Wall clock time and date at job start Wed Apr 1 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48496 * 109.47394 * 270.00195 * 3 2 1 5 5 H 1.48507 * 109.46828 * 30.00045 * 3 2 1 6 6 H 1.48495 * 109.47159 * 149.99379 * 3 2 1 7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99888 * 180.02562 * 13 12 10 15 15 H 1.08997 * 112.88759 * 23.65212 * 14 13 12 16 16 C 1.53947 * 113.66047 * 252.18447 * 14 13 12 17 17 C 1.53951 * 87.29770 * 220.79946 * 16 14 13 18 18 H 1.09007 * 113.66049 * 270.26596 * 17 16 14 19 19 N 1.46498 * 113.66843 * 139.20400 * 17 16 14 20 20 C 1.34781 * 119.99777 * 107.81077 * 19 17 16 21 21 O 1.21700 * 119.99862 * 0.02562 * 20 19 17 22 22 C 1.46656 * 119.99890 * 180.02562 * 20 19 17 23 23 C 1.36545 * 125.98817 * 179.71834 * 22 20 19 24 24 C 1.40356 * 106.70699 * 179.85164 * 23 22 20 25 25 C 1.35131 * 107.11717 * 0.41019 * 24 23 22 26 26 O 1.33932 * 108.76565 * 359.74469 * 25 24 23 27 27 C 1.52907 * 86.78021 * 24.73313 * 17 16 14 28 28 C 1.52910 * 121.13751 * 100.82531 * 27 17 16 29 29 C 1.53954 * 86.78436 * 100.81619 * 28 27 17 30 30 C 1.52916 * 121.13742 * 209.38385 * 27 17 16 31 31 H 0.97002 * 120.00138 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 34 34 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 35 35 H 1.00902 * 110.99923 * 303.95945 * 13 12 10 36 36 H 1.09000 * 113.57985 * 335.40090 * 16 14 13 37 37 H 1.09006 * 113.58200 * 106.19498 * 16 14 13 38 38 H 0.96994 * 120.00445 * 287.81771 * 19 17 16 39 39 H 1.07999 * 126.64255 * 359.96036 * 23 22 20 40 40 H 1.08005 * 126.44218 * 180.15629 * 24 23 22 41 41 H 1.08004 * 125.61610 * 179.78268 * 25 24 23 42 42 H 1.08994 * 113.66459 * 215.29517 * 28 27 17 43 43 H 1.09007 * 113.65712 * 346.34550 * 28 27 17 44 44 H 1.08997 * 113.58149 * 270.13274 * 29 28 27 45 45 H 1.08996 * 113.57703 * 139.34064 * 29 28 27 46 46 H 1.08996 * 113.66264 * 13.65260 * 30 27 17 47 47 H 1.08992 * 113.66391 * 144.61844 * 30 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 7 6.0505 -3.7554 0.0017 14 6 7.5190 -3.7946 0.0023 15 1 7.9671 -2.8862 0.4051 16 6 8.1257 -4.2427 -1.3398 17 6 9.1410 -5.0631 -0.5236 18 1 10.0461 -4.5113 -0.2697 19 7 9.4180 -6.3860 -1.0887 20 6 10.6032 -6.6306 -1.6819 21 8 11.4434 -5.7526 -1.7477 22 6 10.8804 -7.9548 -2.2482 23 6 12.0313 -8.3332 -2.8780 24 6 11.8638 -9.6755 -3.2522 25 6 10.6301 -10.0502 -2.8478 26 8 10.0406 -9.0106 -2.2433 27 6 8.0983 -5.0796 0.5948 28 6 7.2177 -6.3060 0.8367 29 6 8.1697 -6.6534 1.9956 30 6 8.5158 -5.1548 2.0639 31 1 -0.4850 0.8401 -0.0004 32 1 3.8648 -0.3633 -0.0004 33 1 5.9241 -1.8558 0.8906 34 1 5.9242 -1.8574 -0.8894 35 1 5.6750 -4.2714 0.7832 36 1 7.4524 -4.8547 -1.9399 37 1 8.5779 -3.4292 -1.9071 38 1 8.7485 -7.0858 -1.0361 39 1 12.9024 -7.7191 -3.0526 40 1 12.5839 -10.2918 -3.7701 41 1 10.1918 -11.0273 -2.9884 42 1 6.2060 -6.0612 1.1600 43 1 7.2400 -7.0284 0.0207 44 1 9.0089 -7.2816 1.6971 45 1 7.6582 -7.0237 2.8840 46 1 9.5751 -4.9576 2.2284 47 1 7.8699 -4.5852 2.7320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202324294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:45 Heat of formation + Delta-G solvation = 2.225389 kcal Electronic energy + Delta-G solvation = -29901.227869 eV Core-core repulsion = 25666.644494 eV Total energy + Delta-G solvation = -4234.583374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.06892 -41.30174 -39.22139 -38.34817 -35.58115 -34.80904 -33.93554 -33.46246 -32.49264 -31.63975 -30.22674 -27.19241 -26.06150 -24.91541 -24.81399 -23.64536 -22.37727 -22.00303 -20.97472 -20.64333 -19.42414 -19.28926 -18.45032 -17.86366 -16.87925 -16.73406 -16.65616 -16.25858 -15.61818 -15.47929 -15.13569 -14.88009 -14.71594 -14.56962 -13.89241 -13.71916 -13.43237 -13.39044 -13.24140 -13.09531 -12.90586 -12.73367 -12.56323 -12.22803 -12.17093 -12.06720 -11.84400 -11.49686 -11.36692 -11.15348 -10.74814 -10.60134 -10.49396 -10.48210 -10.41815 -10.11076 -9.97574 -9.57421 -9.36874 -9.04142 -8.57607 -8.19959 -8.14344 -6.31384 -3.82779 0.67352 1.94715 2.28368 2.83518 2.86480 3.02386 3.07148 3.15114 3.74004 4.00423 4.09775 4.11747 4.27286 4.32648 4.41193 4.48508 4.56280 4.62051 4.63854 4.73530 4.92727 5.16755 5.21099 5.21789 5.29081 5.32815 5.35875 5.44268 5.49012 5.58790 5.63981 5.67158 5.73770 5.78303 5.82063 5.85231 5.89365 5.93982 5.96337 6.12562 6.21088 6.31515 6.44100 7.12485 7.17955 7.56204 7.58551 7.74946 8.14243 8.59532 8.94700 9.42312 9.82505 10.81705 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020031 B = 0.001947 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.503950 B =14373.975239 C =14469.211427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.046 3.954 13 N -0.649 5.649 14 C 0.075 3.925 15 H 0.078 0.922 16 C -0.134 4.134 17 C 0.146 3.854 18 H 0.120 0.880 19 N -0.702 5.702 20 C 0.604 3.396 21 O -0.522 6.522 22 C -0.080 4.080 23 C -0.121 4.121 24 C -0.226 4.226 25 C -0.005 4.005 26 O -0.163 6.163 27 C -0.114 4.114 28 C -0.107 4.107 29 C -0.140 4.140 30 C -0.128 4.128 31 H 0.273 0.727 32 H 0.370 0.630 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.351 0.649 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.211 0.789 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.265 -16.271 -1.179 30.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.447 6.447 12 C -0.087 4.087 13 N -0.283 5.283 14 C -0.036 4.036 15 H 0.096 0.904 16 C -0.174 4.174 17 C 0.041 3.959 18 H 0.138 0.862 19 N -0.353 5.353 20 C 0.390 3.610 21 O -0.400 6.400 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.245 4.245 25 C -0.075 4.075 26 O -0.059 6.059 27 C -0.115 4.115 28 C -0.145 4.145 29 C -0.178 4.178 30 C -0.165 4.165 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.173 0.827 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.244 0.756 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.227 0.773 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 24.856 -16.267 -1.747 29.757 hybrid contribution 0.600 1.263 0.708 1.567 sum 25.456 -15.005 -1.039 29.567 Atomic orbital electron populations 1.69625 1.05636 1.27487 1.49394 1.25044 0.95503 0.97991 0.97663 0.86666 0.79729 0.84026 0.78924 1.19587 1.20204 1.19539 1.19428 0.79259 0.96612 1.48049 0.86295 1.42212 1.07534 1.06188 1.67077 1.19723 0.88217 0.84548 0.83938 1.90561 1.69467 1.30934 1.53775 1.21790 0.94948 0.90645 1.01281 1.60211 1.04694 1.12519 1.50863 1.22614 0.88600 0.95987 0.96426 0.90436 1.23545 0.96977 0.99686 0.97150 1.22195 0.97267 0.83166 0.93242 0.86250 1.45872 1.16517 1.15134 1.57741 1.16580 0.82477 0.84075 0.77862 1.90886 1.46561 1.43894 1.58671 1.22134 0.92138 0.88913 1.10016 1.21998 0.98250 0.95759 0.98111 1.21886 0.98636 0.96379 1.07645 1.24457 0.93715 0.91963 0.97379 1.84076 1.41581 1.18968 1.61234 1.23217 0.96956 0.96903 0.94450 1.22503 0.98652 0.95298 0.98025 1.22851 0.99452 0.96435 0.99043 1.22780 1.01528 0.96957 0.95275 0.91624 0.79690 0.93729 0.89421 0.82736 0.88544 0.90971 0.75609 0.82222 0.82543 0.77252 0.88442 0.91479 0.90480 0.91210 0.91269 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.38 27.74 -169.99 -4.71 14.66 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 7 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 9 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 10 C 0.45 10.09 7.82 -10.99 -0.09 10.00 16 11 O -0.57 -14.96 15.78 5.54 0.09 -14.87 16 12 C 0.05 0.75 6.01 -4.97 -0.03 0.72 16 13 N -0.65 -9.52 5.95 -107.52 -0.64 -10.16 16 14 C 0.07 0.84 4.03 -67.27 -0.27 0.57 16 15 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 16 C -0.13 -1.48 7.68 -25.75 -0.20 -1.68 16 17 C 0.15 1.45 4.12 -67.48 -0.28 1.17 16 18 H 0.12 1.26 7.46 -51.92 -0.39 0.87 16 19 N -0.70 -6.76 5.27 -54.68 -0.29 -7.04 16 20 C 0.60 6.81 7.79 -12.86 -0.10 6.71 16 21 O -0.52 -7.36 16.46 5.19 0.09 -7.27 16 22 C -0.08 -0.79 7.13 -36.80 -0.26 -1.05 16 23 C -0.12 -1.05 10.62 -39.40 -0.42 -1.47 16 24 C -0.23 -1.44 10.87 -39.89 -0.43 -1.87 16 25 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 26 O -0.16 -1.37 10.40 5.00 0.05 -1.32 16 27 C -0.11 -1.08 0.99 -154.71 -0.15 -1.23 16 28 C -0.11 -1.00 7.00 -26.28 -0.18 -1.19 16 29 C -0.14 -1.15 8.08 -25.75 -0.21 -1.36 16 30 C -0.13 -1.11 7.84 -26.28 -0.21 -1.31 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 33 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.35 5.32 6.58 -39.29 -0.26 5.06 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.41 3.45 6.48 -40.82 -0.26 3.19 16 39 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.21 0.36 8.06 -52.48 -0.42 -0.07 16 42 H 0.10 1.05 6.67 -51.93 -0.35 0.70 16 43 H 0.07 0.59 6.42 -51.92 -0.33 0.26 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -34.34 391.34 -7.96 -42.30 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -6.44 Total: 16.23 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.72 Total: 0.60 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.21 Total: -56.23 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.22 Total: -23.47 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.34 -7.96 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202324294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.530 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds