Wall clock time and date at job start Wed Apr 1 2020 05:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48505 * 109.46675 * 239.99824 * 3 2 1 5 5 H 1.48505 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47311 * 119.99785 * 3 2 1 7 7 C 1.38814 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00516 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.94398 * 333.10672 * 10 9 7 12 12 C 1.53950 * 113.65952 * 104.50344 * 10 9 7 13 13 C 1.53952 * 87.37851 * 89.78430 * 12 10 9 14 14 H 1.09000 * 113.66213 * 139.16450 * 13 12 10 15 15 N 1.46497 * 113.66105 * 270.21915 * 13 12 10 16 16 C 1.34776 * 120.00198 * 255.49637 * 15 13 12 17 17 O 1.21280 * 119.99730 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00241 * 180.02562 * 16 15 13 19 19 N 1.46498 * 109.47240 * 180.02562 * 18 16 15 20 20 C 1.34783 * 120.00123 * 179.97438 * 19 18 16 21 21 O 1.21697 * 119.99606 * 0.02562 * 20 19 18 22 22 C 1.46649 * 119.99940 * 179.97438 * 20 19 18 23 23 C 1.36548 * 125.98950 * 179.71169 * 22 20 19 24 24 C 1.40360 * 106.71280 * 179.90845 * 23 22 20 25 25 C 1.35134 * 107.11400 * 0.35850 * 24 23 22 26 26 O 1.33936 * 108.76506 * 359.77871 * 25 24 23 27 27 C 1.52909 * 86.78252 * 24.68886 * 13 12 10 28 28 C 1.52907 * 121.13536 * 209.38099 * 27 13 12 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 13 30 30 C 1.52915 * 121.13447 * 100.82251 * 27 13 12 31 31 H 0.96995 * 120.00125 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99630 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.58302 * 335.14031 * 12 10 9 34 34 H 1.09004 * 113.57731 * 204.42204 * 12 10 9 35 35 H 0.97008 * 120.00272 * 75.49431 * 15 13 12 36 36 H 1.09001 * 109.47074 * 299.99849 * 18 16 15 37 37 H 1.09002 * 109.47189 * 59.99683 * 18 16 15 38 38 H 0.97001 * 120.00115 * 0.02562 * 19 18 16 39 39 H 1.08002 * 126.64037 * 0.04214 * 23 22 20 40 40 H 1.07998 * 126.44775 * 180.15020 * 24 23 22 41 41 H 1.07997 * 125.61967 * 179.77186 * 25 24 23 42 42 H 1.08994 * 113.66316 * 323.85618 * 28 27 13 43 43 H 1.08997 * 113.66044 * 94.91866 * 28 27 13 44 44 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 45 45 H 1.08997 * 113.58119 * 139.33687 * 29 28 27 46 46 H 1.09004 * 113.66330 * 265.09006 * 30 27 13 47 47 H 1.09001 * 113.65876 * 36.13855 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 1 3.0458 -3.5773 -0.4535 12 6 2.0611 -4.3685 1.3657 13 6 0.7684 -5.0760 0.9204 14 1 0.7272 -6.1287 1.2001 15 7 -0.4521 -4.3443 1.2684 16 6 -1.2184 -4.7618 2.2955 17 8 -0.8972 -5.7430 2.9320 18 6 -2.4742 -4.0095 2.6531 19 7 -3.1231 -4.6575 3.7956 20 6 -4.2702 -4.1547 4.2935 21 8 -4.7672 -3.1626 3.7936 22 6 -4.9200 -4.8037 5.4368 23 6 -6.0758 -4.3974 6.0398 24 6 -6.3284 -5.3043 7.0808 25 6 -5.3241 -6.2084 7.0730 26 8 -4.4775 -5.9034 6.0810 27 6 1.2366 -4.8405 -0.5161 28 6 0.2328 -4.6695 -1.6568 29 6 1.3084 -5.2734 -2.5780 30 6 1.8895 -5.9595 -1.3284 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 1.9201 -3.6933 2.2097 34 1 2.9041 -5.0459 1.5024 35 1 -0.7088 -3.5593 0.7596 36 1 -2.2204 -2.9822 2.9146 37 1 -3.1534 -4.0102 1.8006 38 1 -2.7267 -5.4480 4.1943 39 1 -6.6799 -3.5447 5.7670 40 1 -7.1658 -5.2817 7.7624 41 1 -5.2210 -7.0399 7.7544 42 1 -0.6557 -5.2926 -1.5548 43 1 -0.0013 -3.6289 -1.8812 44 1 1.9742 -4.5301 -3.0166 45 1 0.9102 -5.9722 -3.3137 46 1 2.9788 -5.9494 -1.2904 47 1 1.4666 -6.9451 -1.1339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203688662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:07 Heat of formation + Delta-G solvation = 9.058092 kcal Electronic energy + Delta-G solvation = -30376.932659 eV Core-core repulsion = 26142.645573 eV Total energy + Delta-G solvation = -4234.287086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.90807 -40.73039 -39.73476 -38.62826 -35.36405 -34.62795 -33.74840 -33.27931 -32.37195 -30.53112 -29.91953 -27.85368 -25.49880 -24.63867 -24.20206 -23.39231 -22.40319 -21.96905 -20.62407 -20.50911 -20.06491 -19.08905 -18.07370 -17.12889 -16.87512 -16.61116 -16.34630 -16.07561 -15.70301 -15.41757 -15.19158 -14.70778 -14.55689 -14.36488 -14.14047 -13.56732 -13.29778 -13.24624 -13.06894 -12.94780 -12.91791 -12.77219 -12.37934 -12.13850 -11.91258 -11.56610 -11.39407 -10.94809 -10.89886 -10.74479 -10.50875 -10.32757 -10.25868 -10.13277 -9.96120 -9.78751 -9.63346 -9.47180 -9.37829 -8.92473 -8.91808 -8.61065 -7.10491 -5.89822 -3.18877 0.84045 2.09765 2.40482 2.68387 2.86534 3.02760 3.38615 3.43445 3.44548 3.49109 4.43676 4.45229 4.63543 4.69152 4.72339 4.80991 4.95657 5.01731 5.12186 5.25134 5.32577 5.35758 5.39401 5.47730 5.50210 5.62006 5.64258 5.80325 5.83855 5.91231 5.95692 5.98241 6.04440 6.08602 6.12488 6.20194 6.30620 6.46612 6.55218 6.57317 6.63811 6.74745 6.87870 7.01569 7.32483 7.61989 7.70384 7.93847 8.27810 8.33955 9.40118 9.93296 10.27180 11.32604 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.002756 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.644649 B =10157.219002 C =12081.400780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.699 5.699 10 C 0.191 3.809 11 H 0.065 0.935 12 C -0.185 4.185 13 C 0.138 3.862 14 H 0.091 0.909 15 N -0.688 5.688 16 C 0.514 3.486 17 O -0.551 6.551 18 C 0.097 3.903 19 N -0.704 5.704 20 C 0.603 3.397 21 O -0.517 6.517 22 C -0.074 4.074 23 C -0.121 4.121 24 C -0.227 4.227 25 C -0.007 4.007 26 O -0.162 6.162 27 C -0.127 4.127 28 C -0.128 4.128 29 C -0.134 4.134 30 C -0.106 4.106 31 H 0.258 0.742 32 H 0.380 0.620 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.411 0.589 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.416 0.584 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.210 0.790 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -14.848 7.288 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.079 3.921 11 H 0.083 0.917 12 C -0.227 4.227 13 C 0.033 3.967 14 H 0.109 0.891 15 N -0.340 5.340 16 C 0.299 3.701 17 O -0.430 6.430 18 C -0.030 4.030 19 N -0.358 5.358 20 C 0.388 3.612 21 O -0.394 6.394 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.246 4.246 25 C -0.077 4.077 26 O -0.057 6.057 27 C -0.129 4.129 28 C -0.165 4.165 29 C -0.172 4.172 30 C -0.145 4.145 31 H 0.068 0.932 32 H 0.215 0.785 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.254 0.746 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.227 0.773 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.398 -14.768 7.234 18.032 hybrid contribution 0.012 0.993 0.243 1.022 sum -7.386 -13.775 7.476 17.326 Atomic orbital electron populations 1.69591 1.05061 1.26216 1.57059 1.24727 0.95568 0.97740 1.02414 0.86241 0.78547 0.83342 0.77863 1.21227 1.21641 1.21237 1.19190 0.91127 0.83673 1.43569 0.90966 1.42079 1.05253 0.99335 1.87232 1.20910 0.94389 0.84664 0.92172 0.91688 1.24277 0.96190 1.00192 1.02036 1.21657 0.84005 0.95625 0.95420 0.89123 1.45609 1.24047 1.31595 1.32699 1.20317 0.84751 0.84606 0.80423 1.90657 1.73045 1.27419 1.51873 1.21176 0.93208 0.98075 0.90551 1.45558 1.24406 1.32607 1.33263 1.16484 0.80369 0.83269 0.81043 1.90928 1.64504 1.24686 1.59305 1.22032 0.99020 0.91630 0.99933 1.21996 0.95853 1.00880 0.95427 1.21871 1.02452 0.97650 1.02596 1.24438 0.90065 1.01349 0.91871 1.84102 1.45785 1.38347 1.37449 1.23552 0.98747 0.98780 0.91846 1.22590 0.96216 1.02140 0.95569 1.22749 0.98832 0.99662 0.95926 1.22518 1.00007 0.96510 0.95421 0.93182 0.78509 0.90910 0.90464 0.75080 0.87198 0.87769 0.74576 0.82087 0.82560 0.77329 0.90898 0.90101 0.90031 0.92149 0.91312 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.33 9.98 -15.06 -0.15 -6.48 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 9 N -0.70 -15.74 4.77 -52.91 -0.25 -15.99 16 10 C 0.19 3.51 4.36 -67.40 -0.29 3.22 16 11 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 12 C -0.18 -3.16 7.68 -25.75 -0.20 -3.35 16 13 C 0.14 2.19 4.08 -67.48 -0.28 1.91 16 14 H 0.09 1.44 7.55 -51.93 -0.39 1.05 16 15 N -0.69 -10.99 4.93 -53.37 -0.26 -11.26 16 16 C 0.51 8.09 7.90 -10.99 -0.09 8.00 16 17 O -0.55 -9.74 15.31 5.56 0.09 -9.65 16 18 C 0.10 1.37 6.15 -5.20 -0.03 1.34 16 19 N -0.70 -9.69 5.52 -62.81 -0.35 -10.04 16 20 C 0.60 8.74 7.79 -12.86 -0.10 8.64 16 21 O -0.52 -8.92 16.87 5.19 0.09 -8.83 16 22 C -0.07 -0.92 7.13 -36.80 -0.26 -1.18 16 23 C -0.12 -1.30 10.62 -39.39 -0.42 -1.72 16 24 C -0.23 -1.83 10.87 -39.89 -0.43 -2.27 16 25 C -0.01 -0.05 12.08 29.63 0.36 0.30 16 26 O -0.16 -1.76 10.40 4.98 0.05 -1.71 16 27 C -0.13 -1.91 0.77 -154.63 -0.12 -2.03 16 28 C -0.13 -1.88 7.18 -26.28 -0.19 -2.07 16 29 C -0.13 -1.75 8.08 -25.75 -0.21 -1.96 16 30 C -0.11 -1.34 7.84 -26.28 -0.21 -1.54 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.38 8.74 5.13 -40.82 -0.21 8.53 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 6.92 6.21 -40.82 -0.25 6.67 16 36 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.42 5.55 7.19 -40.82 -0.29 5.26 16 39 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.21 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.40 7.51 -51.93 -0.39 1.01 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -31.15 395.02 -8.27 -39.43 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -6.58 Total: 20.44 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.71 Total: 0.49 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.14 Total: -62.68 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.22 Total: -20.19 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.15 -8.27 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203688662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.484 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds