Wall clock time and date at job start Wed Apr 1 2020 04:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00336 * 2 1 4 4 H 1.48489 * 109.47302 * 270.00179 * 3 2 1 5 5 H 1.48505 * 109.46689 * 30.00250 * 3 2 1 6 6 H 1.48499 * 109.47361 * 149.99603 * 3 2 1 7 7 C 1.38814 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00200 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64795 * 0.02562 * 9 7 2 11 11 C 1.54333 * 107.27255 * 178.91943 * 10 9 7 12 12 C 1.55157 * 102.93930 * 337.80748 * 11 10 9 13 13 H 1.08993 * 111.00478 * 277.38582 * 12 11 10 14 14 O 1.42904 * 110.99977 * 153.57205 * 12 11 10 15 15 C 1.35520 * 116.99665 * 149.99967 * 14 12 11 16 16 N 1.32781 * 120.47346 * 0.02736 * 15 14 12 17 17 C 1.32289 * 120.66093 * 179.97438 * 16 15 14 18 18 O 1.35445 * 119.16483 * 179.97438 * 17 16 15 19 19 N 1.32318 * 121.66650 * 359.97317 * 17 16 15 20 20 C 1.32455 * 120.90466 * 359.75510 * 19 17 16 21 21 C 1.38227 * 119.24699 * 0.51896 * 20 19 17 22 22 C 1.50700 * 120.76651 * 179.74090 * 21 20 19 23 23 H 1.09002 * 109.48161 * 179.72513 * 22 21 20 24 24 C 1.52953 * 109.48099 * 59.69650 * 22 21 20 25 25 C 1.52989 * 109.80393 * 176.42138 * 24 22 21 26 26 C 1.53236 * 109.40762 * 63.59033 * 25 24 22 27 27 C 1.51267 * 108.53780 * 305.37228 * 26 25 24 28 28 O 1.20764 * 120.84769 * 231.37239 * 27 26 25 29 29 C 1.51265 * 118.29933 * 51.35086 * 27 26 25 30 30 C 1.47428 * 125.64811 * 179.97438 * 9 7 2 31 31 H 0.96995 * 119.99864 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.88319 * 59.50454 * 10 9 7 33 33 H 1.08996 * 109.88805 * 298.33949 * 10 9 7 34 34 H 1.08995 * 110.71936 * 219.44338 * 11 10 9 35 35 H 1.08995 * 110.86834 * 96.23848 * 11 10 9 36 36 H 0.96711 * 114.00066 * 89.99784 * 18 17 16 37 37 H 1.08009 * 120.37627 * 180.26987 * 20 19 17 38 38 H 1.08995 * 109.42108 * 296.51469 * 24 22 21 39 39 H 1.09000 * 109.41504 * 56.30535 * 24 22 21 40 40 H 1.08995 * 109.47940 * 303.61309 * 25 24 22 41 41 H 1.08998 * 109.49551 * 183.57639 * 25 24 22 42 42 H 1.09005 * 109.62245 * 185.66223 * 26 25 24 43 43 H 1.08997 * 109.78130 * 65.18448 * 26 25 24 44 44 H 1.08998 * 109.62614 * 188.94161 * 29 27 26 45 45 H 1.08998 * 109.78362 * 68.45860 * 29 27 26 46 46 H 1.09009 * 110.36362 * 85.31220 * 30 9 7 47 47 H 1.08999 * 110.36639 * 322.99092 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4485 -4.0442 -0.0279 12 6 0.8523 -4.6560 -0.6118 13 1 0.8577 -4.5966 -1.7001 14 8 1.0248 -6.0055 -0.1743 15 6 1.6818 -6.8444 -1.0116 16 7 2.1363 -6.4092 -2.1808 17 6 2.7786 -7.2248 -3.0008 18 8 3.2289 -6.7489 -4.1863 19 7 2.9922 -8.4936 -2.6921 20 6 2.5712 -8.9937 -1.5402 21 6 1.8906 -8.1762 -0.6575 22 6 1.3912 -8.7109 0.6600 23 1 0.8889 -7.9143 1.2087 24 6 2.5731 -9.2293 1.4810 25 6 2.0860 -9.6922 2.8554 26 6 1.1268 -10.8748 2.6841 27 6 0.0212 -10.4639 1.7369 28 8 -1.1389 -10.6165 2.0359 29 6 0.4059 -9.8566 0.4060 30 6 1.9334 -3.7312 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5569 -2.0520 -0.8843 33 1 -0.5551 -2.0846 0.9011 34 1 -1.2981 -4.2513 -0.6786 35 1 -0.6341 -4.4207 0.9780 36 1 4.1259 -6.3893 -4.1506 37 1 2.7541 -10.0296 -1.2950 38 1 3.0365 -10.0671 0.9600 39 1 3.3054 -8.4317 1.6055 40 1 1.5672 -8.8724 3.3522 41 1 2.9396 -10.0010 3.4588 42 1 0.7000 -11.1430 3.6506 43 1 1.6640 -11.7287 2.2714 44 1 -0.4840 -9.4706 -0.0912 45 1 0.8773 -10.6126 -0.2220 46 1 2.1659 -4.0423 1.0191 47 1 2.8332 -3.7403 -0.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231380845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:10 Heat of formation + Delta-G solvation = -42.023261 kcal Electronic energy + Delta-G solvation = -30965.553149 eV Core-core repulsion = 26729.051009 eV Total energy + Delta-G solvation = -4236.502140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66055 -40.10388 -39.10892 -37.78973 -36.73253 -36.35785 -33.46486 -33.00206 -32.19656 -29.89097 -29.32287 -28.75740 -27.46450 -25.20593 -24.63318 -23.92163 -22.77745 -21.55675 -20.73448 -20.24937 -19.73792 -19.38592 -18.11492 -17.53147 -16.93700 -16.48452 -16.28881 -15.64628 -15.20546 -15.05773 -14.87521 -14.79958 -14.66876 -14.33503 -14.27612 -13.97464 -13.90209 -13.21544 -13.07057 -12.97846 -12.49549 -12.46751 -12.21460 -12.12247 -12.03108 -11.81398 -11.49405 -11.34155 -11.06723 -11.01056 -10.94564 -10.88950 -10.77502 -10.40752 -10.17102 -10.03275 -9.94195 -9.76071 -9.72430 -9.36854 -8.88958 -8.66383 -6.92842 -5.77530 -3.12280 0.58287 0.98929 1.65818 2.71916 3.02154 3.37466 3.42190 3.44305 3.47941 3.73095 3.97542 4.19720 4.30269 4.44516 4.46053 4.55050 4.65380 4.74176 4.82374 4.99245 5.02339 5.06813 5.14305 5.18730 5.26464 5.35432 5.41441 5.49706 5.53369 5.62532 5.68332 5.70567 5.76312 5.82407 5.87005 5.97377 6.14286 6.31075 6.37255 6.48191 6.53855 6.65169 7.17033 7.19140 7.36864 7.47059 7.50641 7.74269 7.85095 8.17137 9.14171 9.73860 10.37915 11.34317 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.002919 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.444779 B = 9588.443445 C =11001.483367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.180 3.820 11 C -0.140 4.140 12 C 0.066 3.934 13 H 0.101 0.899 14 O -0.283 6.283 15 C 0.402 3.598 16 N -0.573 5.573 17 C 0.531 3.469 18 O -0.458 6.458 19 N -0.551 5.551 20 C 0.194 3.806 21 C -0.221 4.221 22 C -0.023 4.023 23 H 0.099 0.901 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.170 4.170 27 C 0.364 3.636 28 O -0.456 6.456 29 C -0.163 4.163 30 C 0.130 3.870 31 H 0.254 0.746 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.176 0.824 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.026 0.974 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -23.394 1.186 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.055 3.945 11 C -0.178 4.178 12 C 0.010 3.990 13 H 0.119 0.881 14 O -0.185 6.185 15 C 0.214 3.786 16 N -0.314 5.314 17 C 0.227 3.773 18 O -0.262 6.262 19 N -0.281 5.281 20 C 0.032 3.968 21 C -0.227 4.227 22 C -0.043 4.043 23 H 0.117 0.883 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.208 4.208 27 C 0.239 3.761 28 O -0.328 6.328 29 C -0.201 4.201 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.274 0.726 37 H 0.193 0.807 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.044 0.956 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.176 -22.982 0.489 23.563 hybrid contribution 0.701 1.018 0.490 1.329 sum 5.876 -21.964 0.979 22.758 Atomic orbital electron populations 1.69933 1.04919 1.25262 1.56753 1.24818 0.95761 0.97742 1.01929 0.86080 0.78570 0.83240 0.77625 1.21497 1.21578 1.20642 1.19044 0.90469 0.82073 1.44284 0.90318 1.44311 1.01639 0.99517 1.87368 1.21191 0.84470 0.86993 1.01803 1.23124 0.94747 0.99206 1.00733 1.24047 0.98549 0.75588 1.00850 0.88067 1.86281 1.67727 1.23098 1.41400 1.19717 0.85545 0.88108 0.85207 1.67618 1.18310 1.40649 1.04856 1.19878 0.88917 0.84181 0.84327 1.84693 1.37301 1.80197 1.23966 1.68020 1.25562 1.14478 1.20019 1.22666 0.88470 0.99589 0.86108 1.20542 1.08522 0.92449 1.01187 1.19816 0.95389 0.97248 0.91853 0.88303 1.21700 0.97174 1.01490 0.95130 1.21515 0.98892 0.97197 0.97525 1.22335 0.97573 1.00241 1.00641 1.24837 0.89479 0.73319 0.88490 1.90435 1.22617 1.43685 1.76113 1.22432 1.01780 0.98898 0.96973 1.21748 0.94170 0.86396 0.97408 0.93581 0.92986 0.93127 0.91377 0.91178 0.72648 0.80739 0.91057 0.90554 0.90948 0.90327 0.89341 0.88291 0.89009 0.88208 0.95643 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.31 55.49 0.57 -26.22 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.38 3.39 -170.08 -0.58 -15.96 16 10 C 0.18 4.34 5.37 -3.06 -0.02 4.33 16 11 C -0.14 -2.64 6.69 -24.89 -0.17 -2.81 16 12 C 0.07 1.22 3.36 -24.59 -0.08 1.14 16 13 H 0.10 1.98 6.98 -51.93 -0.36 1.61 16 14 O -0.28 -4.49 8.83 -18.25 -0.16 -4.65 16 15 C 0.40 5.71 7.50 -16.72 -0.13 5.59 16 16 N -0.57 -8.80 8.81 -14.79 -0.13 -8.93 16 17 C 0.53 7.20 8.71 -91.28 -0.80 6.41 16 18 O -0.46 -5.49 13.64 -18.03 -0.25 -5.74 16 19 N -0.55 -6.56 10.46 -14.80 -0.15 -6.72 16 20 C 0.19 1.78 9.99 -17.29 -0.17 1.61 16 21 C -0.22 -2.31 4.81 -104.20 -0.50 -2.81 16 22 C -0.02 -0.19 2.37 -91.67 -0.22 -0.41 16 23 H 0.10 1.02 7.11 -51.93 -0.37 0.65 16 24 C -0.12 -0.70 4.86 -26.76 -0.13 -0.83 16 25 C -0.11 -0.63 5.94 -26.61 -0.16 -0.78 16 26 C -0.17 -0.97 6.17 -27.48 -0.17 -1.14 16 27 C 0.36 3.19 6.72 -28.48 -0.19 3.00 16 28 O -0.46 -5.92 17.89 6.00 0.11 -5.82 16 29 C -0.16 -1.24 5.35 -27.48 -0.15 -1.38 16 30 C 0.13 2.74 6.97 -2.54 -0.02 2.73 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.38 7.38 -51.93 -0.38 0.99 16 33 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.41 2.82 9.06 45.56 0.41 3.24 16 37 H 0.18 0.89 7.27 -52.48 -0.38 0.51 16 38 H 0.07 0.28 7.58 -51.93 -0.39 -0.11 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.50 7.33 -51.93 -0.38 0.12 16 46 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 47 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 382.55 15.07 5.76 5.76 Total: -1.00 -34.61 382.55 -9.01 -43.62 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.02 Total: -0.04 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -3.14 Total: 7.78 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.29 Total: -57.82 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.30 Total: -16.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.61 -9.01 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231380845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.599 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds