Wall clock time and date at job start Wed Apr 1 2020 04:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00051 * 2 1 4 4 H 1.48496 * 109.46751 * 270.00189 * 3 2 1 5 5 H 1.48496 * 109.46809 * 30.00011 * 3 2 1 6 6 H 1.48495 * 109.47005 * 150.00074 * 3 2 1 7 7 C 1.38947 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99723 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99948 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99872 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47390 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00058 * 179.97438 * 13 12 10 15 15 C 1.53012 * 109.47003 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.46841 * 294.99686 * 15 14 13 17 17 N 1.46495 * 109.46732 * 54.99808 * 15 14 13 18 18 C 1.34777 * 119.99663 * 204.99719 * 17 15 14 19 19 O 1.21783 * 120.00075 * 0.02562 * 18 17 15 20 20 C 1.41555 * 120.00143 * 180.27844 * 18 17 15 21 21 C 1.35622 * 120.00180 * 179.72945 * 20 18 17 22 22 C 1.41613 * 120.00108 * 180.02562 * 21 20 18 23 23 C 1.37947 * 126.10194 * 179.71439 * 22 21 20 24 24 C 1.40317 * 106.52781 * 179.85199 * 23 22 21 25 25 C 1.35163 * 107.20075 * 0.40859 * 24 23 22 26 26 O 1.34019 * 109.03387 * 359.74144 * 25 24 23 27 27 C 1.52998 * 109.46968 * 174.99747 * 15 14 13 28 28 C 1.53003 * 117.49990 * 248.74537 * 27 15 14 29 29 C 1.53003 * 117.49521 * 180.08524 * 27 15 14 30 30 H 0.97003 * 119.99826 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00290 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47621 * 59.99002 * 12 10 9 33 33 H 1.09006 * 109.46758 * 299.99684 * 12 10 9 34 34 H 1.00906 * 110.99680 * 303.95059 * 13 12 10 35 35 H 1.09004 * 109.47446 * 60.00016 * 14 13 12 36 36 H 1.08997 * 109.47540 * 299.99360 * 14 13 12 37 37 H 0.97000 * 120.00601 * 25.00449 * 17 15 14 38 38 H 1.08001 * 119.99553 * 359.72277 * 20 18 17 39 39 H 1.08001 * 120.00267 * 359.97438 * 21 20 18 40 40 H 1.08000 * 126.73821 * 359.96434 * 23 22 21 41 41 H 1.08001 * 126.39960 * 180.15395 * 24 23 22 42 42 H 1.08003 * 125.48102 * 179.72403 * 25 24 23 43 43 H 1.09007 * 115.55233 * 34.41978 * 27 15 14 44 44 H 1.08993 * 117.49440 * 0.02562 * 28 27 15 45 45 H 1.08997 * 117.49768 * 145.02363 * 28 27 15 46 46 H 1.09006 * 117.49911 * 214.97852 * 29 27 15 47 47 H 1.08999 * 117.50142 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4979 -7.2708 0.0039 15 6 2.5229 -8.4069 0.0037 16 1 3.0880 -8.3862 -0.9281 17 7 3.4390 -8.2381 1.1343 18 6 4.6779 -8.7661 1.0824 19 8 5.0360 -9.3832 0.0954 20 6 5.5612 -8.6081 2.1772 21 6 6.8059 -9.1442 2.1272 22 6 7.6894 -8.9866 3.2227 23 6 8.9743 -9.4812 3.3084 24 6 9.4722 -9.0844 4.5588 25 6 8.4922 -8.3879 5.1765 26 8 7.4224 -8.3308 4.3713 27 6 1.7976 -9.7480 0.1307 28 6 1.9775 -10.5278 1.4348 29 6 2.6546 -11.0153 0.1514 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6173 -4.9213 -0.8879 33 1 0.6168 -4.9200 0.8920 34 1 2.8331 -5.9128 -0.7788 35 1 0.8727 -7.3459 -0.8859 36 1 0.8734 -7.3446 0.8941 37 1 3.1540 -7.7464 1.9204 38 1 5.2438 -8.0606 3.0523 39 1 7.1232 -9.6920 1.2521 40 1 9.4955 -10.0587 2.5593 41 1 10.4535 -9.2992 4.9554 42 1 8.5603 -7.9484 6.1607 43 1 0.8260 -9.8055 -0.3601 44 1 2.6122 -10.0850 2.2023 45 1 1.1245 -11.0984 1.8017 46 1 2.2466 -11.9067 -0.3254 47 1 3.7350 -10.8937 0.0741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269038487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:19 Heat of formation + Delta-G solvation = -29.280784 kcal Electronic energy + Delta-G solvation = -29217.490403 eV Core-core repulsion = 24981.540818 eV Total energy + Delta-G solvation = -4235.949585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.50079 -41.34581 -40.12498 -38.56783 -36.69574 -35.84627 -35.13366 -34.55612 -33.98117 -33.25750 -31.10590 -29.67503 -27.90239 -25.95068 -25.11472 -23.50651 -22.98477 -22.85284 -21.98249 -21.21455 -20.77876 -20.46595 -19.89540 -18.65186 -18.10165 -17.72227 -17.39997 -17.19481 -17.04800 -16.53679 -16.37580 -15.95752 -15.70971 -15.65504 -15.20363 -15.02975 -14.81366 -14.57645 -14.05877 -13.92014 -13.74092 -13.63476 -13.52911 -13.38351 -13.10681 -13.03532 -12.76312 -12.72465 -12.54229 -12.41866 -12.28150 -12.12691 -11.65121 -11.50839 -11.30585 -10.96185 -10.85013 -10.80448 -10.34443 -10.01189 -9.90526 -9.33999 -8.94401 -8.46867 -5.95319 -0.56712 1.17181 1.37476 1.41285 1.53936 1.72232 2.03469 2.06383 2.28426 2.33748 2.48771 2.82194 3.03088 3.20646 3.49961 3.74905 3.81599 3.97836 4.02177 4.06722 4.10417 4.15520 4.26479 4.29243 4.35396 4.40656 4.48379 4.57787 4.65429 4.68465 4.72754 4.85904 4.87232 4.95355 5.03945 5.06352 5.10354 5.22684 5.28079 5.40723 5.41726 5.54419 5.61377 5.87126 6.09006 6.09308 6.32404 6.60617 6.64667 7.13099 7.31288 7.57064 8.12887 8.70462 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.002354 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.707067 B =11890.500634 C =14796.765985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.067 3.933 13 N -0.678 5.678 14 C 0.059 3.941 15 C 0.182 3.818 16 H 0.067 0.933 17 N -0.694 5.694 18 C 0.550 3.450 19 O -0.582 6.582 20 C -0.222 4.222 21 C 0.019 3.981 22 C -0.044 4.044 23 C -0.159 4.159 24 C -0.230 4.230 25 C -0.015 4.015 26 O -0.184 6.184 27 C -0.162 4.162 28 C -0.166 4.166 29 C -0.196 4.196 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.340 0.660 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.412 0.588 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.179 0.821 42 H 0.241 0.759 43 H 0.129 0.871 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -22.700 8.719 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.094 0.906 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.065 4.065 13 N -0.310 5.310 14 C -0.070 4.070 15 C 0.076 3.924 16 H 0.086 0.914 17 N -0.343 5.343 18 C 0.342 3.658 19 O -0.466 6.466 20 C -0.243 4.243 21 C -0.001 4.001 22 C -0.093 4.093 23 C -0.179 4.179 24 C -0.248 4.248 25 C -0.084 4.084 26 O -0.080 6.080 27 C -0.181 4.181 28 C -0.203 4.203 29 C -0.233 4.233 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.248 0.752 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.191 0.809 41 H 0.197 0.803 42 H 0.257 0.743 43 H 0.147 0.853 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.874 -22.789 8.766 25.655 hybrid contribution -0.363 1.196 -0.682 1.424 sum 7.512 -21.593 8.084 24.249 Atomic orbital electron populations 1.69667 1.06745 1.29265 1.50378 1.26014 0.96555 1.02338 0.96344 0.84954 0.77908 0.77023 0.78622 1.19703 1.19433 1.19877 1.19633 0.92611 0.84125 1.49894 0.90551 1.41932 1.09338 1.04694 1.65148 1.20957 0.88260 0.86277 0.82073 1.90507 1.16004 1.87987 1.56578 1.21534 0.93860 0.87760 1.03389 1.60036 1.18863 1.00799 1.51321 1.22283 0.95031 0.86447 1.03238 1.20381 0.89542 0.92724 0.89717 0.91449 1.45731 1.13051 1.54848 1.20652 1.17116 0.82487 0.78811 0.87385 1.90736 1.76985 1.43738 1.35184 1.22059 0.95924 1.06018 1.00274 1.20718 0.91189 0.94154 0.94070 1.20007 0.97075 1.03920 0.88296 1.22779 0.93429 1.02009 0.99647 1.22192 1.02665 1.04323 0.95668 1.25210 0.84156 1.01353 0.97658 1.84115 1.39832 1.59548 1.24508 1.22680 1.01095 0.91215 1.03141 1.22952 1.03216 1.03180 0.90972 1.23291 1.00252 0.97648 1.02124 0.91302 0.76914 0.91468 0.87231 0.84228 0.92022 0.88535 0.75211 0.84694 0.82230 0.80919 0.80350 0.74255 0.85305 0.89439 0.87596 0.88425 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -29.25 5.29 -306.98 -1.62 -30.87 16 10 C 0.44 20.54 7.82 87.66 0.69 21.23 16 11 O -0.62 -34.75 15.78 -3.07 -0.05 -34.80 16 12 C 0.07 2.16 6.17 85.56 0.53 2.69 16 13 N -0.68 -20.13 5.85 -517.93 -3.03 -23.16 16 14 C 0.06 1.22 5.23 86.31 0.45 1.67 16 15 C 0.18 4.03 2.67 45.00 0.12 4.16 16 16 H 0.07 1.84 7.58 -2.39 -0.02 1.82 16 17 N -0.69 -16.24 3.33 -451.53 -1.50 -17.74 16 18 C 0.55 14.82 6.39 85.06 0.54 15.36 16 19 O -0.58 -18.70 13.14 -4.61 -0.06 -18.76 16 20 C -0.22 -5.33 9.41 22.48 0.21 -5.12 16 21 C 0.02 0.42 9.39 22.50 0.21 0.63 16 22 C -0.04 -0.93 6.84 23.03 0.16 -0.77 16 23 C -0.16 -2.63 10.90 22.71 0.25 -2.39 16 24 C -0.23 -3.04 10.87 22.07 0.24 -2.80 16 25 C -0.02 -0.21 12.06 67.11 0.81 0.60 16 26 O -0.18 -3.81 10.18 -6.06 -0.06 -3.87 16 27 C -0.16 -3.00 5.71 -10.79 -0.06 -3.07 16 28 C -0.17 -2.97 9.74 30.62 0.30 -2.67 16 29 C -0.20 -4.14 9.82 30.62 0.30 -3.84 16 30 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 34 H 0.34 11.47 8.43 -89.69 -0.76 10.71 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 8.86 8.56 -92.71 -0.79 8.07 16 38 H 0.14 2.99 7.72 -2.91 -0.02 2.97 16 39 H 0.16 3.40 7.46 -2.91 -0.02 3.38 16 40 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.24 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.90 8.11 -2.38 -0.02 1.88 16 44 H 0.09 1.69 6.67 -2.39 -0.02 1.67 16 45 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 47 H 0.09 2.53 5.01 -2.39 -0.01 2.52 16 Total: -1.00 -74.41 401.60 0.76 -73.65 By element: Atomic # 1 Polarization: 53.56 SS G_CDS: -1.25 Total: 52.31 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.02 Total: 7.30 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -5.87 Total: -120.96 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.17 Total: -57.43 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.41 0.76 -73.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269038487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.372 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds