Wall clock time and date at job start Wed Apr 1 2020 04:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46483 * 110.99896 * 66.04226 * 13 12 10 15 15 C 1.51630 * 111.12478 * 189.65094 * 14 13 12 16 16 C 1.51677 * 113.71320 * 312.97134 * 15 14 13 17 17 H 1.08999 * 112.64481 * 254.32766 * 16 15 14 18 18 C 1.54567 * 111.76554 * 125.34454 * 16 15 14 19 19 N 1.47740 * 85.84328 * 267.67810 * 18 16 15 20 20 C 1.34783 * 134.92631 * 154.13860 * 19 18 16 21 21 O 1.21281 * 119.99524 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.99788 * 0.02562 * 20 19 18 23 23 C 1.50699 * 109.46751 * 180.02562 * 22 20 19 24 24 C 1.34517 * 125.79255 * 89.99662 * 23 22 20 25 25 C 1.41380 * 106.84117 * 179.97438 * 24 23 22 26 26 C 1.34509 * 106.84140 * 0.02562 * 25 24 23 27 27 O 1.34300 * 108.42475 * 359.73434 * 26 25 24 28 28 C 1.46957 * 90.14812 * 334.11605 * 19 18 16 29 29 H 1.08997 * 112.93007 * 272.61316 * 28 19 18 30 30 C 1.46917 * 111.00058 * 188.92991 * 13 12 10 31 31 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 32 32 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47211 * 299.99931 * 12 10 9 34 34 H 1.08997 * 109.47040 * 59.99806 * 12 10 9 35 35 H 1.09001 * 109.14931 * 310.07600 * 14 13 12 36 36 H 1.08999 * 109.14743 * 69.23410 * 14 13 12 37 37 H 1.09006 * 108.63428 * 74.06948 * 15 14 13 38 38 H 1.09007 * 108.63354 * 192.01275 * 15 14 13 39 39 H 1.09002 * 113.81159 * 21.90903 * 18 16 15 40 40 H 1.08996 * 113.81258 * 153.44397 * 18 16 15 41 41 H 1.08996 * 109.46831 * 299.99432 * 22 20 19 42 42 H 1.08990 * 109.47269 * 59.99891 * 22 20 19 43 43 H 1.08002 * 126.57358 * 359.97008 * 24 23 22 44 44 H 1.08004 * 126.57624 * 180.02562 * 25 24 23 45 45 H 1.08000 * 125.78980 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.43983 * 292.22757 * 30 13 12 47 47 H 1.08999 * 109.44344 * 52.11221 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2126 6 1 3.1019 1.6965 -1.2125 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 7 2.1984 -5.9794 -0.0305 14 6 2.9626 -6.0240 1.2185 15 6 4.1037 -7.0182 1.1258 16 6 3.6975 -8.3608 0.5486 17 1 3.6337 -9.1415 1.3066 18 6 4.5741 -8.7528 -0.6626 19 7 3.5361 -8.1017 -1.4880 20 6 3.5151 -7.5111 -2.6993 21 8 2.4795 -7.0511 -3.1317 22 6 4.7780 -7.4234 -3.5168 23 6 4.4860 -6.7224 -4.8185 24 6 4.5674 -5.3971 -5.0338 25 6 4.2105 -5.1789 -6.3844 26 6 3.9319 -6.3838 -6.9134 27 8 4.1057 -7.3156 -5.9620 28 6 2.5358 -8.3641 -0.4438 29 1 2.0649 -9.3421 -0.5431 30 6 1.5105 -7.2590 -0.2494 31 1 -0.4850 0.8401 0.0040 32 1 0.3534 -2.3906 -0.0118 33 1 0.6175 -4.9250 0.8660 34 1 0.6168 -4.9162 -0.9139 35 1 3.3675 -5.0334 1.4255 36 1 2.2996 -6.3157 2.0330 37 1 4.8869 -6.5921 0.4988 38 1 4.5077 -7.1788 2.1254 39 1 5.5392 -8.2469 -0.6894 40 1 4.6512 -9.8286 -0.8202 41 1 5.5308 -6.8622 -2.9633 42 1 5.1498 -8.4276 -3.7199 43 1 4.8508 -4.6442 -4.3132 44 1 4.1695 -4.2273 -6.8935 45 1 3.6253 -6.5708 -7.9319 46 1 0.8886 -7.4892 0.6156 47 1 0.8829 -7.1862 -1.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221883168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:49 Heat of formation + Delta-G solvation = -25.783465 kcal Electronic energy + Delta-G solvation = -31444.940494 eV Core-core repulsion = 27209.142564 eV Total energy + Delta-G solvation = -4235.797929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.50578 -41.96806 -40.25881 -39.17879 -37.24658 -35.84928 -34.13788 -33.42446 -33.20353 -32.88577 -30.81926 -29.77489 -27.77853 -27.36635 -25.69810 -24.64805 -22.92810 -22.72490 -21.93081 -21.10388 -20.82169 -19.90745 -18.97822 -18.31927 -18.17747 -17.72918 -17.26521 -16.88718 -16.52299 -16.42970 -16.37230 -16.13305 -15.66788 -15.61774 -15.27482 -14.99169 -14.58629 -14.41401 -14.16368 -13.81868 -13.73547 -13.70684 -13.57213 -13.54640 -13.18008 -13.13705 -12.96348 -12.78242 -12.66532 -12.45972 -12.32836 -12.14664 -12.02509 -11.59066 -11.35331 -11.28728 -10.88774 -10.59977 -10.27502 -10.01976 -9.47882 -9.39962 -9.11394 -8.47925 -5.97139 0.72729 1.37087 1.38340 1.49917 1.61411 1.79873 1.93239 2.02796 2.18616 2.26338 2.75477 3.18243 3.32316 3.41466 3.55074 3.69050 3.87613 4.07943 4.08878 4.12337 4.13826 4.22735 4.32142 4.36096 4.36323 4.43230 4.46603 4.53507 4.58722 4.62224 4.68889 4.79168 4.85597 4.89847 4.97617 5.00433 5.08840 5.14848 5.23963 5.32638 5.37728 5.49189 5.55239 5.89644 6.11787 6.15649 6.30931 6.58330 6.89909 7.10363 7.32761 7.53368 8.09065 8.69717 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.003710 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.519837 B = 7545.320816 C = 9917.696563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.608 6.608 12 C 0.061 3.939 13 N -0.517 5.517 14 C 0.053 3.947 15 C -0.087 4.087 16 C -0.103 4.103 17 H 0.133 0.867 18 C 0.105 3.895 19 N -0.633 5.633 20 C 0.535 3.465 21 O -0.580 6.580 22 C -0.048 4.048 23 C -0.005 4.005 24 C -0.223 4.223 25 C -0.233 4.233 26 C -0.035 4.035 27 O -0.185 6.185 28 C 0.140 3.860 29 H 0.124 0.876 30 C 0.049 3.951 31 H 0.277 0.723 32 H 0.393 0.607 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.161 0.839 45 H 0.244 0.756 46 H 0.064 0.936 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.343 -22.998 -2.445 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.232 3.768 11 O -0.494 6.494 12 C -0.070 4.070 13 N -0.241 5.241 14 C -0.075 4.075 15 C -0.125 4.125 16 C -0.121 4.121 17 H 0.151 0.849 18 C -0.016 4.016 19 N -0.368 5.368 20 C 0.325 3.675 21 O -0.460 6.460 22 C -0.087 4.087 23 C -0.056 4.056 24 C -0.242 4.242 25 C -0.252 4.252 26 C -0.102 4.102 27 O -0.081 6.081 28 C 0.037 3.963 29 H 0.141 0.859 30 C -0.080 4.080 31 H 0.087 0.913 32 H 0.227 0.773 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.178 0.822 45 H 0.260 0.740 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.772 -22.739 -3.286 24.593 hybrid contribution -1.128 1.804 0.358 2.157 sum 7.644 -20.935 -2.928 22.479 Atomic orbital electron populations 1.69685 1.06950 1.29340 1.50450 1.26075 0.96546 1.02483 0.96265 0.84976 0.77762 0.76518 0.78982 1.19349 1.19300 1.19942 1.19616 0.92628 0.83918 1.49956 0.90304 1.41946 1.09180 1.04813 1.65435 1.20631 0.88335 0.85725 0.82081 1.90433 1.15341 1.87690 1.55940 1.21615 0.93851 0.89518 1.02015 1.61469 1.24686 1.01477 1.36502 1.21798 0.96197 1.00530 0.88931 1.20748 0.96755 0.93039 1.01919 1.22592 0.94476 0.98304 0.96777 0.84881 1.23918 0.92826 0.99621 0.85197 1.49821 1.14928 1.56729 1.15336 1.20231 0.89983 0.77169 0.80095 1.90695 1.35372 1.48960 1.70935 1.20071 0.96599 1.04362 0.87636 1.21844 1.04121 0.91951 0.87637 1.21765 1.08267 0.95960 0.98239 1.22113 1.07722 1.00399 0.94952 1.24736 1.04259 0.86044 0.95188 1.83947 1.67235 1.38177 1.18785 1.22522 0.91396 0.97598 0.84815 0.85893 1.22050 0.96030 0.88970 1.00901 0.91313 0.77341 0.91657 0.89760 0.92687 0.94824 0.93287 0.89039 0.89043 0.85759 0.85117 0.84228 0.85073 0.82166 0.73987 0.91858 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 13.05 21.66 0.28 -51.94 16 2 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 3 Si 0.99 44.60 29.55 68.60 2.03 46.63 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.33 -19.77 9.68 84.04 0.81 -18.95 16 8 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.58 -31.87 5.29 -306.99 -1.62 -33.49 16 10 C 0.45 23.04 7.41 87.66 0.65 23.69 16 11 O -0.61 -35.14 13.96 -3.07 -0.04 -35.18 16 12 C 0.06 2.48 5.44 85.56 0.47 2.95 16 13 N -0.52 -18.27 4.31 -906.65 -3.91 -22.18 16 14 C 0.05 1.68 5.04 85.93 0.43 2.11 16 15 C -0.09 -1.90 5.75 29.71 0.17 -1.73 16 16 C -0.10 -1.44 4.39 -10.75 -0.05 -1.49 16 17 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 18 C 0.11 1.24 8.04 86.43 0.69 1.93 16 19 N -0.63 -14.39 3.30 -819.34 -2.70 -17.09 16 20 C 0.54 16.45 7.97 87.66 0.70 17.15 16 21 O -0.58 -24.20 15.77 -3.03 -0.05 -24.25 16 22 C -0.05 -1.14 6.01 29.10 0.17 -0.97 16 23 C -0.01 -0.16 5.81 24.83 0.14 -0.02 16 24 C -0.22 -7.51 10.81 22.19 0.24 -7.27 16 25 C -0.23 -6.70 10.91 22.19 0.24 -6.45 16 26 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 27 O -0.18 -5.37 10.65 -2.53 -0.03 -5.40 16 28 C 0.14 2.75 4.43 44.26 0.20 2.95 16 29 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 30 C 0.05 1.33 4.84 85.97 0.42 1.75 16 31 H 0.28 14.68 8.31 -92.70 -0.77 13.91 16 32 H 0.39 20.97 7.90 -92.71 -0.73 20.24 16 33 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 34 H 0.08 3.44 7.98 -2.39 -0.02 3.42 16 35 H 0.05 2.27 5.74 -2.39 -0.01 2.25 16 36 H 0.03 0.93 8.03 -2.39 -0.02 0.91 16 37 H 0.05 1.29 7.37 -2.38 -0.02 1.27 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.09 0.99 7.68 -2.39 -0.02 0.97 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 45 H 0.24 3.39 8.06 -2.91 -0.02 3.37 16 46 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 47 H 0.06 1.97 7.45 -2.39 -0.02 1.95 16 Total: -1.00 -86.52 388.11 0.80 -85.73 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: 0.27 Total: 41.93 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.57 Total: 15.25 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -7.95 Total: -124.70 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -0.12 Total: -64.83 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -86.52 0.80 -85.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221883168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.944 kcal (2) G-P(sol) polarization free energy of solvation -86.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds