Wall clock time and date at job start Wed Apr 1 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46777 * 299.99646 * 3 2 1 6 6 H 1.48497 * 109.47299 * 59.99059 * 3 2 1 7 7 C 1.37874 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53501 * 114.20699 * 179.97438 * 9 7 2 11 11 N 1.47070 * 87.98639 * 220.14639 * 10 9 7 12 12 C 1.34766 * 136.05991 * 207.08336 * 11 10 9 13 13 O 1.21278 * 120.00221 * 5.57089 * 12 11 10 14 14 C 1.50701 * 120.00283 * 185.56837 * 12 11 10 15 15 C 1.53063 * 119.24906 * 282.44111 * 14 12 11 16 16 C 1.52936 * 60.39434 * 248.80500 * 15 14 12 17 17 H 1.09003 * 119.50313 * 111.76094 * 16 15 14 18 18 C 1.54571 * 118.19900 * 266.88117 * 16 15 14 19 19 C 1.54943 * 102.85805 * 85.42947 * 18 16 15 20 20 N 1.48114 * 103.25929 * 322.56762 * 19 18 16 21 21 C 1.34780 * 127.04655 * 219.22685 * 20 19 18 22 22 O 1.21280 * 119.99946 * 176.90432 * 21 20 19 23 23 C 1.50704 * 119.99885 * 356.91661 * 21 20 19 24 24 H 1.09005 * 110.85141 * 303.78220 * 23 21 20 25 25 C 1.54479 * 110.96886 * 179.97438 * 23 21 20 26 26 N 1.46757 * 105.47301 * 216.46091 * 25 23 21 27 27 C 1.34418 * 111.29956 * 17.01981 * 26 25 23 28 28 O 1.21292 * 124.93915 * 179.59425 * 27 26 25 29 29 C 1.51275 * 110.12031 * 359.58951 * 27 26 25 30 30 C 1.47072 * 87.88476 * 27.34224 * 11 10 9 31 31 H 0.97000 * 120.00416 * 0.02562 * 1 2 3 32 32 H 1.09004 * 113.28346 * 313.06116 * 9 7 2 33 33 H 1.08993 * 113.46823 * 105.36669 * 10 9 7 34 34 H 1.09003 * 113.46561 * 334.92709 * 10 9 7 35 35 H 1.08997 * 117.45529 * 141.20769 * 15 14 12 36 36 H 1.09001 * 117.45238 * 356.40773 * 15 14 12 37 37 H 1.08996 * 110.73628 * 203.76537 * 18 16 15 38 38 H 1.08999 * 110.73960 * 327.08857 * 18 16 15 39 39 H 1.09003 * 110.66296 * 81.01345 * 19 18 16 40 40 H 1.09010 * 110.66084 * 204.12549 * 19 18 16 41 41 H 1.09003 * 110.24702 * 335.46411 * 25 23 21 42 42 H 1.09000 * 110.24546 * 97.37131 * 25 23 21 43 43 H 0.97003 * 124.35114 * 196.99634 * 26 25 23 44 44 H 1.09001 * 110.48823 * 225.07936 * 29 27 26 45 45 H 1.08995 * 110.48957 * 102.42487 * 29 27 26 46 46 H 1.08998 * 113.47044 * 87.43670 * 30 11 10 47 47 H 1.09003 * 113.46890 * 217.88072 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1488 -3.7442 0.0005 11 7 1.2073 -4.3594 -0.9471 12 6 0.8319 -5.6139 -1.2658 13 8 1.2516 -6.5539 -0.6246 14 6 -0.1095 -5.8488 -2.4189 15 6 -1.6050 -5.5835 -2.2294 16 6 -1.1090 -7.0192 -2.4076 17 1 -1.1680 -7.7153 -1.5709 18 6 -1.0920 -7.6143 -3.8341 19 6 0.2717 -7.1345 -4.3916 20 7 0.4064 -5.7698 -3.8318 21 6 0.9023 -4.6821 -4.4543 22 8 0.9017 -3.6080 -3.8911 23 6 1.4574 -4.8005 -5.8504 24 1 2.2465 -5.5515 -5.8918 25 6 1.9667 -3.4342 -6.3606 26 7 1.6398 -3.4039 -7.7910 27 6 0.7224 -4.3357 -8.1021 28 8 0.2701 -4.5218 -9.2120 29 6 0.3362 -5.1186 -6.8667 30 6 0.8604 -3.0034 -1.3986 31 1 -0.4851 0.8400 -0.0004 32 1 0.4433 -2.5303 0.7318 33 1 2.1878 -4.2513 0.9646 34 1 3.1373 -3.5666 -0.4232 35 1 -2.1446 -5.1314 -3.0615 36 1 -1.9409 -5.2876 -1.2355 37 1 -1.1328 -8.7029 -3.7986 38 1 -1.9138 -7.2153 -4.4286 39 1 1.0789 -7.7763 -4.0386 40 1 0.2523 -7.1031 -5.4811 41 1 1.4571 -2.6234 -5.8399 42 1 3.0443 -3.3557 -6.2168 43 1 2.0348 -2.7900 -8.4298 44 1 0.3103 -6.1864 -7.0842 45 1 -0.6287 -4.7819 -6.4878 46 1 1.5092 -2.6304 -2.1911 47 1 -0.1983 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269049247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:40 Heat of formation + Delta-G solvation = -12.087581 kcal Electronic energy + Delta-G solvation = -31968.724243 eV Core-core repulsion = 27733.520211 eV Total energy + Delta-G solvation = -4235.204031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20372 -40.30567 -38.92641 -38.27442 -36.74453 -36.29369 -33.60837 -32.62960 -31.55730 -30.70745 -29.04909 -27.99972 -25.58414 -24.87148 -24.48732 -23.63341 -22.63242 -21.14698 -20.89078 -20.07331 -19.30213 -18.41403 -17.67301 -17.36686 -16.74857 -16.20199 -16.12998 -15.77290 -15.49579 -15.07254 -14.79622 -14.63868 -14.39176 -14.24738 -13.93218 -13.70950 -13.60970 -13.29572 -13.26107 -12.97142 -12.73395 -12.39089 -12.14906 -12.04384 -11.84654 -11.69996 -11.35733 -11.30309 -11.18973 -10.92119 -10.79200 -10.72181 -10.49589 -10.29531 -10.24983 -9.80542 -9.64997 -9.36284 -9.17018 -9.04132 -8.62350 -8.49900 -7.78714 -6.12348 -4.16707 2.21744 2.28211 2.49368 3.05349 3.18120 3.25406 3.28094 3.34565 3.38017 3.59449 3.88177 4.02462 4.24673 4.29081 4.37273 4.52974 4.56776 4.69528 4.80067 4.90774 4.93396 5.03376 5.13213 5.16594 5.19285 5.34074 5.40891 5.42570 5.56526 5.64160 5.67749 5.73172 6.01212 6.08242 6.13899 6.24090 6.30162 6.44982 6.46307 6.69165 6.81394 6.91992 7.02532 7.35824 7.62245 7.85546 7.93176 8.09532 8.26184 8.49008 8.73778 8.85937 9.48968 10.97736 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.004112 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.383131 B = 6807.013933 C = 9080.227792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.028 3.972 10 C 0.100 3.900 11 N -0.624 5.624 12 C 0.570 3.430 13 O -0.561 6.561 14 C 0.069 3.931 15 C -0.133 4.133 16 C -0.134 4.134 17 H 0.128 0.872 18 C -0.104 4.104 19 C 0.100 3.900 20 N -0.588 5.588 21 C 0.532 3.468 22 O -0.494 6.494 23 C -0.118 4.118 24 H 0.116 0.884 25 C 0.113 3.887 26 N -0.728 5.728 27 C 0.523 3.477 28 O -0.536 6.536 29 C -0.146 4.146 30 C 0.125 3.875 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.414 0.586 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.089 0.911 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 -12.874 -12.495 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.008 3.992 10 C -0.022 4.022 11 N -0.355 5.355 12 C 0.357 3.643 13 O -0.441 6.441 14 C -0.018 4.018 15 C -0.171 4.171 16 C -0.153 4.153 17 H 0.146 0.854 18 C -0.142 4.142 19 C -0.023 4.023 20 N -0.324 5.324 21 C 0.319 3.681 22 O -0.367 6.367 23 C -0.140 4.140 24 H 0.134 0.866 25 C -0.012 4.012 26 N -0.384 5.384 27 C 0.309 3.691 28 O -0.413 6.413 29 C -0.186 4.186 30 C 0.003 3.997 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.253 0.747 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.107 0.893 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.978 -12.917 -12.471 17.981 hybrid contribution 0.708 1.120 -0.302 1.359 sum -0.271 -11.797 -12.773 17.389 Atomic orbital electron populations 1.69963 1.06041 1.26839 1.49339 1.24994 0.94815 0.99250 0.94326 0.86518 0.80193 0.83541 0.77646 1.19614 1.20930 1.20948 1.20902 0.92904 0.89566 1.51768 0.91951 1.20483 0.94602 0.90971 0.93113 1.23381 0.94231 0.93366 0.91217 1.49997 1.41153 1.05141 1.39250 1.18491 0.81128 0.81620 0.83102 1.90647 1.57578 1.41907 1.53943 1.22021 0.90006 1.07061 0.82744 1.23472 0.93203 0.96020 1.04409 1.23623 1.01055 0.91285 0.99337 0.85393 1.22377 0.96858 1.01308 0.93638 1.22819 0.97984 0.82503 0.98955 1.48931 1.63186 1.09168 1.11155 1.19859 0.77918 0.83441 0.86839 1.90896 1.54290 1.25930 1.65598 1.22208 0.99241 1.00171 0.92401 0.86631 1.22042 1.02197 0.96987 0.79974 1.46234 1.43814 1.37432 1.10886 1.20705 0.78398 0.80536 0.89477 1.90773 1.56496 1.69510 1.24499 1.22396 1.00048 1.02647 0.93542 1.23660 1.00187 0.75229 1.00601 0.92809 0.91681 0.92552 0.90896 0.87804 0.87036 0.89124 0.90121 0.90367 0.89404 0.88212 0.89264 0.74740 0.87182 0.87105 0.89336 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 13.26 55.43 0.74 -23.81 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.34 8.83 -34.44 -0.30 -13.65 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.03 0.66 3.79 -91.12 -0.35 0.32 16 10 C 0.10 2.15 8.18 -8.49 -0.07 2.08 16 11 N -0.62 -13.12 3.69 -185.02 -0.68 -13.80 16 12 C 0.57 11.25 7.86 -10.99 -0.09 11.17 16 13 O -0.56 -12.36 17.75 5.56 0.10 -12.26 16 14 C 0.07 1.05 2.39 -130.15 -0.31 0.74 16 15 C -0.13 -1.74 9.97 -26.73 -0.27 -2.01 16 16 C -0.13 -1.52 6.74 -89.35 -0.60 -2.12 16 17 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 18 C -0.10 -0.80 6.86 -24.88 -0.17 -0.97 16 19 C 0.10 0.82 6.85 -2.13 -0.01 0.81 16 20 N -0.59 -7.27 3.25 -154.05 -0.50 -7.77 16 21 C 0.53 6.91 7.16 -10.98 -0.08 6.83 16 22 O -0.49 -8.46 11.72 5.56 0.07 -8.40 16 23 C -0.12 -1.05 2.91 -90.14 -0.26 -1.31 16 24 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 25 C 0.11 1.02 7.14 -3.13 -0.02 1.00 16 26 N -0.73 -6.49 6.24 -59.21 -0.37 -6.86 16 27 C 0.52 5.66 8.43 -10.86 -0.09 5.57 16 28 O -0.54 -7.87 18.03 5.55 0.10 -7.77 16 29 C -0.15 -1.19 5.43 -26.74 -0.15 -1.34 16 30 C 0.12 2.80 5.85 -8.36 -0.05 2.75 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.48 5.24 -51.92 -0.27 0.21 16 41 H 0.10 1.12 6.96 -51.93 -0.36 0.76 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.41 3.07 8.96 -40.82 -0.37 2.71 16 44 H 0.11 0.66 6.72 -51.93 -0.35 0.31 16 45 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 46 H 0.09 2.08 6.32 -51.93 -0.33 1.75 16 47 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -34.22 384.47 -9.40 -43.61 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.70 Total: 4.30 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -2.92 Total: 11.61 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.82 Total: -52.24 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: 0.26 Total: -28.43 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.22 -9.40 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269049247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.527 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds