Wall clock time and date at job start Wed Apr 1 2020 04:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00051 * 2 1 4 4 H 1.48496 * 109.46751 * 270.00189 * 3 2 1 5 5 H 1.48496 * 109.46809 * 30.00011 * 3 2 1 6 6 H 1.48495 * 109.47005 * 150.00074 * 3 2 1 7 7 C 1.38947 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99723 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99948 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99872 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47390 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00058 * 179.97438 * 13 12 10 15 15 C 1.53012 * 109.47003 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.46841 * 294.99686 * 15 14 13 17 17 N 1.46495 * 109.46732 * 54.99808 * 15 14 13 18 18 C 1.34777 * 119.99663 * 204.99719 * 17 15 14 19 19 O 1.21783 * 120.00075 * 0.02562 * 18 17 15 20 20 C 1.41555 * 120.00143 * 180.27844 * 18 17 15 21 21 C 1.35622 * 120.00180 * 179.72945 * 20 18 17 22 22 C 1.41613 * 120.00108 * 180.02562 * 21 20 18 23 23 C 1.37947 * 126.10194 * 179.71439 * 22 21 20 24 24 C 1.40317 * 106.52781 * 179.85199 * 23 22 21 25 25 C 1.35163 * 107.20075 * 0.40859 * 24 23 22 26 26 O 1.34019 * 109.03387 * 359.74144 * 25 24 23 27 27 C 1.52998 * 109.46968 * 174.99747 * 15 14 13 28 28 C 1.53003 * 117.49990 * 248.74537 * 27 15 14 29 29 C 1.53003 * 117.49521 * 180.08524 * 27 15 14 30 30 H 0.97003 * 119.99826 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00290 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47621 * 59.99002 * 12 10 9 33 33 H 1.09006 * 109.46758 * 299.99684 * 12 10 9 34 34 H 1.00906 * 110.99680 * 303.95059 * 13 12 10 35 35 H 1.09004 * 109.47446 * 60.00016 * 14 13 12 36 36 H 1.08997 * 109.47540 * 299.99360 * 14 13 12 37 37 H 0.97000 * 120.00601 * 25.00449 * 17 15 14 38 38 H 1.08001 * 119.99553 * 359.72277 * 20 18 17 39 39 H 1.08001 * 120.00267 * 359.97438 * 21 20 18 40 40 H 1.08000 * 126.73821 * 359.96434 * 23 22 21 41 41 H 1.08001 * 126.39960 * 180.15395 * 24 23 22 42 42 H 1.08003 * 125.48102 * 179.72403 * 25 24 23 43 43 H 1.09007 * 115.55233 * 34.41978 * 27 15 14 44 44 H 1.08993 * 117.49440 * 0.02562 * 28 27 15 45 45 H 1.08997 * 117.49768 * 145.02363 * 28 27 15 46 46 H 1.09006 * 117.49911 * 214.97852 * 29 27 15 47 47 H 1.08999 * 117.50142 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4979 -7.2708 0.0039 15 6 2.5229 -8.4069 0.0037 16 1 3.0880 -8.3862 -0.9281 17 7 3.4390 -8.2381 1.1343 18 6 4.6779 -8.7661 1.0824 19 8 5.0360 -9.3832 0.0954 20 6 5.5612 -8.6081 2.1772 21 6 6.8059 -9.1442 2.1272 22 6 7.6894 -8.9866 3.2227 23 6 8.9743 -9.4812 3.3084 24 6 9.4722 -9.0844 4.5588 25 6 8.4922 -8.3879 5.1765 26 8 7.4224 -8.3308 4.3713 27 6 1.7976 -9.7480 0.1307 28 6 1.9775 -10.5278 1.4348 29 6 2.6546 -11.0153 0.1514 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6173 -4.9213 -0.8879 33 1 0.6168 -4.9200 0.8920 34 1 2.8331 -5.9128 -0.7788 35 1 0.8727 -7.3459 -0.8859 36 1 0.8734 -7.3446 0.8941 37 1 3.1540 -7.7464 1.9204 38 1 5.2438 -8.0606 3.0523 39 1 7.1232 -9.6920 1.2521 40 1 9.4955 -10.0587 2.5593 41 1 10.4535 -9.2992 4.9554 42 1 8.5603 -7.9484 6.1607 43 1 0.8260 -9.8055 -0.3601 44 1 2.6122 -10.0850 2.2023 45 1 1.1245 -11.0984 1.8017 46 1 2.2466 -11.9067 -0.3254 47 1 3.7350 -10.8937 0.0741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269038487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:20 Heat of formation + Delta-G solvation = -5.847047 kcal Electronic energy + Delta-G solvation = -29216.474240 eV Core-core repulsion = 24981.540818 eV Total energy + Delta-G solvation = -4234.933422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.81841 -40.39758 -38.32847 -37.58931 -35.50311 -34.30489 -33.95549 -33.46711 -33.29608 -31.23817 -30.07734 -28.81359 -26.37454 -24.53660 -24.01054 -22.60227 -22.19503 -22.04701 -21.19061 -20.06376 -19.67313 -19.20820 -17.90907 -17.85571 -17.08318 -16.65101 -16.40395 -16.29905 -15.79160 -15.24849 -14.94546 -14.80135 -14.52338 -14.26778 -14.09346 -13.72855 -13.38065 -13.33897 -13.28370 -13.09552 -12.92030 -12.67207 -12.31489 -12.10210 -11.85761 -11.66755 -11.53527 -11.50414 -11.42041 -11.04249 -10.83820 -10.47225 -10.39734 -10.22577 -10.19912 -10.05671 -9.88763 -9.51403 -8.95813 -8.48264 -8.21425 -8.10169 -7.96605 -6.42308 -3.83064 0.23338 1.86387 2.44220 2.67108 3.17528 3.23365 3.26186 3.32289 3.39844 3.74863 3.90287 4.05306 4.26021 4.46331 4.61910 4.66540 4.75767 4.84005 4.91066 4.93214 5.05852 5.09762 5.21434 5.24386 5.25645 5.35804 5.44498 5.46183 5.58073 5.62185 5.72743 5.77721 5.79538 5.84574 5.89603 5.95441 6.00620 6.06991 6.17445 6.24800 6.27293 6.53491 6.76914 7.14406 7.54762 7.57307 7.60605 8.05777 8.25846 8.60735 9.17508 9.53749 10.05270 10.75426 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.002354 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.707067 B =11890.500634 C =14796.765985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.051 3.949 15 C 0.180 3.820 16 H 0.091 0.909 17 N -0.698 5.698 18 C 0.552 3.448 19 O -0.551 6.551 20 C -0.197 4.197 21 C 0.003 3.997 22 C -0.006 4.006 23 C -0.168 4.168 24 C -0.220 4.220 25 C -0.020 4.020 26 O -0.164 6.164 27 C -0.167 4.167 28 C -0.176 4.176 29 C -0.184 4.184 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.351 0.649 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.206 0.794 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -22.267 7.588 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.079 4.079 15 C 0.074 3.926 16 H 0.109 0.891 17 N -0.348 5.348 18 C 0.343 3.657 19 O -0.433 6.433 20 C -0.218 4.218 21 C -0.017 4.017 22 C -0.055 4.055 23 C -0.187 4.187 24 C -0.239 4.239 25 C -0.089 4.089 26 O -0.059 6.059 27 C -0.187 4.187 28 C -0.213 4.213 29 C -0.221 4.221 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.243 0.757 38 H 0.148 0.852 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.223 0.777 43 H 0.127 0.873 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.397 -22.343 7.624 25.057 hybrid contribution -0.660 1.137 -0.408 1.376 sum 7.738 -21.206 7.217 23.699 Atomic orbital electron populations 1.69613 1.05929 1.28145 1.50669 1.25261 0.95640 0.99725 0.97345 0.85858 0.79259 0.80805 0.78386 1.20425 1.20919 1.19395 1.19699 0.93358 0.82237 1.47532 0.87951 1.41866 1.09185 1.04613 1.64424 1.19809 0.88399 0.84720 0.84510 1.90535 1.13734 1.87040 1.55280 1.21672 0.94305 0.90954 1.01230 1.60042 1.18669 0.99634 1.51589 1.22238 0.95221 0.88809 1.01596 1.20422 0.89755 0.91647 0.90766 0.89106 1.45749 1.13290 1.55220 1.20510 1.16910 0.82083 0.79276 0.87477 1.90757 1.76364 1.42153 1.33989 1.22134 0.95503 1.03978 1.00203 1.20635 0.91437 0.95605 0.93982 1.19921 0.96154 1.01657 0.87787 1.22361 0.94117 1.03354 0.98847 1.21791 1.01458 1.04467 0.96182 1.24343 0.85065 1.02591 0.96950 1.84125 1.38502 1.59134 1.24127 1.22685 1.00804 0.92562 1.02657 1.22916 1.03147 1.03700 0.91550 1.23354 1.01422 0.96654 1.00633 0.91885 0.77479 0.93834 0.89587 0.82952 0.93865 0.90309 0.75679 0.85152 0.82286 0.82658 0.82973 0.77720 0.87313 0.88802 0.89375 0.89598 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 10 C 0.44 10.28 7.82 -10.98 -0.09 10.20 16 11 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.83 16 13 N -0.67 -10.19 5.85 -115.06 -0.67 -10.86 16 14 C 0.05 0.58 5.23 -3.82 -0.02 0.56 16 15 C 0.18 2.03 2.67 -67.93 -0.18 1.85 16 16 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 17 N -0.70 -8.03 3.33 -56.71 -0.19 -8.22 16 18 C 0.55 7.05 6.39 -15.00 -0.10 6.95 16 19 O -0.55 -8.33 13.14 5.11 0.07 -8.26 16 20 C -0.20 -2.23 9.41 -39.25 -0.37 -2.60 16 21 C 0.00 0.03 9.39 -39.23 -0.37 -0.33 16 22 C -0.01 -0.06 6.84 -38.40 -0.26 -0.32 16 23 C -0.17 -1.47 10.90 -38.91 -0.42 -1.89 16 24 C -0.22 -1.68 10.87 -39.89 -0.43 -2.11 16 25 C -0.02 -0.16 12.06 29.64 0.36 0.20 16 26 O -0.16 -1.72 10.18 4.71 0.05 -1.67 16 27 C -0.17 -1.67 5.71 -90.62 -0.52 -2.19 16 28 C -0.18 -1.69 9.74 -26.69 -0.26 -1.95 16 29 C -0.18 -1.97 9.82 -26.69 -0.26 -2.23 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.35 5.89 8.43 -39.29 -0.33 5.55 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.41 4.38 8.56 -40.82 -0.35 4.03 16 38 H 0.13 1.35 7.72 -52.49 -0.41 0.95 16 39 H 0.16 1.57 7.46 -52.49 -0.39 1.18 16 40 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.21 0.80 8.06 -52.48 -0.42 0.37 16 43 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 44 H 0.09 0.93 6.67 -51.93 -0.35 0.59 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.12 1.53 5.01 -51.93 -0.26 1.27 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -33.46 401.60 -8.70 -42.15 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -6.54 Total: 19.50 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.19 Total: -1.02 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.20 Total: -57.15 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.20 Total: -25.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.46 -8.70 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269038487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.303 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds