Wall clock time and date at job start Wed Apr 1 2020 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99476 * 2 1 4 4 H 1.48502 * 109.47091 * 239.99650 * 3 2 1 5 5 H 1.48498 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46897 * 120.00222 * 3 2 1 7 7 C 1.37873 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.53490 * 114.20706 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98806 * 220.15019 * 10 9 7 12 12 C 1.34771 * 136.05679 * 207.09013 * 11 10 9 13 13 O 1.21283 * 120.00619 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99860 * 179.97438 * 12 11 10 15 15 H 1.08995 * 115.59361 * 325.82120 * 14 12 11 16 16 C 1.53214 * 117.52311 * 111.64422 * 14 12 11 17 17 C 1.52094 * 59.75682 * 107.42097 * 16 14 12 18 18 C 1.52617 * 129.80639 * 119.06978 * 17 16 14 19 19 N 1.47256 * 87.76706 * 113.66786 * 18 17 16 20 20 C 1.34766 * 135.89969 * 206.19434 * 19 18 17 21 21 O 1.21283 * 120.00383 * 0.02562 * 20 19 18 22 22 C 1.50707 * 120.00157 * 180.02562 * 20 19 18 23 23 H 1.08998 * 110.21356 * 320.47991 * 22 20 19 24 24 C 1.54478 * 110.24424 * 82.49941 * 22 20 19 25 25 C 1.54625 * 101.76116 * 144.41790 * 24 22 20 26 26 C 1.51276 * 104.20043 * 335.20150 * 25 24 22 27 27 O 1.21283 * 124.94654 * 196.27494 * 26 25 24 28 28 N 1.34423 * 110.11190 * 16.25727 * 26 25 24 29 29 C 1.47256 * 88.19745 * 26.23551 * 19 18 17 30 30 C 1.47064 * 87.88052 * 27.34400 * 11 10 9 31 31 H 0.96998 * 119.99765 * 359.97438 * 1 2 3 32 32 H 1.08999 * 113.28330 * 313.07112 * 9 7 2 33 33 H 1.09004 * 113.46809 * 105.36852 * 10 9 7 34 34 H 1.08999 * 113.47293 * 334.93394 * 10 9 7 35 35 H 1.09004 * 117.52380 * 0.02562 * 16 14 12 36 36 H 1.08994 * 117.56801 * 214.81608 * 16 14 12 37 37 H 1.09002 * 113.51551 * 358.92915 * 18 17 16 38 38 H 1.08995 * 113.51393 * 228.40672 * 18 17 16 39 39 H 1.08999 * 110.97049 * 262.54002 * 24 22 20 40 40 H 1.08999 * 110.96811 * 26.29992 * 24 22 20 41 41 H 1.09010 * 110.48437 * 216.52400 * 25 24 22 42 42 H 1.09002 * 110.48510 * 93.88244 * 25 24 22 43 43 H 0.97003 * 124.34809 * 180.43219 * 28 26 25 44 44 H 1.09003 * 113.51264 * 88.43867 * 29 19 18 45 45 H 1.09000 * 113.51112 * 218.95921 * 29 19 18 46 46 H 1.09000 * 113.46694 * 87.44130 * 30 11 10 47 47 H 1.08999 * 113.46540 * 217.87744 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.1489 -3.7441 -0.0018 11 7 1.2068 -4.3589 -0.9490 12 6 0.8312 -5.6133 -1.2679 13 8 1.3284 -6.5595 -0.6948 14 6 -0.2067 -5.8403 -2.3367 15 1 -0.9908 -5.0859 -2.3995 16 6 0.2544 -6.4926 -3.6442 17 6 -0.5884 -7.2786 -2.6516 18 6 -1.9680 -7.9078 -2.8242 19 7 -1.3227 -9.2234 -2.6788 20 6 -1.5868 -10.4811 -3.0848 21 8 -2.5792 -10.7100 -3.7433 22 6 -0.6489 -11.6031 -2.7205 23 1 0.3856 -11.2671 -2.7911 24 6 -0.9518 -12.1110 -1.2934 25 6 -0.6791 -13.6265 -1.4337 26 6 -0.8857 -13.9060 -2.9060 27 8 -1.0433 -15.0075 -3.3886 28 7 -0.8696 -12.7559 -3.6016 29 6 -0.2634 -8.5655 -1.8955 30 6 0.8596 -3.0026 -1.3995 31 1 -0.4850 0.8400 0.0004 32 1 0.4439 -2.5306 0.7312 33 1 2.1886 -4.2516 0.9621 34 1 3.1371 -3.5663 -0.4260 35 1 1.3082 -6.7577 -3.7306 36 1 -0.2263 -6.1679 -4.5669 37 1 -2.4012 -7.7425 -3.8107 38 1 -2.6586 -7.6704 -2.0150 39 1 -0.2768 -11.6587 -0.5669 40 1 -1.9920 -11.9249 -1.0258 41 1 -1.3870 -14.1987 -0.8338 42 1 0.3450 -13.8585 -1.1414 43 1 -0.9890 -12.6955 -4.5623 44 1 -0.4824 -8.5093 -0.8292 45 1 0.7343 -8.9530 -2.1017 46 1 1.5079 -2.6294 -2.1924 47 1 -0.1992 -2.8784 -1.6266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269015272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:17 Heat of formation + Delta-G solvation = 8.071130 kcal Electronic energy + Delta-G solvation = -29604.434534 eV Core-core repulsion = 25370.104650 eV Total energy + Delta-G solvation = -4234.329884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.38124 -40.55949 -39.45060 -38.47933 -37.11564 -36.43476 -34.71166 -32.77825 -31.79229 -30.00290 -29.34216 -27.27981 -26.34190 -25.66897 -25.08632 -23.36238 -23.02794 -20.99457 -20.73683 -20.03336 -19.00206 -18.21012 -17.84229 -17.74775 -17.03631 -16.60840 -16.30483 -16.10741 -16.00275 -15.20399 -14.98412 -14.80744 -14.57411 -14.36937 -14.22428 -13.97372 -13.71827 -13.44201 -13.27155 -13.21602 -13.10710 -12.52165 -12.38193 -12.32659 -12.05406 -11.65376 -11.63853 -11.43404 -11.07463 -11.02260 -10.90863 -10.81387 -10.63079 -10.44282 -10.30371 -10.16530 -9.73837 -9.48933 -9.32571 -9.12947 -9.04695 -8.66848 -8.00899 -6.26870 -4.32879 2.07830 2.11161 2.33499 2.75227 2.99229 3.19237 3.23592 3.25490 3.29553 3.59126 3.78188 3.85287 3.96762 4.07392 4.25593 4.33969 4.40898 4.49888 4.62617 4.84804 4.93229 4.99772 5.06769 5.16125 5.17938 5.22624 5.28146 5.30585 5.37190 5.44111 5.46290 5.56336 5.63136 5.76335 5.94809 6.05325 6.13442 6.29430 6.32582 6.45683 6.52808 6.58743 6.69581 7.31816 7.45135 7.67089 7.70605 7.85367 8.07966 8.35846 8.59716 8.71097 9.34543 10.82708 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.001744 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.229850 B =16053.365687 C =16467.580916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.637 5.637 12 C 0.560 3.440 13 O -0.565 6.565 14 C -0.145 4.145 15 H 0.129 0.871 16 C -0.110 4.110 17 C -0.157 4.157 18 C 0.148 3.852 19 N -0.642 5.642 20 C 0.537 3.463 21 O -0.533 6.533 22 C 0.120 3.880 23 H 0.107 0.893 24 C -0.121 4.121 25 C -0.154 4.154 26 C 0.524 3.476 27 O -0.531 6.531 28 N -0.710 5.710 29 C 0.154 3.846 30 C 0.098 3.902 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.416 0.584 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -16.496 -4.207 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.016 3.984 10 C -0.021 4.021 11 N -0.369 5.369 12 C 0.349 3.651 13 O -0.446 6.446 14 C -0.167 4.167 15 H 0.147 0.853 16 C -0.147 4.147 17 C -0.158 4.158 18 C 0.025 3.975 19 N -0.377 5.377 20 C 0.325 3.675 21 O -0.409 6.409 22 C 0.010 3.990 23 H 0.125 0.875 24 C -0.159 4.159 25 C -0.194 4.194 26 C 0.310 3.690 27 O -0.407 6.407 28 N -0.366 5.366 29 C 0.032 3.968 30 C -0.024 4.024 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.255 0.745 44 H 0.119 0.881 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.708 -18.045 -4.518 18.680 hybrid contribution 0.307 1.359 -0.519 1.487 sum -1.402 -16.686 -5.038 17.486 Atomic orbital electron populations 1.69932 1.06074 1.27345 1.48844 1.25022 0.94876 0.99426 0.94136 0.86590 0.79604 0.82593 0.78864 1.20051 1.21203 1.20022 1.20858 0.92993 0.89533 1.52358 0.91864 1.20389 0.94743 0.91148 0.92141 1.23368 0.94275 0.93101 0.91389 1.49944 1.42121 1.04834 1.40007 1.18959 0.82270 0.81352 0.82494 1.90612 1.58225 1.40953 1.54784 1.22063 1.01417 0.95515 0.97721 0.85341 1.22771 1.00250 0.99246 0.92427 1.21947 0.97739 0.92039 1.04110 1.22404 0.93731 0.78365 1.02953 1.49564 1.28650 1.05808 1.53725 1.20123 0.86306 0.81309 0.79792 1.90758 1.28402 1.82126 1.39600 1.21511 0.99459 0.85976 0.92022 0.87519 1.22610 1.04485 0.94983 0.93817 1.22381 1.05542 0.96860 0.94655 1.20837 0.74768 0.83608 0.89788 1.90775 1.49836 1.24181 1.75940 1.45966 1.73691 1.06229 1.10724 1.22451 0.91646 0.86537 0.96191 1.23701 0.99869 0.76650 1.02220 0.92511 0.91305 0.92374 0.90803 0.87677 0.87206 0.89888 0.88712 0.87767 0.89306 0.87395 0.87096 0.74471 0.88089 0.89709 0.90656 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.89 13.26 55.43 0.74 -22.15 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 19.13 29.54 -169.99 -5.02 14.11 16 4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.52 -12.41 8.83 -34.44 -0.30 -12.72 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.03 0.75 3.79 -91.13 -0.35 0.41 16 10 C 0.10 1.90 8.17 -8.53 -0.07 1.83 16 11 N -0.64 -11.38 3.69 -185.10 -0.68 -12.07 16 12 C 0.56 9.10 7.86 -10.99 -0.09 9.02 16 13 O -0.56 -10.17 16.08 5.55 0.09 -10.09 16 14 C -0.15 -1.74 6.02 -92.12 -0.55 -2.30 16 15 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 16 C -0.11 -1.06 10.24 -27.08 -0.28 -1.34 16 17 C -0.16 -1.55 3.15 -155.76 -0.49 -2.04 16 18 C 0.15 1.36 8.63 -7.62 -0.07 1.29 16 19 N -0.64 -6.12 3.69 -184.13 -0.68 -6.80 16 20 C 0.54 5.62 7.26 -10.99 -0.08 5.54 16 21 O -0.53 -7.64 17.35 5.55 0.10 -7.55 16 22 C 0.12 0.90 3.75 -68.16 -0.26 0.65 16 23 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 24 C -0.12 -0.68 6.67 -25.10 -0.17 -0.85 16 25 C -0.15 -0.95 6.86 -26.75 -0.18 -1.13 16 26 C 0.52 5.38 8.43 -10.86 -0.09 5.29 16 27 O -0.53 -7.68 18.03 5.56 0.10 -7.58 16 28 N -0.71 -6.49 5.47 -53.88 -0.29 -6.78 16 29 C 0.15 1.42 6.94 -7.55 -0.05 1.37 16 30 C 0.10 1.84 8.00 -8.39 -0.07 1.78 16 31 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.07 1.64 8.11 -51.93 -0.42 1.22 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.57 7.90 -51.93 -0.41 0.16 16 41 H 0.11 0.59 8.14 -51.92 -0.42 0.16 16 42 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.42 3.82 8.96 -40.82 -0.37 3.45 16 44 H 0.10 0.96 8.12 -51.93 -0.42 0.54 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -31.79 401.60 -9.87 -41.66 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.08 Total: 2.78 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -3.19 Total: 8.40 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.92 Total: -47.79 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.29 Total: -25.21 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.79 -9.87 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269015272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.731 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds