Wall clock time and date at job start Wed Apr 1 2020 04:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99603 * 2 1 4 4 H 1.48493 * 109.47345 * 269.99769 * 3 2 1 5 5 H 1.48497 * 109.47437 * 30.00415 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00152 * 3 2 1 7 7 C 1.38947 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00150 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00224 * 179.97438 * 7 2 1 10 10 C 1.34772 * 120.00252 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00227 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99789 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46859 * 174.53032 * 12 10 9 14 14 C 1.46270 * 110.99711 * 65.06016 * 13 12 10 15 15 C 1.47542 * 114.37335 * 148.55823 * 14 13 12 16 16 C 1.54944 * 109.74036 * 62.21397 * 15 14 13 17 17 N 1.44680 * 109.52132 * 290.52118 * 16 15 14 18 18 C 1.34772 * 118.54828 * 269.07992 * 17 16 15 19 19 O 1.21773 * 120.00408 * 185.18363 * 18 17 16 20 20 C 1.41557 * 119.99976 * 5.18869 * 18 17 16 21 21 C 1.35622 * 120.00064 * 185.26946 * 20 18 17 22 22 C 1.41606 * 120.00291 * 180.02562 * 21 20 18 23 23 C 1.37944 * 126.10467 * 179.97438 * 22 21 20 24 24 C 1.40312 * 106.52655 * 180.02562 * 23 22 21 25 25 C 1.35153 * 107.20705 * 0.02562 * 24 23 22 26 26 O 1.34018 * 109.03128 * 0.23648 * 25 24 23 27 27 C 1.47777 * 122.90198 * 89.35303 * 17 16 15 28 28 C 1.44757 * 111.00247 * 301.56654 * 13 12 10 29 29 H 0.96993 * 120.00055 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99498 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47144 * 54.53632 * 12 10 9 32 32 H 1.08995 * 109.47532 * 294.52850 * 12 10 9 33 33 H 1.08996 * 108.50339 * 27.28737 * 14 13 12 34 34 H 1.08997 * 108.37930 * 269.73261 * 14 13 12 35 35 H 1.09008 * 109.42417 * 302.13224 * 15 14 13 36 36 H 1.09001 * 109.42806 * 182.30277 * 15 14 13 37 37 H 1.08999 * 109.46131 * 170.50413 * 16 15 14 38 38 H 1.08996 * 109.45206 * 50.53210 * 16 15 14 39 39 H 1.07997 * 119.99784 * 5.27158 * 20 18 17 40 40 H 1.08005 * 119.99889 * 0.02562 * 21 20 18 41 41 H 1.07999 * 126.73679 * 0.02562 * 23 22 21 42 42 H 1.08009 * 126.39608 * 180.02562 * 24 23 22 43 43 H 1.08005 * 125.48324 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.06042 * 78.37450 * 27 17 16 45 45 H 1.09004 * 109.06098 * 197.29707 * 27 17 16 46 46 H 1.08999 * 109.44031 * 337.92185 * 28 13 12 47 47 H 1.09001 * 109.44039 * 97.79453 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4209 0.0009 12 6 5.5608 -2.3704 0.0000 13 7 6.0505 -3.7490 0.1320 14 6 5.6824 -4.5500 -1.0352 15 6 6.6486 -5.6123 -1.3740 16 6 6.7452 -6.6243 -0.2046 17 7 7.3942 -5.9963 0.9258 18 6 8.7335 -6.0969 1.0371 19 8 9.2970 -5.6610 2.0247 20 6 9.4854 -6.7092 0.0058 21 6 10.8178 -6.9069 0.1637 22 6 11.5701 -7.5189 -0.8681 23 6 12.9245 -7.7792 -0.8418 24 6 13.2378 -8.3884 -2.0663 25 6 12.0904 -8.4737 -2.7755 26 8 11.0912 -7.9455 -2.0553 27 6 6.6527 -5.2546 1.9669 28 6 5.5565 -4.3610 1.3473 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0004 31 1 5.9241 -1.7741 0.8371 32 1 5.9242 -1.9437 -0.9348 33 1 5.5837 -3.8856 -1.8935 34 1 4.7138 -5.0117 -0.8435 35 1 7.6283 -5.1683 -1.5510 36 1 6.3178 -6.1295 -2.2746 37 1 7.3255 -7.4909 -0.5213 38 1 5.7434 -6.9434 0.0830 39 1 8.9980 -7.0189 -0.9069 40 1 11.3051 -6.5975 1.0766 41 1 13.6094 -7.5576 -0.0366 42 1 14.2136 -8.7261 -2.3830 43 1 11.9950 -8.8954 -3.7652 44 1 6.1920 -5.9668 2.6514 45 1 7.3505 -4.6285 2.5231 46 1 5.2781 -3.5829 2.0581 47 1 4.6827 -4.9706 1.1173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194666848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:34 Heat of formation + Delta-G solvation = -32.362531 kcal Electronic energy + Delta-G solvation = -30308.174257 eV Core-core repulsion = 26072.091038 eV Total energy + Delta-G solvation = -4236.083219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.45691 -41.61298 -40.66764 -38.69979 -36.40338 -35.63591 -35.26271 -33.98741 -33.80883 -33.65251 -31.09802 -29.68665 -28.01182 -26.99459 -25.83590 -25.07176 -22.94694 -22.61638 -22.00339 -21.27542 -21.05282 -20.11121 -19.49445 -18.85092 -17.97274 -17.65875 -17.49066 -17.03479 -16.94977 -16.61821 -16.34985 -15.93633 -15.69986 -15.54090 -15.39001 -15.14324 -14.61806 -14.60740 -14.24637 -13.95867 -13.87624 -13.70233 -13.65521 -13.58349 -13.23581 -13.01123 -12.98896 -12.67354 -12.44445 -12.40761 -12.17566 -12.02874 -11.89419 -11.66493 -11.62422 -11.42987 -10.94410 -10.89146 -10.80409 -10.26550 -9.59823 -9.18491 -8.88778 -8.44720 -6.04936 -0.53860 1.20680 1.28652 1.32357 1.41791 1.75340 1.89348 2.06098 2.12839 2.19826 2.48577 2.87206 2.95689 3.12534 3.64555 3.86723 3.99531 4.00280 4.03567 4.06194 4.10951 4.16591 4.23544 4.26578 4.36250 4.49672 4.56892 4.67443 4.70392 4.71769 4.79369 4.81551 4.88338 4.93745 5.02856 5.08155 5.08295 5.15081 5.26973 5.38743 5.49778 5.57849 5.63008 5.90133 5.98534 6.12215 6.12937 6.48525 6.54708 6.84636 7.21708 7.35901 7.90328 8.72571 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002024 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.896945 B =13832.172750 C =14030.994262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.962 3.038 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.233 1.233 7 C -0.326 4.326 8 H 0.056 0.944 9 N -0.589 5.589 10 C 0.419 3.581 11 O -0.613 6.613 12 C 0.049 3.951 13 N -0.501 5.501 14 C 0.056 3.944 15 C -0.124 4.124 16 C 0.108 3.892 17 N -0.587 5.587 18 C 0.546 3.454 19 O -0.594 6.594 20 C -0.220 4.220 21 C 0.021 3.979 22 C -0.041 4.041 23 C -0.160 4.160 24 C -0.232 4.232 25 C -0.011 4.011 26 O -0.180 6.180 27 C 0.129 3.871 28 C 0.054 3.946 29 H 0.279 0.721 30 H 0.389 0.611 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.243 0.757 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.999 -14.573 -5.626 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.156 1.156 7 C -0.455 4.455 8 H 0.074 0.926 9 N -0.230 5.230 10 C 0.206 3.794 11 O -0.498 6.498 12 C -0.082 4.082 13 N -0.223 5.223 14 C -0.072 4.072 15 C -0.163 4.163 16 C -0.016 4.016 17 N -0.316 5.316 18 C 0.340 3.660 19 O -0.478 6.478 20 C -0.241 4.241 21 C 0.001 3.999 22 C -0.090 4.090 23 C -0.179 4.179 24 C -0.251 4.251 25 C -0.080 4.080 26 O -0.076 6.076 27 C 0.006 3.994 28 C -0.076 4.076 29 H 0.088 0.912 30 H 0.224 0.776 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.188 0.812 42 H 0.194 0.806 43 H 0.259 0.741 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 27.816 -14.908 -5.173 31.980 hybrid contribution -1.433 1.168 0.064 1.850 sum 26.383 -13.740 -5.109 30.182 Atomic orbital electron populations 1.69800 1.08091 1.29227 1.50188 1.26103 0.96448 1.02675 0.96102 0.85395 0.79470 0.76959 0.79921 1.18166 1.20108 1.15639 1.18996 0.81593 0.94804 1.50154 0.92567 1.42221 1.05871 1.07880 1.66998 1.22177 0.92181 0.83530 0.81474 1.90525 1.71487 1.32069 1.55734 1.22432 0.87453 0.92365 1.05989 1.61453 1.56839 1.01128 1.02861 1.21011 0.97626 0.96244 0.92317 1.21430 1.00149 0.96113 0.98627 1.21818 0.98887 0.95482 0.85373 1.47523 1.06374 1.52415 1.25318 1.17364 0.82466 0.79400 0.86767 1.90770 1.71034 1.52015 1.34006 1.22146 0.95380 1.05783 1.00761 1.20713 0.93245 0.90850 0.95121 1.19900 0.93693 1.08094 0.87273 1.22769 0.93969 1.00877 1.00328 1.22177 1.01193 1.06541 0.95153 1.25196 0.85022 0.98817 0.98965 1.84105 1.38512 1.60032 1.24924 1.21921 0.93917 0.94351 0.89219 1.22284 0.95241 0.97715 0.92323 0.91167 0.77604 0.86754 0.86405 0.92706 0.94901 0.91008 0.88062 0.87705 0.90699 0.83528 0.82652 0.81200 0.80609 0.74138 0.90958 0.90326 0.91516 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.88 13.96 21.66 0.30 -55.58 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 3 Si 0.96 38.79 27.74 68.60 1.90 40.69 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 7 C -0.33 -18.79 10.16 84.04 0.85 -17.93 16 8 H 0.06 3.86 7.39 -2.91 -0.02 3.83 16 9 N -0.59 -27.20 5.09 -306.99 -1.56 -28.76 16 10 C 0.42 18.09 7.06 87.66 0.62 18.71 16 11 O -0.61 -31.32 12.14 -3.07 -0.04 -31.36 16 12 C 0.05 1.53 5.49 85.56 0.47 2.00 16 13 N -0.50 -15.22 4.38 -915.73 -4.01 -19.23 16 14 C 0.06 1.63 4.03 84.72 0.34 1.97 16 15 C -0.12 -2.62 5.82 29.55 0.17 -2.45 16 16 C 0.11 2.19 5.04 87.38 0.44 2.63 16 17 N -0.59 -14.81 2.53 -827.06 -2.09 -16.90 16 18 C 0.55 14.65 7.38 85.06 0.63 15.28 16 19 O -0.59 -19.86 15.43 -4.58 -0.07 -19.93 16 20 C -0.22 -4.59 8.34 22.48 0.19 -4.40 16 21 C 0.02 0.39 9.39 22.50 0.21 0.60 16 22 C -0.04 -0.69 6.84 23.03 0.16 -0.53 16 23 C -0.16 -2.11 10.90 22.70 0.25 -1.86 16 24 C -0.23 -2.26 10.87 22.06 0.24 -2.02 16 25 C -0.01 -0.11 12.06 67.11 0.81 0.70 16 26 O -0.18 -2.82 10.18 -6.09 -0.06 -2.89 16 27 C 0.13 3.56 6.46 86.61 0.56 4.12 16 28 C 0.05 1.71 4.25 87.18 0.37 2.08 16 29 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.39 15.09 5.76 -92.70 -0.53 14.55 16 31 H 0.11 3.06 8.09 -2.38 -0.02 3.04 16 32 H 0.12 3.08 7.90 -2.39 -0.02 3.07 16 33 H 0.05 1.63 7.53 -2.39 -0.02 1.61 16 34 H 0.03 1.17 5.84 -2.39 -0.01 1.16 16 35 H 0.07 1.52 7.99 -2.38 -0.02 1.50 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.59 6.17 -2.39 -0.01 1.58 16 38 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 39 H 0.15 2.55 5.71 -2.91 -0.02 2.53 16 40 H 0.16 2.95 7.47 -2.91 -0.02 2.92 16 41 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 43 H 0.24 0.14 8.06 -2.91 -0.02 0.12 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 2.36 7.03 -2.39 -0.02 2.34 16 46 H 0.07 2.20 7.46 -2.39 -0.02 2.18 16 47 H 0.04 1.55 6.19 -2.39 -0.01 1.54 16 Total: -1.00 -79.93 379.13 1.56 -78.37 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.42 Total: 37.02 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.77 Total: 18.57 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -7.36 Total: -120.48 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.17 Total: -54.18 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.69 kcal Total: -79.93 1.56 -78.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194666848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.006 kcal (2) G-P(sol) polarization free energy of solvation -79.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds