Wall clock time and date at job start Wed Apr 1 2020 04:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46483 * 110.99896 * 66.04226 * 13 12 10 15 15 C 1.51630 * 111.12478 * 189.65094 * 14 13 12 16 16 C 1.51677 * 113.71320 * 312.97134 * 15 14 13 17 17 H 1.08999 * 112.64481 * 254.32766 * 16 15 14 18 18 C 1.54567 * 111.76554 * 125.34454 * 16 15 14 19 19 N 1.47740 * 85.84328 * 267.67810 * 18 16 15 20 20 C 1.34783 * 134.92631 * 154.13860 * 19 18 16 21 21 O 1.21281 * 119.99524 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.99788 * 0.02562 * 20 19 18 23 23 C 1.50699 * 109.46751 * 180.02562 * 22 20 19 24 24 C 1.34517 * 125.79255 * 89.99662 * 23 22 20 25 25 C 1.41380 * 106.84117 * 179.97438 * 24 23 22 26 26 C 1.34509 * 106.84140 * 0.02562 * 25 24 23 27 27 O 1.34300 * 108.42475 * 359.73434 * 26 25 24 28 28 C 1.46957 * 90.14812 * 334.11605 * 19 18 16 29 29 H 1.08997 * 112.93007 * 272.61316 * 28 19 18 30 30 C 1.46917 * 111.00058 * 188.92991 * 13 12 10 31 31 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 32 32 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47211 * 299.99931 * 12 10 9 34 34 H 1.08997 * 109.47040 * 59.99806 * 12 10 9 35 35 H 1.09001 * 109.14931 * 310.07600 * 14 13 12 36 36 H 1.08999 * 109.14743 * 69.23410 * 14 13 12 37 37 H 1.09006 * 108.63428 * 74.06948 * 15 14 13 38 38 H 1.09007 * 108.63354 * 192.01275 * 15 14 13 39 39 H 1.09002 * 113.81159 * 21.90903 * 18 16 15 40 40 H 1.08996 * 113.81258 * 153.44397 * 18 16 15 41 41 H 1.08996 * 109.46831 * 299.99432 * 22 20 19 42 42 H 1.08990 * 109.47269 * 59.99891 * 22 20 19 43 43 H 1.08002 * 126.57358 * 359.97008 * 24 23 22 44 44 H 1.08004 * 126.57624 * 180.02562 * 25 24 23 45 45 H 1.08000 * 125.78980 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.43983 * 292.22757 * 30 13 12 47 47 H 1.08999 * 109.44344 * 52.11221 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2126 6 1 3.1019 1.6965 -1.2125 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 7 2.1984 -5.9794 -0.0305 14 6 2.9626 -6.0240 1.2185 15 6 4.1037 -7.0182 1.1258 16 6 3.6975 -8.3608 0.5486 17 1 3.6337 -9.1415 1.3066 18 6 4.5741 -8.7528 -0.6626 19 7 3.5361 -8.1017 -1.4880 20 6 3.5151 -7.5111 -2.6993 21 8 2.4795 -7.0511 -3.1317 22 6 4.7780 -7.4234 -3.5168 23 6 4.4860 -6.7224 -4.8185 24 6 4.5674 -5.3971 -5.0338 25 6 4.2105 -5.1789 -6.3844 26 6 3.9319 -6.3838 -6.9134 27 8 4.1057 -7.3156 -5.9620 28 6 2.5358 -8.3641 -0.4438 29 1 2.0649 -9.3421 -0.5431 30 6 1.5105 -7.2590 -0.2494 31 1 -0.4850 0.8401 0.0040 32 1 0.3534 -2.3906 -0.0118 33 1 0.6175 -4.9250 0.8660 34 1 0.6168 -4.9162 -0.9139 35 1 3.3675 -5.0334 1.4255 36 1 2.2996 -6.3157 2.0330 37 1 4.8869 -6.5921 0.4988 38 1 4.5077 -7.1788 2.1254 39 1 5.5392 -8.2469 -0.6894 40 1 4.6512 -9.8286 -0.8202 41 1 5.5308 -6.8622 -2.9633 42 1 5.1498 -8.4276 -3.7199 43 1 4.8508 -4.6442 -4.3132 44 1 4.1695 -4.2273 -6.8935 45 1 3.6253 -6.5708 -7.9319 46 1 0.8886 -7.4892 0.6156 47 1 0.8829 -7.1862 -1.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221883168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:50 Heat of formation + Delta-G solvation = 1.403612 kcal Electronic energy + Delta-G solvation = -31443.761574 eV Core-core repulsion = 27209.142564 eV Total energy + Delta-G solvation = -4234.619009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.42381 -41.00805 -38.52498 -37.86089 -35.86350 -33.77118 -33.02820 -32.21007 -31.92741 -31.13160 -29.69400 -28.50370 -26.72390 -25.82831 -24.03586 -23.58602 -21.87206 -21.61639 -20.85890 -19.82594 -19.13097 -17.97323 -17.80824 -17.28063 -17.10840 -16.38764 -15.95645 -15.58948 -15.43567 -14.98371 -14.82265 -14.61147 -14.43993 -13.96967 -13.89286 -13.58323 -13.51163 -13.11534 -12.84438 -12.67587 -12.64140 -12.52935 -12.34079 -12.29978 -11.83731 -11.71864 -11.49709 -11.44359 -11.29172 -11.04817 -10.91894 -10.41713 -10.34677 -10.30015 -10.15746 -9.74463 -9.49330 -9.39575 -8.57710 -8.33473 -8.29211 -7.90108 -7.73342 -6.35441 -3.75991 1.79940 2.65942 2.87630 2.92883 3.15829 3.23529 3.28753 3.33045 3.97372 4.00833 4.19334 4.32920 4.43751 4.64980 4.73225 4.91198 5.02802 5.04877 5.16111 5.21425 5.23206 5.26809 5.28953 5.30785 5.33311 5.42369 5.52368 5.58939 5.65737 5.86529 5.87329 5.93009 5.95424 6.01058 6.09252 6.12335 6.13374 6.23112 6.36314 6.43188 6.54338 6.65578 7.24842 7.41188 7.52789 7.60435 7.85271 8.12775 8.39844 8.68975 9.24314 9.61905 10.14008 10.82476 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.003710 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.519837 B = 7545.320816 C = 9917.696563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.101 0.899 9 N -0.566 5.566 10 C 0.448 3.552 11 O -0.578 6.578 12 C 0.049 3.951 13 N -0.497 5.497 14 C 0.052 3.948 15 C -0.090 4.090 16 C -0.114 4.114 17 H 0.088 0.912 18 C 0.098 3.902 19 N -0.627 5.627 20 C 0.547 3.453 21 O -0.517 6.517 22 C -0.052 4.052 23 C 0.002 3.998 24 C -0.187 4.187 25 C -0.209 4.209 26 C -0.046 4.046 27 O -0.177 6.177 28 C 0.150 3.850 29 H 0.089 0.911 30 C 0.049 3.951 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.018 0.982 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.200 0.800 46 H 0.041 0.959 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 -20.273 -3.083 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.426 4.426 8 H 0.119 0.881 9 N -0.202 5.202 10 C 0.234 3.766 11 O -0.462 6.462 12 C -0.082 4.082 13 N -0.221 5.221 14 C -0.075 4.075 15 C -0.128 4.128 16 C -0.133 4.133 17 H 0.106 0.894 18 C -0.025 4.025 19 N -0.364 5.364 20 C 0.336 3.664 21 O -0.391 6.391 22 C -0.091 4.091 23 C -0.048 4.048 24 C -0.206 4.206 25 C -0.228 4.228 26 C -0.113 4.113 27 O -0.073 6.073 28 C 0.046 3.954 29 H 0.107 0.893 30 C -0.080 4.080 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.036 0.964 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.138 0.862 42 H 0.121 0.879 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.217 0.783 46 H 0.059 0.941 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.975 -19.963 -3.971 21.861 hybrid contribution -0.866 0.980 0.521 1.408 sum 7.109 -18.983 -3.450 20.562 Atomic orbital electron populations 1.69611 1.05917 1.28136 1.50780 1.25240 0.95602 0.99623 0.97478 0.85942 0.78765 0.80635 0.78994 1.21012 1.19982 1.19941 1.19621 0.93246 0.82258 1.47513 0.88073 1.41860 1.09170 1.04583 1.64611 1.19712 0.88374 0.84511 0.84029 1.90461 1.13687 1.86925 1.55121 1.21813 0.93932 0.91185 1.01311 1.61496 1.24501 1.00747 1.35310 1.21858 0.94911 1.01661 0.89114 1.20759 0.99132 0.92453 1.00461 1.22654 0.95699 0.99107 0.95816 0.89354 1.23587 0.93622 0.97561 0.87732 1.49582 1.12807 1.57762 1.16219 1.19733 0.89996 0.77540 0.79130 1.90733 1.33226 1.46025 1.69136 1.19962 0.97618 1.02396 0.89162 1.21432 1.04726 0.91987 0.86641 1.21636 1.06356 0.95378 0.97224 1.21830 1.06676 0.98877 0.95425 1.23906 1.06359 0.86977 0.94104 1.83939 1.67271 1.37600 1.18521 1.22164 0.91367 0.97546 0.84276 0.89282 1.22003 0.95064 0.89718 1.01246 0.91902 0.77542 0.93772 0.89384 0.87916 0.96424 0.91037 0.91663 0.89841 0.89939 0.86169 0.87899 0.83294 0.83514 0.78319 0.94094 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 13.05 55.50 0.72 -24.50 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.87 5.29 -10.96 -0.06 -14.92 16 10 C 0.45 10.98 7.41 -10.99 -0.08 10.90 16 11 O -0.58 -15.70 13.96 5.55 0.08 -15.62 16 12 C 0.05 0.95 5.44 -4.97 -0.03 0.92 16 13 N -0.50 -8.66 4.31 -237.92 -1.03 -9.68 16 14 C 0.05 0.83 5.04 -4.74 -0.02 0.81 16 15 C -0.09 -1.08 5.75 -28.10 -0.16 -1.24 16 16 C -0.11 -1.05 4.39 -90.64 -0.40 -1.45 16 17 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 18 C 0.10 0.79 8.04 -2.92 -0.02 0.77 16 19 N -0.63 -7.79 3.30 -172.91 -0.57 -8.36 16 20 C 0.55 8.44 7.97 -10.98 -0.09 8.35 16 21 O -0.52 -10.36 15.77 5.56 0.09 -10.27 16 22 C -0.05 -0.64 6.01 -29.04 -0.17 -0.81 16 23 C 0.00 0.03 5.81 -35.62 -0.21 -0.17 16 24 C -0.19 -2.95 10.81 -39.70 -0.43 -3.38 16 25 C -0.21 -2.92 10.91 -39.71 -0.43 -3.35 16 26 C -0.05 -0.58 12.09 29.41 0.36 -0.22 16 27 O -0.18 -2.60 10.65 5.70 0.06 -2.54 16 28 C 0.15 1.71 4.43 -68.68 -0.30 1.40 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 C 0.05 0.69 4.84 -4.32 -0.02 0.67 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.39 9.96 7.90 -40.82 -0.32 9.64 16 33 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.09 1.70 7.98 -51.93 -0.41 1.29 16 35 H 0.10 2.02 5.74 -51.93 -0.30 1.73 16 36 H 0.02 0.26 8.03 -51.93 -0.42 -0.16 16 37 H 0.07 0.97 7.37 -51.93 -0.38 0.59 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.61 7.68 -51.93 -0.40 0.21 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 44 H 0.15 1.75 8.06 -52.48 -0.42 1.32 16 45 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.04 0.51 8.04 -51.93 -0.42 0.09 16 47 H 0.09 1.39 7.45 -51.93 -0.39 1.00 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -36.44 388.11 -8.91 -45.35 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -6.77 Total: 13.12 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.26 Total: 5.10 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.93 Total: -57.46 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: 0.23 Total: -28.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.44 -8.91 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221883168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.750 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds