Wall clock time and date at job start Wed Apr 1 2020 05:15:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 120.00077 * 2 1
4 4 H 1.48497 * 109.47331 * 179.97438 * 3 2 1
5 5 H 1.48508 * 109.46777 * 299.99646 * 3 2 1
6 6 H 1.48497 * 109.47299 * 59.99059 * 3 2 1
7 7 C 1.37874 * 120.00081 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00163 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99975 * 0.02562 * 7 2 1
10 10 C 1.53501 * 114.20699 * 179.97438 * 9 7 2
11 11 N 1.47070 * 87.98639 * 220.14639 * 10 9 7
12 12 C 1.34766 * 136.05991 * 207.08336 * 11 10 9
13 13 O 1.21278 * 120.00221 * 5.57089 * 12 11 10
14 14 C 1.50701 * 120.00283 * 185.56837 * 12 11 10
15 15 C 1.53063 * 119.24906 * 282.44111 * 14 12 11
16 16 C 1.52936 * 60.39434 * 248.80500 * 15 14 12
17 17 H 1.09003 * 119.50313 * 111.76094 * 16 15 14
18 18 C 1.54571 * 118.19900 * 266.88117 * 16 15 14
19 19 C 1.54943 * 102.85805 * 85.42947 * 18 16 15
20 20 N 1.48114 * 103.25929 * 322.56762 * 19 18 16
21 21 C 1.34780 * 127.04655 * 219.22685 * 20 19 18
22 22 O 1.21280 * 119.99946 * 176.90432 * 21 20 19
23 23 C 1.50704 * 119.99885 * 356.91661 * 21 20 19
24 24 H 1.09005 * 110.85141 * 303.78220 * 23 21 20
25 25 C 1.54479 * 110.96886 * 179.97438 * 23 21 20
26 26 N 1.46757 * 105.47301 * 216.46091 * 25 23 21
27 27 C 1.34418 * 111.29956 * 17.01981 * 26 25 23
28 28 O 1.21292 * 124.93915 * 179.59425 * 27 26 25
29 29 C 1.51275 * 110.12031 * 359.58951 * 27 26 25
30 30 C 1.47072 * 87.88476 * 27.34224 * 11 10 9
31 31 H 0.97000 * 120.00416 * 0.02562 * 1 2 3
32 32 H 1.09004 * 113.28346 * 313.06116 * 9 7 2
33 33 H 1.08993 * 113.46823 * 105.36669 * 10 9 7
34 34 H 1.09003 * 113.46561 * 334.92709 * 10 9 7
35 35 H 1.08997 * 117.45529 * 141.20769 * 15 14 12
36 36 H 1.09001 * 117.45238 * 356.40773 * 15 14 12
37 37 H 1.08996 * 110.73628 * 203.76537 * 18 16 15
38 38 H 1.08999 * 110.73960 * 327.08857 * 18 16 15
39 39 H 1.09003 * 110.66296 * 81.01345 * 19 18 16
40 40 H 1.09010 * 110.66084 * 204.12549 * 19 18 16
41 41 H 1.09003 * 110.24702 * 335.46411 * 25 23 21
42 42 H 1.09000 * 110.24546 * 97.37131 * 25 23 21
43 43 H 0.97003 * 124.35114 * 196.99634 * 26 25 23
44 44 H 1.09001 * 110.48823 * 225.07936 * 29 27 26
45 45 H 1.08995 * 110.48957 * 102.42487 * 29 27 26
46 46 H 1.08998 * 113.47044 * 87.43670 * 30 11 10
47 47 H 1.09003 * 113.46890 * 217.88072 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2126
6 1 1.8903 2.3965 1.2123
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.1488 -3.7442 0.0005
11 7 1.2073 -4.3594 -0.9471
12 6 0.8319 -5.6139 -1.2658
13 8 1.2516 -6.5539 -0.6246
14 6 -0.1095 -5.8488 -2.4189
15 6 -1.6050 -5.5835 -2.2294
16 6 -1.1090 -7.0192 -2.4076
17 1 -1.1680 -7.7153 -1.5709
18 6 -1.0920 -7.6143 -3.8341
19 6 0.2717 -7.1345 -4.3916
20 7 0.4064 -5.7698 -3.8318
21 6 0.9023 -4.6821 -4.4543
22 8 0.9017 -3.6080 -3.8911
23 6 1.4574 -4.8005 -5.8504
24 1 2.2465 -5.5515 -5.8918
25 6 1.9667 -3.4342 -6.3606
26 7 1.6398 -3.4039 -7.7910
27 6 0.7224 -4.3357 -8.1021
28 8 0.2701 -4.5218 -9.2120
29 6 0.3362 -5.1186 -6.8667
30 6 0.8604 -3.0034 -1.3986
31 1 -0.4851 0.8400 -0.0004
32 1 0.4433 -2.5303 0.7318
33 1 2.1878 -4.2513 0.9646
34 1 3.1373 -3.5666 -0.4232
35 1 -2.1446 -5.1314 -3.0615
36 1 -1.9409 -5.2876 -1.2355
37 1 -1.1328 -8.7029 -3.7986
38 1 -1.9138 -7.2153 -4.4286
39 1 1.0789 -7.7763 -4.0386
40 1 0.2523 -7.1031 -5.4811
41 1 1.4571 -2.6234 -5.8399
42 1 3.0443 -3.3557 -6.2168
43 1 2.0348 -2.7900 -8.4298
44 1 0.3103 -6.1864 -7.0842
45 1 -0.6287 -4.7819 -6.4878
46 1 1.5092 -2.6304 -2.1911
47 1 -0.1983 -2.8792 -1.6264
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001269049247.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:15:39
Heat of formation + Delta-G solvation = -37.240681 kcal
Electronic energy + Delta-G solvation = -31969.814963 eV
Core-core repulsion = 27733.520211 eV
Total energy + Delta-G solvation = -4236.294752 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.16684 -41.36671 -40.36880 -39.42409 -38.31821 -37.21335 -34.65644 -34.54328
-32.32553 -31.72401 -30.63384 -28.76054 -27.36185 -26.67478 -25.57252 -24.49477
-23.81332 -22.33703 -21.68783 -21.22085 -20.56939 -19.65332 -18.73222 -18.51457
-18.35697 -17.59620 -17.24103 -17.00436 -16.61990 -16.41415 -16.06738 -16.02158
-15.66108 -15.21498 -15.07724 -14.76015 -14.62793 -14.36160 -14.18330 -14.09374
-13.91390 -13.72741 -13.58530 -13.22466 -13.04180 -12.84462 -12.76313 -12.62772
-12.57219 -12.44092 -12.18992 -12.15529 -11.75888 -11.48486 -11.30107 -11.22031
-11.06011 -10.79028 -10.71753 -10.48495 -10.16914 -9.70801 -9.55080 -8.16209
-6.26963 1.07173 1.44615 1.45573 1.46878 1.54801 1.58307 1.84534
1.94304 2.34231 2.43258 2.46547 3.08683 3.14151 3.28664 3.37923
3.44779 3.54126 3.69318 3.85915 3.89504 4.08883 4.21040 4.26570
4.33770 4.37947 4.44225 4.49231 4.50379 4.56095 4.65046 4.67920
4.71038 4.75260 4.84032 4.93380 4.98433 5.03213 5.07023 5.10785
5.19473 5.34307 5.59984 5.70692 5.81995 5.94722 6.23952 6.46111
6.80383 6.83772 7.06380 7.12783 7.16210 7.42265 8.94478
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.009129 B = 0.004112 C = 0.003083
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3066.383131 B = 6807.013933 C = 9080.227792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C 0.021 3.979
3 Si 0.959 3.041
4 H -0.262 1.262
5 H -0.281 1.281
6 H -0.281 1.281
7 C -0.525 4.525
8 H 0.066 0.934
9 C 0.016 3.984
10 C 0.106 3.894
11 N -0.629 5.629
12 C 0.566 3.434
13 O -0.587 6.587
14 C 0.033 3.967
15 C -0.137 4.137
16 C -0.103 4.103
17 H 0.127 0.873
18 C -0.095 4.095
19 C 0.094 3.906
20 N -0.583 5.583
21 C 0.526 3.474
22 O -0.546 6.546
23 C -0.104 4.104
24 H 0.146 0.854
25 C 0.114 3.886
26 N -0.719 5.719
27 C 0.519 3.481
28 O -0.579 6.579
29 C -0.135 4.135
30 C 0.155 3.845
31 H 0.263 0.737
32 H 0.035 0.965
33 H 0.059 0.941
34 H 0.082 0.918
35 H 0.114 0.886
36 H 0.093 0.907
37 H 0.121 0.879
38 H 0.098 0.902
39 H 0.081 0.919
40 H 0.124 0.876
41 H 0.075 0.925
42 H 0.106 0.894
43 H 0.419 0.581
44 H 0.143 0.857
45 H 0.110 0.890
46 H 0.080 0.920
47 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.217 -14.697 -14.396 20.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.179 4.179
3 Si 0.784 3.216
4 H -0.186 1.186
5 H -0.207 1.207
6 H -0.207 1.207
7 C -0.563 4.563
8 H 0.084 0.916
9 C -0.003 4.003
10 C -0.016 4.016
11 N -0.360 5.360
12 C 0.354 3.646
13 O -0.468 6.468
14 C -0.056 4.056
15 C -0.175 4.175
16 C -0.123 4.123
17 H 0.145 0.855
18 C -0.133 4.133
19 C -0.026 4.026
20 N -0.319 5.319
21 C 0.315 3.685
22 O -0.423 6.423
23 C -0.126 4.126
24 H 0.164 0.836
25 C -0.011 4.011
26 N -0.373 5.373
27 C 0.306 3.694
28 O -0.459 6.459
29 C -0.175 4.175
30 C 0.033 3.967
31 H 0.072 0.928
32 H 0.053 0.947
33 H 0.078 0.922
34 H 0.100 0.900
35 H 0.132 0.868
36 H 0.112 0.888
37 H 0.139 0.861
38 H 0.117 0.883
39 H 0.099 0.901
40 H 0.142 0.858
41 H 0.093 0.907
42 H 0.124 0.876
43 H 0.259 0.741
44 H 0.161 0.839
45 H 0.128 0.872
46 H 0.098 0.902
47 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -0.414 -14.779 -14.374 20.620
hybrid contribution 0.539 1.648 0.372 1.773
sum 0.125 -13.131 -14.002 19.196
Atomic orbital electron populations
1.70083 1.07542 1.27671 1.50485 1.25773 0.95550 1.02615 0.93983
0.85492 0.79295 0.79265 0.77528 1.18592 1.20698 1.20691 1.21202
0.93217 0.90484 1.51440 0.91603 1.20380 0.94521 0.91883 0.93554
1.23213 0.94296 0.92258 0.91860 1.49994 1.41330 1.05477 1.39195
1.19337 0.80986 0.80378 0.83861 1.90612 1.58766 1.42234 1.55221
1.21880 0.89668 1.11015 0.83009 1.23469 0.91856 0.98232 1.03954
1.23867 0.96424 0.90003 1.01968 0.85502 1.22517 0.97087 1.02987
0.90671 1.23154 0.98388 0.80058 1.00974 1.49111 1.62406 1.10756
1.09651 1.20576 0.77132 0.82792 0.88030 1.90870 1.56248 1.27971
1.67168 1.22172 1.00053 1.00672 0.89691 0.83598 1.22001 1.02954
0.96613 0.79542 1.46247 1.43164 1.36980 1.10931 1.21109 0.78014
0.80731 0.89552 1.90756 1.57989 1.70876 1.26272 1.22405 0.99412
1.04171 0.91542 1.23120 0.98612 0.76018 0.98938 0.92765 0.94663
0.92242 0.90034 0.86753 0.88813 0.86120 0.88347 0.90085 0.85789
0.90710 0.87563 0.74064 0.83935 0.87218 0.90166 0.94639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -52.55 13.26 21.45 0.28 -52.26 16
2 C 0.02 1.12 5.46 84.65 0.46 1.58 16
3 Si 0.96 42.19 29.54 68.60 2.03 44.22 16
4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16
5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16
6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
7 C -0.53 -27.97 8.83 25.60 0.23 -27.74 16
8 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16
9 C 0.02 0.80 3.79 -11.11 -0.04 0.76 16
10 C 0.11 4.69 8.18 83.19 0.68 5.37 16
11 N -0.63 -27.23 3.69 -857.67 -3.16 -30.39 16
12 C 0.57 22.57 7.86 87.66 0.69 23.25 16
13 O -0.59 -25.97 17.75 -3.02 -0.05 -26.03 16
14 C 0.03 0.96 2.39 2.38 0.01 0.97 16
15 C -0.14 -3.54 9.97 30.59 0.31 -3.23 16
16 C -0.10 -2.12 6.74 -9.97 -0.07 -2.19 16
17 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16
18 C -0.10 -1.02 6.86 31.79 0.22 -0.81 16
19 C 0.09 1.15 6.85 86.73 0.59 1.74 16
20 N -0.58 -13.17 3.25 -759.67 -2.47 -15.64 16
21 C 0.53 12.91 7.16 87.66 0.63 13.54 16
22 O -0.55 -18.97 11.72 -3.03 -0.04 -19.01 16
23 C -0.10 -1.56 2.91 -10.48 -0.03 -1.59 16
24 H 0.15 1.38 8.14 -2.38 -0.02 1.36 16
25 C 0.11 1.90 7.14 86.83 0.62 2.52 16
26 N -0.72 -11.69 6.24 -459.81 -2.87 -14.56 16
27 C 0.52 10.20 8.43 87.90 0.74 10.94 16
28 O -0.58 -16.25 18.03 -3.07 -0.06 -16.30 16
29 C -0.14 -1.76 5.43 30.59 0.17 -1.59 16
30 C 0.16 7.28 5.85 83.27 0.49 7.77 16
31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16
32 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16
33 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16
34 H 0.08 3.44 8.10 -2.39 -0.02 3.42 16
35 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16
36 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16
37 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16
38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
40 H 0.12 0.63 5.24 -2.38 -0.01 0.61 16
41 H 0.07 1.70 6.96 -2.39 -0.02 1.68 16
42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16
43 H 0.42 5.74 8.96 -92.71 -0.83 4.91 16
44 H 0.14 0.94 6.72 -2.39 -0.02 0.92 16
45 H 0.11 1.55 7.89 -2.39 -0.02 1.53 16
46 H 0.08 3.92 6.32 -2.39 -0.02 3.91 16
47 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16
Total: -1.00 -78.29 384.47 -0.47 -78.76
By element:
Atomic # 1 Polarization: 19.74 SS G_CDS: 0.18 Total: 19.92 kcal
Atomic # 6 Polarization: 25.61 SS G_CDS: 5.68 Total: 31.29 kcal
Atomic # 7 Polarization: -104.63 SS G_CDS: -8.22 Total: -112.85 kcal
Atomic # 8 Polarization: -61.19 SS G_CDS: -0.14 Total: -61.34 kcal
Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal
Total: -78.29 -0.47 -78.76 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269049247.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.524 kcal
(2) G-P(sol) polarization free energy of solvation -78.294 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.241 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds