Wall clock time and date at job start Wed Apr 1 2020 05:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99476 * 2 1 4 4 H 1.48502 * 109.47091 * 239.99650 * 3 2 1 5 5 H 1.48498 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46897 * 120.00222 * 3 2 1 7 7 C 1.37873 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.53490 * 114.20706 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98806 * 220.15019 * 10 9 7 12 12 C 1.34771 * 136.05679 * 207.09013 * 11 10 9 13 13 O 1.21283 * 120.00619 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99860 * 179.97438 * 12 11 10 15 15 H 1.08995 * 115.59361 * 325.82120 * 14 12 11 16 16 C 1.53214 * 117.52311 * 111.64422 * 14 12 11 17 17 C 1.52094 * 59.75682 * 107.42097 * 16 14 12 18 18 C 1.52617 * 129.80639 * 119.06978 * 17 16 14 19 19 N 1.47256 * 87.76706 * 113.66786 * 18 17 16 20 20 C 1.34766 * 135.89969 * 206.19434 * 19 18 17 21 21 O 1.21283 * 120.00383 * 0.02562 * 20 19 18 22 22 C 1.50707 * 120.00157 * 180.02562 * 20 19 18 23 23 H 1.08998 * 110.21356 * 320.47991 * 22 20 19 24 24 C 1.54478 * 110.24424 * 82.49941 * 22 20 19 25 25 C 1.54625 * 101.76116 * 144.41790 * 24 22 20 26 26 C 1.51276 * 104.20043 * 335.20150 * 25 24 22 27 27 O 1.21283 * 124.94654 * 196.27494 * 26 25 24 28 28 N 1.34423 * 110.11190 * 16.25727 * 26 25 24 29 29 C 1.47256 * 88.19745 * 26.23551 * 19 18 17 30 30 C 1.47064 * 87.88052 * 27.34400 * 11 10 9 31 31 H 0.96998 * 119.99765 * 359.97438 * 1 2 3 32 32 H 1.08999 * 113.28330 * 313.07112 * 9 7 2 33 33 H 1.09004 * 113.46809 * 105.36852 * 10 9 7 34 34 H 1.08999 * 113.47293 * 334.93394 * 10 9 7 35 35 H 1.09004 * 117.52380 * 0.02562 * 16 14 12 36 36 H 1.08994 * 117.56801 * 214.81608 * 16 14 12 37 37 H 1.09002 * 113.51551 * 358.92915 * 18 17 16 38 38 H 1.08995 * 113.51393 * 228.40672 * 18 17 16 39 39 H 1.08999 * 110.97049 * 262.54002 * 24 22 20 40 40 H 1.08999 * 110.96811 * 26.29992 * 24 22 20 41 41 H 1.09010 * 110.48437 * 216.52400 * 25 24 22 42 42 H 1.09002 * 110.48510 * 93.88244 * 25 24 22 43 43 H 0.97003 * 124.34809 * 180.43219 * 28 26 25 44 44 H 1.09003 * 113.51264 * 88.43867 * 29 19 18 45 45 H 1.09000 * 113.51112 * 218.95921 * 29 19 18 46 46 H 1.09000 * 113.46694 * 87.44130 * 30 11 10 47 47 H 1.08999 * 113.46540 * 217.87744 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.1489 -3.7441 -0.0018 11 7 1.2068 -4.3589 -0.9490 12 6 0.8312 -5.6133 -1.2679 13 8 1.3284 -6.5595 -0.6948 14 6 -0.2067 -5.8403 -2.3367 15 1 -0.9908 -5.0859 -2.3995 16 6 0.2544 -6.4926 -3.6442 17 6 -0.5884 -7.2786 -2.6516 18 6 -1.9680 -7.9078 -2.8242 19 7 -1.3227 -9.2234 -2.6788 20 6 -1.5868 -10.4811 -3.0848 21 8 -2.5792 -10.7100 -3.7433 22 6 -0.6489 -11.6031 -2.7205 23 1 0.3856 -11.2671 -2.7911 24 6 -0.9518 -12.1110 -1.2934 25 6 -0.6791 -13.6265 -1.4337 26 6 -0.8857 -13.9060 -2.9060 27 8 -1.0433 -15.0075 -3.3886 28 7 -0.8696 -12.7559 -3.6016 29 6 -0.2634 -8.5655 -1.8955 30 6 0.8596 -3.0026 -1.3995 31 1 -0.4850 0.8400 0.0004 32 1 0.4439 -2.5306 0.7312 33 1 2.1886 -4.2516 0.9621 34 1 3.1371 -3.5663 -0.4260 35 1 1.3082 -6.7577 -3.7306 36 1 -0.2263 -6.1679 -4.5669 37 1 -2.4012 -7.7425 -3.8107 38 1 -2.6586 -7.6704 -2.0150 39 1 -0.2768 -11.6587 -0.5669 40 1 -1.9920 -11.9249 -1.0258 41 1 -1.3870 -14.1987 -0.8338 42 1 0.3450 -13.8585 -1.1414 43 1 -0.9890 -12.6955 -4.5623 44 1 -0.4824 -8.5093 -0.8292 45 1 0.7343 -8.9530 -2.1017 46 1 1.5079 -2.6294 -2.1924 47 1 -0.1992 -2.8784 -1.6266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269015272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:16 Heat of formation + Delta-G solvation = -13.588968 kcal Electronic energy + Delta-G solvation = -29605.373787 eV Core-core repulsion = 25370.104650 eV Total energy + Delta-G solvation = -4235.269136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16736 -41.44625 -40.67589 -39.49827 -38.40650 -37.26009 -35.63554 -34.60092 -32.37610 -31.12619 -30.50144 -28.05773 -27.27664 -27.03813 -26.63510 -24.54267 -23.60383 -22.02579 -21.64071 -21.06602 -19.92679 -19.35935 -18.70841 -18.60828 -18.45306 -17.96019 -17.19845 -16.90592 -16.82241 -16.57932 -16.31824 -16.07728 -15.61926 -15.44177 -15.01183 -14.78470 -14.65948 -14.45569 -14.22889 -14.11199 -14.04319 -13.65851 -13.51063 -13.19745 -13.12859 -12.98415 -12.96046 -12.69989 -12.59055 -12.16972 -12.14752 -11.92194 -11.60663 -11.46644 -11.33609 -11.12362 -11.02083 -10.97148 -10.63734 -10.45820 -10.25015 -9.86412 -9.47778 -8.13581 -6.23834 1.28974 1.33567 1.50928 1.51470 1.53212 1.59131 1.65059 2.01275 2.30683 2.48702 2.73106 3.01473 3.15949 3.17966 3.26452 3.46267 3.53671 3.67872 3.87908 3.92748 3.98950 4.18566 4.30951 4.34586 4.44961 4.47103 4.49878 4.55907 4.61290 4.66909 4.71693 4.76846 4.77833 4.82679 4.87488 4.89750 4.92196 4.97618 4.97972 5.04667 5.17498 5.60025 5.64511 5.85649 5.85853 6.27734 6.54481 6.84770 6.87441 6.98363 7.08772 7.24579 7.46325 8.95809 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.001744 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.229850 B =16053.365687 C =16467.580916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.019 3.981 10 C 0.107 3.893 11 N -0.641 5.641 12 C 0.558 3.442 13 O -0.582 6.582 14 C -0.159 4.159 15 H 0.135 0.865 16 C -0.094 4.094 17 C -0.150 4.150 18 C 0.145 3.855 19 N -0.637 5.637 20 C 0.536 3.464 21 O -0.578 6.578 22 C 0.121 3.879 23 H 0.135 0.865 24 C -0.114 4.114 25 C -0.144 4.144 26 C 0.513 3.487 27 O -0.584 6.584 28 N -0.712 5.712 29 C 0.156 3.844 30 C 0.116 3.884 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.411 0.589 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -16.595 -4.277 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.084 0.916 9 C -0.001 4.001 10 C -0.015 4.015 11 N -0.374 5.374 12 C 0.349 3.651 13 O -0.464 6.464 14 C -0.181 4.181 15 H 0.153 0.847 16 C -0.131 4.131 17 C -0.152 4.152 18 C 0.023 3.977 19 N -0.371 5.371 20 C 0.325 3.675 21 O -0.458 6.458 22 C 0.013 3.987 23 H 0.152 0.848 24 C -0.152 4.152 25 C -0.183 4.183 26 C 0.301 3.699 27 O -0.464 6.464 28 N -0.365 5.365 29 C 0.035 3.965 30 C -0.007 4.007 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.150 0.850 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.250 0.750 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.490 -18.117 -4.572 18.691 hybrid contribution -0.058 1.380 -0.471 1.459 sum -0.549 -16.737 -5.043 17.489 Atomic orbital electron populations 1.70037 1.07308 1.27803 1.50398 1.25709 0.95524 1.02359 0.94182 0.85669 0.78358 0.78996 0.78977 1.19269 1.21524 1.19830 1.21193 0.93320 0.90601 1.51422 0.91609 1.20287 0.94700 0.91716 0.93349 1.23182 0.94396 0.91938 0.91980 1.49911 1.42206 1.05232 1.40029 1.19634 0.82410 0.80239 0.82782 1.90594 1.59045 1.41119 1.55596 1.21950 1.00917 0.97239 0.97992 0.84716 1.22909 1.00503 0.97550 0.92157 1.22000 0.98355 0.91011 1.03834 1.22498 0.93567 0.78135 1.03536 1.49546 1.28667 1.05709 1.53190 1.20612 0.86035 0.81902 0.78913 1.90742 1.30457 1.82806 1.41754 1.21743 0.99949 0.84408 0.92648 0.84779 1.22694 1.04860 0.94535 0.93069 1.22424 1.07321 0.97200 0.91391 1.21597 0.73676 0.82955 0.91635 1.90740 1.52322 1.26088 1.77232 1.46123 1.72779 1.06753 1.10884 1.22491 0.92011 0.86005 0.96038 1.23344 0.99923 0.77038 1.00375 0.92737 0.94295 0.92423 0.89936 0.87601 0.85024 0.89616 0.87888 0.84711 0.90138 0.86570 0.84511 0.75013 0.88073 0.88541 0.90216 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.90 13.26 21.45 0.28 -47.61 16 2 C 0.02 1.11 5.46 84.65 0.46 1.58 16 3 Si 0.95 38.95 29.54 68.60 2.03 40.98 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.53 -25.14 8.83 25.60 0.23 -24.91 16 8 H 0.07 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.02 0.82 3.79 -11.12 -0.04 0.77 16 10 C 0.11 3.99 8.17 83.17 0.68 4.67 16 11 N -0.64 -22.24 3.69 -857.93 -3.16 -25.41 16 12 C 0.56 17.21 7.86 87.66 0.69 17.89 16 13 O -0.58 -19.85 16.08 -3.04 -0.05 -19.90 16 14 C -0.16 -3.48 6.02 -11.77 -0.07 -3.55 16 15 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 16 C -0.09 -1.54 10.24 30.37 0.31 -1.23 16 17 C -0.15 -2.59 3.15 -52.99 -0.17 -2.76 16 18 C 0.14 2.35 8.63 83.65 0.72 3.08 16 19 N -0.64 -10.70 3.69 -854.85 -3.16 -13.86 16 20 C 0.54 10.38 7.26 87.66 0.64 11.01 16 21 O -0.58 -16.35 17.35 -3.04 -0.05 -16.40 16 22 C 0.12 1.55 3.75 44.70 0.17 1.72 16 23 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 24 C -0.11 -0.96 6.67 31.65 0.21 -0.75 16 25 C -0.14 -1.42 6.86 30.58 0.21 -1.21 16 26 C 0.51 10.24 8.43 87.90 0.74 10.98 16 27 O -0.58 -17.25 18.03 -3.04 -0.05 -17.31 16 28 N -0.71 -12.45 5.47 -442.98 -2.42 -14.87 16 29 C 0.16 2.44 6.94 83.69 0.58 3.02 16 30 C 0.12 4.29 8.00 83.26 0.67 4.96 16 31 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 32 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 0.86 7.90 -2.39 -0.02 0.84 16 41 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.41 7.60 8.96 -92.71 -0.83 6.77 16 44 H 0.10 1.65 8.12 -2.39 -0.02 1.63 16 45 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 46 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 47 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -69.98 401.60 -0.40 -70.38 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.17 Total: 18.73 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 6.02 Total: 25.27 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -8.46 Total: -101.75 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -0.16 Total: -53.61 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -69.98 -0.40 -70.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269015272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.790 kcal (2) G-P(sol) polarization free energy of solvation -69.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds