Wall clock time and date at job start Wed Apr 1 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99603 * 2 1 4 4 H 1.48493 * 109.47345 * 269.99769 * 3 2 1 5 5 H 1.48497 * 109.47437 * 30.00415 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00152 * 3 2 1 7 7 C 1.38947 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00150 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00224 * 179.97438 * 7 2 1 10 10 C 1.34772 * 120.00252 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00227 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99789 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46859 * 174.53032 * 12 10 9 14 14 C 1.46270 * 110.99711 * 65.06016 * 13 12 10 15 15 C 1.47542 * 114.37335 * 148.55823 * 14 13 12 16 16 C 1.54944 * 109.74036 * 62.21397 * 15 14 13 17 17 N 1.44680 * 109.52132 * 290.52118 * 16 15 14 18 18 C 1.34772 * 118.54828 * 269.07992 * 17 16 15 19 19 O 1.21773 * 120.00408 * 185.18363 * 18 17 16 20 20 C 1.41557 * 119.99976 * 5.18869 * 18 17 16 21 21 C 1.35622 * 120.00064 * 185.26946 * 20 18 17 22 22 C 1.41606 * 120.00291 * 180.02562 * 21 20 18 23 23 C 1.37944 * 126.10467 * 179.97438 * 22 21 20 24 24 C 1.40312 * 106.52655 * 180.02562 * 23 22 21 25 25 C 1.35153 * 107.20705 * 0.02562 * 24 23 22 26 26 O 1.34018 * 109.03128 * 0.23648 * 25 24 23 27 27 C 1.47777 * 122.90198 * 89.35303 * 17 16 15 28 28 C 1.44757 * 111.00247 * 301.56654 * 13 12 10 29 29 H 0.96993 * 120.00055 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99498 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47144 * 54.53632 * 12 10 9 32 32 H 1.08995 * 109.47532 * 294.52850 * 12 10 9 33 33 H 1.08996 * 108.50339 * 27.28737 * 14 13 12 34 34 H 1.08997 * 108.37930 * 269.73261 * 14 13 12 35 35 H 1.09008 * 109.42417 * 302.13224 * 15 14 13 36 36 H 1.09001 * 109.42806 * 182.30277 * 15 14 13 37 37 H 1.08999 * 109.46131 * 170.50413 * 16 15 14 38 38 H 1.08996 * 109.45206 * 50.53210 * 16 15 14 39 39 H 1.07997 * 119.99784 * 5.27158 * 20 18 17 40 40 H 1.08005 * 119.99889 * 0.02562 * 21 20 18 41 41 H 1.07999 * 126.73679 * 0.02562 * 23 22 21 42 42 H 1.08009 * 126.39608 * 180.02562 * 24 23 22 43 43 H 1.08005 * 125.48324 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.06042 * 78.37450 * 27 17 16 45 45 H 1.09004 * 109.06098 * 197.29707 * 27 17 16 46 46 H 1.08999 * 109.44031 * 337.92185 * 28 13 12 47 47 H 1.09001 * 109.44039 * 97.79453 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4209 0.0009 12 6 5.5608 -2.3704 0.0000 13 7 6.0505 -3.7490 0.1320 14 6 5.6824 -4.5500 -1.0352 15 6 6.6486 -5.6123 -1.3740 16 6 6.7452 -6.6243 -0.2046 17 7 7.3942 -5.9963 0.9258 18 6 8.7335 -6.0969 1.0371 19 8 9.2970 -5.6610 2.0247 20 6 9.4854 -6.7092 0.0058 21 6 10.8178 -6.9069 0.1637 22 6 11.5701 -7.5189 -0.8681 23 6 12.9245 -7.7792 -0.8418 24 6 13.2378 -8.3884 -2.0663 25 6 12.0904 -8.4737 -2.7755 26 8 11.0912 -7.9455 -2.0553 27 6 6.6527 -5.2546 1.9669 28 6 5.5565 -4.3610 1.3473 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0004 31 1 5.9241 -1.7741 0.8371 32 1 5.9242 -1.9437 -0.9348 33 1 5.5837 -3.8856 -1.8935 34 1 4.7138 -5.0117 -0.8435 35 1 7.6283 -5.1683 -1.5510 36 1 6.3178 -6.1295 -2.2746 37 1 7.3255 -7.4909 -0.5213 38 1 5.7434 -6.9434 0.0830 39 1 8.9980 -7.0189 -0.9069 40 1 11.3051 -6.5975 1.0766 41 1 13.6094 -7.5576 -0.0366 42 1 14.2136 -8.7261 -2.3830 43 1 11.9950 -8.8954 -3.7652 44 1 6.1920 -5.9668 2.6514 45 1 7.3505 -4.6285 2.5231 46 1 5.2781 -3.5829 2.0581 47 1 4.6827 -4.9706 1.1173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194666848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:35 Heat of formation + Delta-G solvation = -7.777509 kcal Electronic energy + Delta-G solvation = -30307.108170 eV Core-core repulsion = 26072.091038 eV Total energy + Delta-G solvation = -4235.017133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.89549 -40.48256 -39.18535 -37.30971 -35.04169 -34.49149 -33.84599 -33.40903 -32.61862 -31.77335 -29.99610 -28.79247 -26.66158 -25.76406 -24.61324 -23.77518 -22.29583 -21.81550 -20.68610 -20.32248 -19.41870 -18.61403 -18.25297 -18.07436 -17.03763 -16.56333 -16.43290 -15.96814 -15.67657 -15.18147 -15.03447 -14.92032 -14.55437 -14.33467 -13.98764 -13.61026 -13.41601 -13.35831 -13.17735 -13.05376 -12.95658 -12.65288 -12.54711 -12.34472 -12.18711 -11.92040 -11.53958 -11.31501 -11.27254 -10.98920 -10.93813 -10.70830 -10.64224 -10.39925 -10.27071 -10.06437 -9.82928 -9.62130 -9.24673 -8.58036 -8.25701 -8.22747 -7.69837 -6.38800 -3.90226 0.18483 1.79790 2.38810 2.59183 2.98596 3.02822 3.10670 3.11418 3.39640 3.62849 4.04165 4.13248 4.35631 4.54537 4.58124 4.61257 4.79757 4.88932 4.98285 4.99805 5.14269 5.26821 5.28814 5.35331 5.36712 5.39511 5.53138 5.67086 5.70789 5.73948 5.78883 5.83143 5.84930 5.89557 5.90347 5.97320 6.04356 6.10474 6.20423 6.35906 6.50881 6.65411 6.69553 7.25308 7.40953 7.46049 7.49663 8.06381 8.22343 8.50093 8.86484 9.34592 9.72254 10.73963 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002024 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.896945 B =13832.172750 C =14030.994262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.119 0.881 9 N -0.584 5.584 10 C 0.414 3.586 11 O -0.579 6.579 12 C 0.042 3.958 13 N -0.507 5.507 14 C 0.052 3.948 15 C -0.133 4.133 16 C 0.108 3.892 17 N -0.584 5.584 18 C 0.546 3.454 19 O -0.554 6.554 20 C -0.196 4.196 21 C -0.002 4.002 22 C -0.004 4.004 23 C -0.169 4.169 24 C -0.219 4.219 25 C -0.023 4.023 26 O -0.165 6.165 27 C 0.121 3.879 28 C 0.046 3.954 29 H 0.274 0.726 30 H 0.371 0.629 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.206 0.794 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.955 -14.754 -4.131 28.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.136 0.864 9 N -0.222 5.222 10 C 0.200 3.800 11 O -0.464 6.464 12 C -0.090 4.090 13 N -0.229 5.229 14 C -0.076 4.076 15 C -0.172 4.172 16 C -0.016 4.016 17 N -0.315 5.315 18 C 0.338 3.662 19 O -0.435 6.435 20 C -0.217 4.217 21 C -0.022 4.022 22 C -0.053 4.053 23 C -0.188 4.188 24 C -0.238 4.238 25 C -0.092 4.092 26 O -0.060 6.060 27 C -0.002 4.002 28 C -0.083 4.083 29 H 0.085 0.915 30 H 0.204 0.796 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.223 0.777 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.755 -15.056 -3.667 28.362 hybrid contribution -0.282 1.467 -0.316 1.526 sum 23.473 -13.589 -3.983 27.413 Atomic orbital electron populations 1.69623 1.05705 1.27648 1.48801 1.25077 0.95519 0.98119 0.97407 0.86663 0.79840 0.83908 0.78966 1.19570 1.20099 1.19381 1.19435 0.79420 0.96551 1.48239 0.86381 1.42369 1.07619 1.06486 1.65741 1.21006 0.89916 0.84633 0.84446 1.90518 1.69899 1.30675 1.55277 1.22276 0.92050 0.91201 1.03478 1.61268 1.57775 1.01207 1.02617 1.20970 0.97937 0.95685 0.92983 1.21485 1.01130 0.97016 0.97564 1.21688 0.98733 0.94883 0.86263 1.47453 1.06343 1.52642 1.25053 1.16991 0.82454 0.79989 0.86766 1.90798 1.70393 1.50009 1.32338 1.22333 0.95198 1.03394 1.00767 1.20664 0.93491 0.92858 0.95189 1.19927 0.93082 1.05607 0.86667 1.22363 0.94316 1.02621 0.99513 1.21791 0.99875 1.06450 0.95657 1.24322 0.85642 1.01026 0.98196 1.84113 1.37450 1.59625 1.24835 1.22110 0.94760 0.94375 0.88926 1.22399 0.95392 0.98088 0.92433 0.91527 0.79584 0.89237 0.89220 0.92241 0.91797 0.91351 0.90453 0.90460 0.90260 0.84856 0.82365 0.82665 0.82990 0.77743 0.91940 0.89349 0.90602 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.96 55.50 0.77 -24.53 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.49 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 9 N -0.58 -13.49 5.09 -10.96 -0.06 -13.54 16 10 C 0.41 8.87 7.06 -10.99 -0.08 8.79 16 11 O -0.58 -14.16 12.14 5.55 0.07 -14.10 16 12 C 0.04 0.68 5.49 -4.97 -0.03 0.66 16 13 N -0.51 -7.88 4.38 -240.79 -1.05 -8.93 16 14 C 0.05 0.77 4.03 -6.80 -0.03 0.74 16 15 C -0.13 -1.50 5.82 -28.34 -0.16 -1.67 16 16 C 0.11 1.16 5.04 -3.99 -0.02 1.14 16 17 N -0.58 -7.53 2.53 -175.41 -0.44 -7.98 16 18 C 0.55 7.46 7.38 -15.00 -0.11 7.35 16 19 O -0.55 -9.22 15.43 5.12 0.08 -9.14 16 20 C -0.20 -2.15 8.34 -39.25 -0.33 -2.48 16 21 C 0.00 -0.02 9.39 -39.23 -0.37 -0.39 16 22 C 0.00 -0.03 6.84 -38.41 -0.26 -0.30 16 23 C -0.17 -1.32 10.90 -38.91 -0.42 -1.74 16 24 C -0.22 -1.43 10.87 -39.90 -0.43 -1.86 16 25 C -0.02 -0.15 12.06 29.63 0.36 0.21 16 26 O -0.16 -1.50 10.18 4.70 0.05 -1.45 16 27 C 0.12 1.66 6.46 -2.60 -0.02 1.64 16 28 C 0.05 0.72 4.25 -4.24 -0.02 0.70 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 31 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 32 H 0.09 1.32 7.90 -51.93 -0.41 0.91 16 33 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 34 H 0.06 1.11 5.84 -51.93 -0.30 0.80 16 35 H 0.07 0.80 7.99 -51.92 -0.41 0.39 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.67 6.17 -51.93 -0.32 0.35 16 38 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.13 1.28 5.71 -52.49 -0.30 0.98 16 40 H 0.16 1.53 7.47 -52.48 -0.39 1.14 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.15 0.64 8.06 -52.48 -0.42 0.21 16 43 H 0.21 0.52 8.06 -52.48 -0.42 0.10 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.31 7.03 -51.93 -0.36 0.95 16 46 H 0.08 1.23 7.46 -51.93 -0.39 0.84 16 47 H 0.07 1.16 6.19 -51.93 -0.32 0.84 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -33.98 379.13 -8.10 -42.08 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -6.35 Total: 12.24 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.17 Total: 5.20 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.78 Total: -54.98 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.19 Total: -24.68 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.98 -8.10 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194666848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.305 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds