 36 H 1.07994 * 120.32339 * 179.97438 * 14 13 12 37 37 H 1.07992 * 119.52401 * 179.97438 * 15 14 13 38 38 H 0.97002 * 119.99426 * 180.26721 * 18 17 16 39 39 H 1.09003 * 109.47193 * 299.99950 * 21 19 18 40 40 H 1.09000 * 109.47515 * 59.99605 * 21 19 18 41 41 H 1.08999 * 109.67044 * 292.44498 * 24 22 21 42 42 H 1.09001 * 109.67657 * 52.97569 * 24 22 21 43 43 H 1.09004 * 109.25670 * 288.52847 * 25 24 22 44 44 H 1.09005 * 109.36601 * 168.80722 * 25 24 22 45 45 H 0.96998 * 117.94721 * 182.22585 * 28 26 25 46 46 H 1.09001 * 109.29935 * 220.58799 * 29 28 26 47 47 H 1.08997 * 109.30065 * 101.21607 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 8 1.5305 -4.8996 -0.0154 12 6 2.2710 -6.0400 -0.0209 13 6 3.6577 -5.9795 -0.0210 14 6 4.3715 -7.1697 -0.0261 15 6 3.6873 -8.3692 -0.0315 16 7 2.3681 -8.3981 -0.0313 17 6 1.6486 -7.2881 -0.0203 18 7 0.2551 -7.3666 -0.0139 19 6 -0.3521 -8.5698 -0.0136 20 8 0.3123 -9.5844 -0.0194 21 6 -1.8567 -8.6545 -0.0074 22 6 -2.2849 -10.1234 -0.0090 23 1 -1.8254 -10.6372 -0.8534 24 6 -3.8116 -10.2142 -0.1205 25 6 -4.1978 -11.6838 -0.2993 26 6 -3.4975 -12.5277 0.7268 27 8 -3.9229 -13.6433 0.9397 28 7 -2.4326 -12.1160 1.4160 29 6 -1.8455 -10.7874 1.2965 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5609 0.8844 32 1 0.6244 -2.5529 -0.8956 33 1 2.8718 -3.6005 -0.9002 34 1 2.8717 -3.6084 0.8798 35 1 4.1693 -5.0284 -0.0163 36 1 5.4513 -7.1579 -0.0268 37 1 4.2399 -9.2970 -0.0360 38 1 -0.2763 -6.5551 -0.0097 39 1 -2.2445 -8.1636 0.8852 40 1 -2.2522 -8.1602 -0.8947 41 1 -4.2696 -9.8254 0.7890 42 1 -4.1519 -9.6358 -0.9794 43 1 -3.9082 -12.0127 -1.2974 44 1 -5.2762 -11.7911 -0.1814 45 1 -2.0234 -12.7398 2.0359 46 1 -0.7588 -10.8712 1.3101 47 1 -2.1669 -10.1744 2.1385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143246963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:50 Heat of formation + Delta-G solvation = -81.474253 kcal Electronic energy + Delta-G solvation = -29535.616043 eV Core-core repulsion = 25297.403179 eV Total energy + Delta-G solvation = -4238.212863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09004 -40.52497 -39.38366 -37.88072 -36.93140 -34.89486 -33.71517 -33.52869 -31.96647 -31.53234 -30.62442 -29.25279 -27.15732 -25.47980 -24.85672 -23.71074 -22.91543 -22.23245 -21.07036 -20.28608 -19.40606 -18.44967 -17.62444 -17.43328 -17.23342 -16.43510 -16.22616 -15.97873 -15.82078 -15.73006 -15.31947 -14.96899 -14.67650 -14.61859 -14.41755 -14.03891 -13.88497 -13.67357 -13.52831 -13.28780 -12.90663 -12.48639 -12.45908 -12.10090 -11.99106 -11.90011 -11.62615 -11.37741 -11.23887 -11.10211 -11.05591 -10.77913 -10.72361 -10.31327 -10.11452 -9.98622 -9.82855 -9.45314 -9.32493 -9.27386 -9.08544 -8.57441 -7.74421 -6.23058 -4.27925 1.12335 1.37465 2.41200 2.58055 2.76671 3.05538 3.18140 3.25423 3.28259 3.46090 3.93152 4.11721 4.17864 4.26584 4.29589 4.39314 4.51471 4.70997 4.88642 4.92594 4.96919 5.03339 5.07859 5.14137 5.18024 5.20331 5.27737 5.38655 5.40214 5.43705 5.46823 5.70967 5.79576 5.83657 5.88590 5.99489 6.11715 6.27342 6.47731 6.51359 6.54709 7.09226 7.16611 7.28113 7.46562 7.57672 7.78939 7.96122 7.97014 8.09066 8.25457 8.77456 9.37344 10.88349 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.002044 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.110700 B =13695.204534 C =15531.227606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.068 3.932 13 C -0.149 4.149 14 C -0.159 4.159 15 C 0.074 3.926 16 N -0.443 5.443 17 C 0.326 3.674 18 N -0.652 5.652 19 C 0.502 3.498 20 O -0.480 6.480 21 C -0.135 4.135 22 C -0.088 4.088 23 H 0.092 0.908 24 C -0.121 4.121 25 C -0.134 4.134 26 C 0.518 3.482 27 O -0.566 6.566 28 N -0.715 5.715 29 C 0.106 3.894 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.425 0.575 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.399 0.601 46 H 0.099 0.901 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -17.695 0.056 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.016 3.984 13 C -0.175 4.175 14 C -0.180 4.180 15 C -0.083 4.083 16 N -0.158 5.158 17 C 0.093 3.907 18 N -0.300 5.300 19 C 0.288 3.712 20 O -0.351 6.351 21 C -0.175 4.175 22 C -0.107 4.107 23 H 0.110 0.890 24 C -0.159 4.159 25 C -0.174 4.174 26 C 0.305 3.695 27 O -0.446 6.446 28 N -0.366 5.366 29 C -0.018 4.018 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.234 0.766 46 H 0.117 0.883 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.777 -19.507 -0.004 19.704 hybrid contribution 1.207 2.332 0.234 2.636 sum -1.569 -17.175 0.231 17.248 Atomic orbital electron populations 1.69970 1.06097 1.27008 1.49554 1.24984 0.94929 0.99448 0.94772 0.86428 0.79986 0.83162 0.77801 1.19625 1.20786 1.20789 1.20983 0.93109 0.90106 1.52459 0.92281 1.19129 0.94125 0.88919 0.98879 1.23403 0.97263 0.80263 0.99862 1.86094 1.36269 1.12926 1.87543 1.19615 0.91149 0.87174 1.00419 1.21626 0.92299 1.00380 1.03219 1.21905 1.01239 0.92543 1.02299 1.22405 0.88830 0.97879 0.99143 1.67606 1.07849 1.26882 1.13469 1.17816 0.84926 0.86926 1.01019 1.43515 1.03783 1.10566 1.72087 1.20841 0.90510 0.83108 0.76708 1.90766 1.66076 1.33751 1.44502 1.21721 0.91915 0.98071 1.05800 1.21205 0.95753 0.94600 0.99121 0.89015 1.21752 0.94801 0.95676 1.03641 1.21612 1.01923 0.94776 0.99086 1.20219 0.79991 0.87398 0.81903 1.90755 1.64943 1.21602 1.67257 1.45466 1.30802 1.16299 1.44066 1.21677 1.00312 0.82735 0.97065 0.92671 0.95345 0.95342 0.92927 0.92931 0.83743 0.84793 0.82642 0.73733 0.87944 0.87582 0.90773 0.89917 0.88123 0.88024 0.76569 0.88282 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.53 -13.73 9.11 -34.44 -0.31 -14.04 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.63 5.34 -27.88 -0.15 0.48 16 10 C 0.07 1.24 4.70 37.16 0.17 1.41 16 11 O -0.32 -5.41 9.38 -19.66 -0.18 -5.60 16 12 C 0.07 1.05 6.72 -38.92 -0.26 0.78 16 13 C -0.15 -2.02 9.14 -39.17 -0.36 -2.38 16 14 C -0.16 -1.84 10.10 -39.43 -0.40 -2.23 16 15 C 0.07 0.92 11.17 -17.55 -0.20 0.73 16 16 N -0.44 -6.70 7.88 -12.22 -0.10 -6.80 16 17 C 0.33 4.86 7.45 -154.43 -1.15 3.71 16 18 N -0.65 -8.02 5.39 -11.29 -0.06 -8.09 16 19 C 0.50 5.58 7.55 -10.99 -0.08 5.49 16 20 O -0.48 -6.77 12.28 5.56 0.07 -6.70 16 21 C -0.13 -0.89 5.18 -27.89 -0.14 -1.03 16 22 C -0.09 -0.61 1.89 -90.48 -0.17 -0.78 16 23 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 24 C -0.12 -0.65 5.33 -26.55 -0.14 -0.79 16 25 C -0.13 -0.94 6.03 -28.13 -0.17 -1.11 16 26 C 0.52 5.43 7.72 -11.87 -0.09 5.34 16 27 O -0.57 -8.32 17.78 5.56 0.10 -8.22 16 28 N -0.72 -6.37 5.45 -61.39 -0.33 -6.70 16 29 C 0.11 0.83 6.11 -4.49 -0.03 0.81 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 34 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 35 H 0.14 1.83 6.44 -52.49 -0.34 1.50 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.42 4.58 8.05 -40.82 -0.33 4.25 16 39 H 0.10 0.51 8.11 -51.93 -0.42 0.08 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.40 3.36 8.80 -40.82 -0.36 3.00 16 46 H 0.10 0.96 6.19 -51.93 -0.32 0.64 16 47 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -34.06 389.48 -9.25 -43.31 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.75 Total: 3.98 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.58 Total: -2.07 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.24 Total: -45.77 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.02 Total: -20.53 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.06 -9.25 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143246963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.163 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds