Wall clock time and date at job start Wed Apr 1 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.42898 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.35974 * 116.99914 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.49856 * 0.02562 * 12 11 10 14 14 C 1.38784 * 118.45017 * 179.97438 * 13 12 11 15 15 C 1.38089 * 119.35242 * 0.02562 * 14 13 12 16 16 N 1.31955 * 120.95052 * 359.97438 * 15 14 13 17 17 C 1.32277 * 121.69771 * 359.70699 * 16 15 14 18 18 N 1.39578 * 119.72846 * 180.31233 * 17 16 15 19 19 C 1.34773 * 120.00191 * 0.26732 * 18 17 16 20 20 O 1.21276 * 119.99994 * 359.97438 * 19 18 17 21 21 C 1.50695 * 119.99969 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.47406 * 179.97438 * 21 19 18 23 23 H 1.08998 * 109.59956 * 304.99801 * 22 21 19 24 24 C 1.53344 * 109.60571 * 184.67630 * 22 21 19 25 25 C 1.53003 * 108.46216 * 172.88409 * 24 22 21 26 26 C 1.50180 * 110.00785 * 48.63488 * 25 24 22 27 27 O 1.21278 * 118.24785 * 162.54889 * 26 25 24 28 28 N 1.33358 * 123.50517 * 342.52741 * 26 25 24 29 29 C 1.45751 * 124.10495 * 2.24768 * 28 26 25 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 35 35 H 1.08001 * 120.77575 * 0.02562 * 13 12 11 36 36 H 1.07994 * 120.32339 * 179.97438 * 14 13 12 37 37 H 1.07992 * 119.52401 * 179.97438 * 15 14 13 38 38 H 0.97002 * 119.99426 * 180.26721 * 18 17 16 39 39 H 1.09003 * 109.47193 * 299.99950 * 21 19 18 40 40 H 1.09000 * 109.47515 * 59.99605 * 21 19 18 41 41 H 1.08999 * 109.67044 * 292.44498 * 24 22 21 42 42 H 1.09001 * 109.67657 * 52.97569 * 24 22 21 43 43 H 1.09004 * 109.25670 * 288.52847 * 25 24 22 44 44 H 1.09005 * 109.36601 * 168.80722 * 25 24 22 45 45 H 0.96998 * 117.94721 * 182.22585 * 28 26 25 46 46 H 1.09001 * 109.29935 * 220.58799 * 29 28 26 47 47 H 1.08997 * 109.30065 * 101.21607 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 8 1.5305 -4.8996 -0.0154 12 6 2.2710 -6.0400 -0.0209 13 6 3.6577 -5.9795 -0.0210 14 6 4.3715 -7.1697 -0.0261 15 6 3.6873 -8.3692 -0.0315 16 7 2.3681 -8.3981 -0.0313 17 6 1.6486 -7.2881 -0.0203 18 7 0.2551 -7.3666 -0.0139 19 6 -0.3521 -8.5698 -0.0136 20 8 0.3123 -9.5844 -0.0194 21 6 -1.8567 -8.6545 -0.0074 22 6 -2.2849 -10.1234 -0.0090 23 1 -1.8254 -10.6372 -0.8534 24 6 -3.8116 -10.2142 -0.1205 25 6 -4.1978 -11.6838 -0.2993 26 6 -3.4975 -12.5277 0.7268 27 8 -3.9229 -13.6433 0.9397 28 7 -2.4326 -12.1160 1.4160 29 6 -1.8455 -10.7874 1.2965 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5609 0.8844 32 1 0.6244 -2.5529 -0.8956 33 1 2.8718 -3.6005 -0.9002 34 1 2.8717 -3.6084 0.8798 35 1 4.1693 -5.0284 -0.0163 36 1 5.4513 -7.1579 -0.0268 37 1 4.2399 -9.2970 -0.0360 38 1 -0.2763 -6.5551 -0.0097 39 1 -2.2445 -8.1636 0.8852 40 1 -2.2522 -8.1602 -0.8947 41 1 -4.2696 -9.8254 0.7890 42 1 -4.1519 -9.6358 -0.9794 43 1 -3.9082 -12.0127 -1.2974 44 1 -5.2762 -11.7911 -0.1814 45 1 -2.0234 -12.7398 2.0359 46 1 -0.7588 -10.8712 1.3101 47 1 -2.1669 -10.1744 2.1385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143246963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:49 Heat of formation + Delta-G solvation = -104.691567 kcal Electronic energy + Delta-G solvation = -29536.622821 eV Core-core repulsion = 25297.403179 eV Total energy + Delta-G solvation = -4239.219642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.05635 -41.35028 -40.35233 -39.08643 -37.72645 -35.88442 -35.42245 -34.40073 -32.92204 -32.52980 -32.04352 -30.40944 -27.89325 -27.14901 -25.51084 -24.86817 -23.97474 -23.10340 -22.51315 -21.22413 -20.03035 -19.57447 -18.84975 -18.25549 -18.16233 -17.97843 -17.28493 -17.12337 -16.84248 -16.54974 -16.43427 -16.25105 -15.88437 -15.51145 -15.21259 -15.12681 -14.69560 -14.55466 -14.35895 -14.30392 -14.10038 -13.92998 -13.62509 -13.28070 -13.13523 -12.77767 -12.76652 -12.49341 -12.42996 -12.23595 -11.98277 -11.79125 -11.75274 -11.66605 -11.61150 -11.39340 -11.20483 -10.78565 -10.60078 -10.37409 -10.16761 -10.01400 -8.81705 -8.24862 -6.36617 0.12203 0.30774 1.42771 1.43851 1.55971 1.60704 1.73117 1.90482 2.13493 2.35054 2.45443 2.90617 3.10705 3.37270 3.55560 3.66724 3.72247 3.81897 3.87964 3.96436 4.10215 4.19206 4.31166 4.35407 4.39431 4.45378 4.49268 4.54729 4.65423 4.76686 4.77663 4.81699 4.93633 4.99432 4.99828 5.16174 5.17817 5.32316 5.33466 5.37757 5.53167 5.55670 5.75504 5.77218 6.09828 6.28313 6.34238 6.36287 6.78425 6.98942 7.17874 7.33265 7.33667 8.87721 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.002044 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.110700 B =13695.204534 C =15531.227606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.030 3.970 10 C 0.084 3.916 11 O -0.326 6.326 12 C 0.040 3.960 13 C -0.151 4.151 14 C -0.149 4.149 15 C 0.072 3.928 16 N -0.470 5.470 17 C 0.313 3.687 18 N -0.653 5.653 19 C 0.498 3.502 20 O -0.514 6.514 21 C -0.124 4.124 22 C -0.084 4.084 23 H 0.076 0.924 24 C -0.111 4.111 25 C -0.131 4.131 26 C 0.510 3.490 27 O -0.617 6.617 28 N -0.711 5.711 29 C 0.107 3.893 30 H 0.266 0.734 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.153 0.847 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.429 0.571 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.398 0.602 46 H 0.079 0.921 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 -16.955 -0.224 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.087 0.913 9 C -0.007 4.007 10 C 0.010 3.990 11 O -0.239 6.239 12 C -0.011 4.011 13 C -0.178 4.178 14 C -0.169 4.169 15 C -0.084 4.084 16 N -0.185 5.185 17 C 0.081 3.919 18 N -0.302 5.302 19 C 0.287 3.713 20 O -0.386 6.386 21 C -0.164 4.164 22 C -0.103 4.103 23 H 0.094 0.906 24 C -0.149 4.149 25 C -0.171 4.171 26 C 0.299 3.701 27 O -0.500 6.500 28 N -0.360 5.360 29 C -0.016 4.016 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.171 0.829 36 H 0.189 0.811 37 H 0.200 0.800 38 H 0.268 0.732 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.233 0.767 46 H 0.097 0.903 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.708 -18.750 -0.282 18.830 hybrid contribution 0.970 1.970 0.340 2.222 sum -0.738 -16.780 0.058 16.797 Atomic orbital electron populations 1.70094 1.07772 1.28014 1.50757 1.25926 0.95775 1.03314 0.94421 0.85347 0.79173 0.78515 0.77703 1.18272 1.20518 1.20528 1.21434 0.93835 0.91145 1.51744 0.91257 1.18941 0.94501 0.90833 0.96430 1.22931 0.95610 0.79750 1.00739 1.86015 1.36486 1.12930 1.88507 1.19784 0.92047 0.86451 1.02817 1.21892 0.91741 1.01675 1.02496 1.22245 1.02950 0.91230 1.00500 1.23008 0.88344 0.99545 0.97531 1.67691 1.09204 1.27085 1.14535 1.18061 0.86088 0.86762 1.00998 1.43692 1.03120 1.11365 1.71979 1.21668 0.92217 0.82119 0.75341 1.90749 1.67280 1.34663 1.45955 1.21777 0.88326 0.98211 1.08085 1.21163 0.96955 0.94454 0.97735 0.90577 1.21731 0.93185 0.94662 1.05276 1.21657 1.02048 0.95266 0.98092 1.20906 0.79939 0.87125 0.82115 1.90727 1.66474 1.23847 1.68972 1.45540 1.30288 1.16749 1.43430 1.21713 0.99069 0.82348 0.98488 0.92536 0.97810 0.97824 0.91995 0.91977 0.82900 0.81129 0.79959 0.73200 0.85572 0.85135 0.89738 0.87493 0.87325 0.87056 0.76723 0.90278 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.76 13.29 21.45 0.28 -52.47 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.97 41.05 29.54 68.60 2.03 43.08 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -28.23 9.11 25.60 0.23 -27.99 16 8 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.46 5.34 29.85 0.16 1.62 16 10 C 0.08 3.13 4.70 71.98 0.34 3.46 16 11 O -0.33 -11.23 9.38 -93.26 -0.88 -12.10 16 12 C 0.04 1.20 6.72 22.70 0.15 1.36 16 13 C -0.15 -3.87 9.14 22.53 0.21 -3.67 16 14 C -0.15 -3.04 10.10 22.37 0.23 -2.82 16 15 C 0.07 1.67 11.17 84.64 0.95 2.61 16 16 N -0.47 -13.91 7.88 -192.59 -1.52 -15.42 16 17 C 0.31 9.28 7.45 132.98 0.99 10.27 16 18 N -0.65 -15.93 5.39 -308.04 -1.66 -17.59 16 19 C 0.50 10.75 7.55 87.66 0.66 11.41 16 20 O -0.51 -14.54 12.28 -3.02 -0.04 -14.57 16 21 C -0.12 -1.38 5.18 29.85 0.15 -1.22 16 22 C -0.08 -1.02 1.89 -10.71 -0.02 -1.04 16 23 H 0.08 1.20 7.94 -2.39 -0.02 1.19 16 24 C -0.11 -0.89 5.33 30.71 0.16 -0.73 16 25 C -0.13 -1.65 6.03 29.69 0.18 -1.47 16 26 C 0.51 10.68 7.72 87.71 0.68 11.36 16 27 O -0.62 -18.68 17.78 -3.02 -0.05 -18.73 16 28 N -0.71 -12.70 5.45 -467.32 -2.55 -15.25 16 29 C 0.11 1.62 6.11 86.49 0.53 2.15 16 30 H 0.27 14.18 8.31 -92.70 -0.77 13.40 16 31 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 2.16 7.70 -2.38 -0.02 2.15 16 34 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 35 H 0.15 3.57 6.44 -2.91 -0.02 3.55 16 36 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.43 9.19 8.05 -92.71 -0.75 8.45 16 39 H 0.13 0.87 8.11 -2.39 -0.02 0.85 16 40 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.56 8.13 -2.39 -0.02 0.54 16 42 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.40 7.00 8.80 -92.71 -0.82 6.19 16 46 H 0.08 1.57 6.19 -2.39 -0.01 1.55 16 47 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 Total: -1.00 -76.25 389.48 1.13 -75.11 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.54 Total: 21.95 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.06 Total: 6.01 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -5.44 Total: -100.74 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.97 Total: -45.41 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -76.25 1.13 -75.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143246963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.578 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds