Wall clock time and date at job start Wed Apr 1 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48505 * 109.46675 * 239.99824 * 3 2 1 5 5 H 1.48505 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47311 * 119.99785 * 3 2 1 7 7 C 1.38814 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00516 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.94398 * 333.10672 * 10 9 7 12 12 C 1.53950 * 113.65952 * 104.50344 * 10 9 7 13 13 C 1.53952 * 87.37851 * 89.78430 * 12 10 9 14 14 H 1.09000 * 113.66213 * 139.16450 * 13 12 10 15 15 N 1.46497 * 113.66105 * 270.21915 * 13 12 10 16 16 C 1.34776 * 120.00198 * 255.49637 * 15 13 12 17 17 O 1.21280 * 119.99730 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00241 * 180.02562 * 16 15 13 19 19 N 1.46498 * 109.47240 * 180.02562 * 18 16 15 20 20 C 1.34783 * 120.00123 * 179.97438 * 19 18 16 21 21 O 1.21697 * 119.99606 * 0.02562 * 20 19 18 22 22 C 1.46649 * 119.99940 * 179.97438 * 20 19 18 23 23 C 1.36548 * 125.98950 * 179.71169 * 22 20 19 24 24 C 1.40360 * 106.71280 * 179.90845 * 23 22 20 25 25 C 1.35134 * 107.11400 * 0.35850 * 24 23 22 26 26 O 1.33936 * 108.76506 * 359.77871 * 25 24 23 27 27 C 1.52909 * 86.78252 * 24.68886 * 13 12 10 28 28 C 1.52907 * 121.13536 * 209.38099 * 27 13 12 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 13 30 30 C 1.52915 * 121.13447 * 100.82251 * 27 13 12 31 31 H 0.96995 * 120.00125 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99630 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.58302 * 335.14031 * 12 10 9 34 34 H 1.09004 * 113.57731 * 204.42204 * 12 10 9 35 35 H 0.97008 * 120.00272 * 75.49431 * 15 13 12 36 36 H 1.09001 * 109.47074 * 299.99849 * 18 16 15 37 37 H 1.09002 * 109.47189 * 59.99683 * 18 16 15 38 38 H 0.97001 * 120.00115 * 0.02562 * 19 18 16 39 39 H 1.08002 * 126.64037 * 0.04214 * 23 22 20 40 40 H 1.07998 * 126.44775 * 180.15020 * 24 23 22 41 41 H 1.07997 * 125.61967 * 179.77186 * 25 24 23 42 42 H 1.08994 * 113.66316 * 323.85618 * 28 27 13 43 43 H 1.08997 * 113.66044 * 94.91866 * 28 27 13 44 44 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 45 45 H 1.08997 * 113.58119 * 139.33687 * 29 28 27 46 46 H 1.09004 * 113.66330 * 265.09006 * 30 27 13 47 47 H 1.09001 * 113.65876 * 36.13855 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 1 3.0458 -3.5773 -0.4535 12 6 2.0611 -4.3685 1.3657 13 6 0.7684 -5.0760 0.9204 14 1 0.7272 -6.1287 1.2001 15 7 -0.4521 -4.3443 1.2684 16 6 -1.2184 -4.7618 2.2955 17 8 -0.8972 -5.7430 2.9320 18 6 -2.4742 -4.0095 2.6531 19 7 -3.1231 -4.6575 3.7956 20 6 -4.2702 -4.1547 4.2935 21 8 -4.7672 -3.1626 3.7936 22 6 -4.9200 -4.8037 5.4368 23 6 -6.0758 -4.3974 6.0398 24 6 -6.3284 -5.3043 7.0808 25 6 -5.3241 -6.2084 7.0730 26 8 -4.4775 -5.9034 6.0810 27 6 1.2366 -4.8405 -0.5161 28 6 0.2328 -4.6695 -1.6568 29 6 1.3084 -5.2734 -2.5780 30 6 1.8895 -5.9595 -1.3284 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 1.9201 -3.6933 2.2097 34 1 2.9041 -5.0459 1.5024 35 1 -0.7088 -3.5593 0.7596 36 1 -2.2204 -2.9822 2.9146 37 1 -3.1534 -4.0102 1.8006 38 1 -2.7267 -5.4480 4.1943 39 1 -6.6799 -3.5447 5.7670 40 1 -7.1658 -5.2817 7.7624 41 1 -5.2210 -7.0399 7.7544 42 1 -0.6557 -5.2926 -1.5548 43 1 -0.0013 -3.6289 -1.8812 44 1 1.9742 -4.5301 -3.0166 45 1 0.9102 -5.9722 -3.3137 46 1 2.9788 -5.9494 -1.2904 47 1 1.4666 -6.9451 -1.1339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203688662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:06 Heat of formation + Delta-G solvation = -12.213647 kcal Electronic energy + Delta-G solvation = -30377.855071 eV Core-core repulsion = 26142.645573 eV Total energy + Delta-G solvation = -4235.209498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.67010 -42.03319 -40.92110 -39.88545 -36.68323 -35.84381 -35.39998 -34.05652 -33.88195 -31.84730 -31.28963 -28.97349 -26.76981 -26.22200 -25.46265 -24.55796 -23.74395 -22.71699 -21.91011 -21.52696 -21.30615 -20.15961 -19.50496 -18.76441 -17.94615 -17.57380 -17.49554 -17.12564 -16.87051 -16.70747 -16.51154 -16.18409 -15.92147 -15.65764 -15.44569 -15.00840 -14.74331 -14.32697 -14.14747 -14.04221 -13.94385 -13.64158 -13.56828 -13.40013 -13.25159 -13.09500 -12.79772 -12.66563 -12.55455 -12.21890 -11.94628 -11.82803 -11.67892 -11.34321 -11.22737 -11.06996 -10.99125 -10.85663 -10.64676 -10.52885 -9.93416 -9.68986 -8.98663 -7.94894 -5.21564 -0.02882 1.36894 1.41212 1.46004 1.48722 1.49468 1.55521 1.89300 2.00838 2.31812 2.55976 3.35524 3.38231 3.47553 3.66986 3.72009 3.82937 3.94300 3.95799 4.03534 4.09204 4.18276 4.20830 4.28328 4.28467 4.56711 4.59485 4.67573 4.79438 4.87849 4.89509 4.92143 4.93495 4.95984 5.01437 5.14152 5.15294 5.20861 5.27741 5.38352 5.50832 5.59035 5.63057 5.66105 5.79605 6.26251 6.27956 6.38894 6.83057 7.00183 7.35526 8.08987 8.32621 9.27315 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.002756 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.644649 B =10157.219002 C =12081.400780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.066 4.066 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.708 5.708 10 C 0.175 3.825 11 H 0.062 0.938 12 C -0.178 4.178 13 C 0.140 3.860 14 H 0.100 0.900 15 N -0.689 5.689 16 C 0.518 3.482 17 O -0.568 6.568 18 C 0.101 3.899 19 N -0.700 5.700 20 C 0.602 3.398 21 O -0.556 6.556 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.233 4.233 25 C 0.012 3.988 26 O -0.174 6.174 27 C -0.117 4.117 28 C -0.129 4.129 29 C -0.129 4.129 30 C -0.092 4.092 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.406 0.594 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.419 0.581 39 H 0.161 0.839 40 H 0.187 0.813 41 H 0.257 0.743 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -17.424 8.069 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.210 1.210 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.348 5.348 10 C 0.064 3.936 11 H 0.080 0.920 12 C -0.219 4.219 13 C 0.035 3.965 14 H 0.118 0.882 15 N -0.339 5.339 16 C 0.305 3.695 17 O -0.448 6.448 18 C -0.026 4.026 19 N -0.353 5.353 20 C 0.390 3.610 21 O -0.436 6.436 22 C -0.164 4.164 23 C -0.140 4.140 24 C -0.251 4.251 25 C -0.057 4.057 26 O -0.070 6.070 27 C -0.119 4.119 28 C -0.167 4.167 29 C -0.166 4.166 30 C -0.130 4.130 31 H 0.060 0.940 32 H 0.209 0.791 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.244 0.756 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.257 0.743 39 H 0.179 0.821 40 H 0.205 0.795 41 H 0.272 0.728 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.165 -17.395 8.014 20.448 hybrid contribution -0.041 1.687 0.096 1.690 sum -7.206 -15.708 8.109 19.090 Atomic orbital electron populations 1.69726 1.06133 1.26094 1.59089 1.25388 0.96319 1.00478 1.03682 0.85338 0.77270 0.79947 0.77911 1.20551 1.22476 1.21002 1.19516 0.91412 0.84981 1.41374 0.90835 1.42155 1.05178 1.00053 1.87409 1.21128 0.94534 0.84287 0.93626 0.91970 1.24201 0.98061 0.99988 0.99692 1.21696 0.83254 0.95682 0.95840 0.88227 1.45663 1.24225 1.31382 1.32662 1.20444 0.84865 0.84278 0.79948 1.90639 1.73557 1.28217 1.52363 1.21103 0.92916 0.97293 0.91262 1.45518 1.24287 1.32507 1.33019 1.16774 0.80061 0.82827 0.81332 1.90890 1.65510 1.26400 1.60838 1.21651 1.00288 0.93533 1.00960 1.22292 0.95011 1.01051 0.95692 1.22244 1.03688 0.96886 1.02295 1.25461 0.88468 1.01455 0.90327 1.84091 1.46728 1.37836 1.38310 1.23422 0.98589 0.98196 0.91718 1.22598 0.97256 1.00678 0.96168 1.22715 0.97746 0.99674 0.96487 1.22548 1.00708 0.96288 0.93476 0.94017 0.79073 0.93938 0.87863 0.75643 0.88257 0.86640 0.74253 0.82124 0.79537 0.72769 0.89500 0.93322 0.91230 0.89831 0.90160 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.52 13.06 21.65 0.28 -55.24 16 2 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.24 -12.67 9.98 84.03 0.84 -11.83 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.71 -32.56 4.77 -321.31 -1.53 -34.10 16 10 C 0.17 6.37 4.36 45.33 0.20 6.57 16 11 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 12 C -0.18 -5.95 7.68 31.23 0.24 -5.71 16 13 C 0.14 4.30 4.08 45.28 0.18 4.48 16 14 H 0.10 2.94 7.55 -2.39 -0.02 2.92 16 15 N -0.69 -22.23 4.93 -441.16 -2.17 -24.40 16 16 C 0.52 16.50 7.90 87.66 0.69 17.19 16 17 O -0.57 -19.88 15.31 -3.03 -0.05 -19.92 16 18 C 0.10 2.99 6.15 85.63 0.53 3.51 16 19 N -0.70 -19.91 5.52 -470.84 -2.60 -22.51 16 20 C 0.60 18.21 7.79 86.44 0.67 18.88 16 21 O -0.56 -20.22 16.87 -4.34 -0.07 -20.29 16 22 C -0.11 -2.82 7.13 24.07 0.17 -2.65 16 23 C -0.12 -2.51 10.62 22.39 0.24 -2.27 16 24 C -0.23 -3.16 10.87 22.07 0.24 -2.92 16 25 C 0.01 0.15 12.08 67.10 0.81 0.96 16 26 O -0.17 -3.58 10.40 -5.08 -0.05 -3.64 16 27 C -0.12 -3.37 0.77 -52.26 -0.04 -3.41 16 28 C -0.13 -3.69 7.18 30.89 0.22 -3.47 16 29 C -0.13 -3.05 8.08 31.23 0.25 -2.80 16 30 C -0.09 -2.02 7.84 30.89 0.24 -1.78 16 31 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.37 17.87 5.13 -92.71 -0.48 17.39 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.41 14.16 6.21 -92.70 -0.58 13.58 16 36 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.42 11.39 7.19 -92.71 -0.67 10.72 16 39 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.26 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.71 7.51 -2.39 -0.02 1.70 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -69.43 395.02 1.09 -68.34 By element: Atomic # 1 Polarization: 53.64 SS G_CDS: -0.69 Total: 52.95 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.96 Total: 11.63 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -6.02 Total: -136.25 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.17 Total: -43.85 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.43 1.09 -68.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203688662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.126 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds