Wall clock time and date at job start Wed Apr 1 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46777 * 299.99646 * 3 2 1 6 6 H 1.48497 * 109.47299 * 59.99059 * 3 2 1 7 7 C 1.37874 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53501 * 114.20699 * 179.97438 * 9 7 2 11 11 N 1.47070 * 87.98639 * 220.14639 * 10 9 7 12 12 C 1.34766 * 136.05991 * 207.08336 * 11 10 9 13 13 O 1.21278 * 120.00221 * 5.57089 * 12 11 10 14 14 C 1.50701 * 120.00283 * 185.56837 * 12 11 10 15 15 C 1.53063 * 119.24906 * 282.44111 * 14 12 11 16 16 C 1.52936 * 60.39434 * 248.80500 * 15 14 12 17 17 H 1.09003 * 119.50313 * 111.76094 * 16 15 14 18 18 C 1.54571 * 118.19900 * 266.88117 * 16 15 14 19 19 C 1.54943 * 102.85805 * 85.42947 * 18 16 15 20 20 N 1.48114 * 103.25929 * 322.56762 * 19 18 16 21 21 C 1.34780 * 127.04655 * 219.22685 * 20 19 18 22 22 O 1.21280 * 119.99946 * 176.90432 * 21 20 19 23 23 C 1.50704 * 119.99885 * 356.91661 * 21 20 19 24 24 H 1.09005 * 110.85141 * 303.78220 * 23 21 20 25 25 C 1.54479 * 110.96886 * 179.97438 * 23 21 20 26 26 N 1.46757 * 105.47301 * 216.46091 * 25 23 21 27 27 C 1.34418 * 111.29956 * 17.01981 * 26 25 23 28 28 O 1.21292 * 124.93915 * 179.59425 * 27 26 25 29 29 C 1.51275 * 110.12031 * 359.58951 * 27 26 25 30 30 C 1.47072 * 87.88476 * 27.34224 * 11 10 9 31 31 H 0.97000 * 120.00416 * 0.02562 * 1 2 3 32 32 H 1.09004 * 113.28346 * 313.06116 * 9 7 2 33 33 H 1.08993 * 113.46823 * 105.36669 * 10 9 7 34 34 H 1.09003 * 113.46561 * 334.92709 * 10 9 7 35 35 H 1.08997 * 117.45529 * 141.20769 * 15 14 12 36 36 H 1.09001 * 117.45238 * 356.40773 * 15 14 12 37 37 H 1.08996 * 110.73628 * 203.76537 * 18 16 15 38 38 H 1.08999 * 110.73960 * 327.08857 * 18 16 15 39 39 H 1.09003 * 110.66296 * 81.01345 * 19 18 16 40 40 H 1.09010 * 110.66084 * 204.12549 * 19 18 16 41 41 H 1.09003 * 110.24702 * 335.46411 * 25 23 21 42 42 H 1.09000 * 110.24546 * 97.37131 * 25 23 21 43 43 H 0.97003 * 124.35114 * 196.99634 * 26 25 23 44 44 H 1.09001 * 110.48823 * 225.07936 * 29 27 26 45 45 H 1.08995 * 110.48957 * 102.42487 * 29 27 26 46 46 H 1.08998 * 113.47044 * 87.43670 * 30 11 10 47 47 H 1.09003 * 113.46890 * 217.88072 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1488 -3.7442 0.0005 11 7 1.2073 -4.3594 -0.9471 12 6 0.8319 -5.6139 -1.2658 13 8 1.2516 -6.5539 -0.6246 14 6 -0.1095 -5.8488 -2.4189 15 6 -1.6050 -5.5835 -2.2294 16 6 -1.1090 -7.0192 -2.4076 17 1 -1.1680 -7.7153 -1.5709 18 6 -1.0920 -7.6143 -3.8341 19 6 0.2717 -7.1345 -4.3916 20 7 0.4064 -5.7698 -3.8318 21 6 0.9023 -4.6821 -4.4543 22 8 0.9017 -3.6080 -3.8911 23 6 1.4574 -4.8005 -5.8504 24 1 2.2465 -5.5515 -5.8918 25 6 1.9667 -3.4342 -6.3606 26 7 1.6398 -3.4039 -7.7910 27 6 0.7224 -4.3357 -8.1021 28 8 0.2701 -4.5218 -9.2120 29 6 0.3362 -5.1186 -6.8667 30 6 0.8604 -3.0034 -1.3986 31 1 -0.4851 0.8400 -0.0004 32 1 0.4433 -2.5303 0.7318 33 1 2.1878 -4.2513 0.9646 34 1 3.1373 -3.5666 -0.4232 35 1 -2.1446 -5.1314 -3.0615 36 1 -1.9409 -5.2876 -1.2355 37 1 -1.1328 -8.7029 -3.7986 38 1 -1.9138 -7.2153 -4.4286 39 1 1.0789 -7.7763 -4.0386 40 1 0.2523 -7.1031 -5.4811 41 1 1.4571 -2.6234 -5.8399 42 1 3.0443 -3.3557 -6.2168 43 1 2.0348 -2.7900 -8.4298 44 1 0.3103 -6.1864 -7.0842 45 1 -0.6287 -4.7819 -6.4878 46 1 1.5092 -2.6304 -2.1911 47 1 -0.1983 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269049247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:39 Heat of formation + Delta-G solvation = -37.240681 kcal Electronic energy + Delta-G solvation = -31969.814963 eV Core-core repulsion = 27733.520211 eV Total energy + Delta-G solvation = -4236.294752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16684 -41.36671 -40.36880 -39.42409 -38.31821 -37.21335 -34.65644 -34.54328 -32.32553 -31.72401 -30.63384 -28.76054 -27.36185 -26.67478 -25.57252 -24.49477 -23.81332 -22.33703 -21.68783 -21.22085 -20.56939 -19.65332 -18.73222 -18.51457 -18.35697 -17.59620 -17.24103 -17.00436 -16.61990 -16.41415 -16.06738 -16.02158 -15.66108 -15.21498 -15.07724 -14.76015 -14.62793 -14.36160 -14.18330 -14.09374 -13.91390 -13.72741 -13.58530 -13.22466 -13.04180 -12.84462 -12.76313 -12.62772 -12.57219 -12.44092 -12.18992 -12.15529 -11.75888 -11.48486 -11.30107 -11.22031 -11.06011 -10.79028 -10.71753 -10.48495 -10.16914 -9.70801 -9.55080 -8.16209 -6.26963 1.07173 1.44615 1.45573 1.46878 1.54801 1.58307 1.84534 1.94304 2.34231 2.43258 2.46547 3.08683 3.14151 3.28664 3.37923 3.44779 3.54126 3.69318 3.85915 3.89504 4.08883 4.21040 4.26570 4.33770 4.37947 4.44225 4.49231 4.50379 4.56095 4.65046 4.67920 4.71038 4.75260 4.84032 4.93380 4.98433 5.03213 5.07023 5.10785 5.19473 5.34307 5.59984 5.70692 5.81995 5.94722 6.23952 6.46111 6.80383 6.83772 7.06380 7.12783 7.16210 7.42265 8.94478 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.004112 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.383131 B = 6807.013933 C = 9080.227792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.066 0.934 9 C 0.016 3.984 10 C 0.106 3.894 11 N -0.629 5.629 12 C 0.566 3.434 13 O -0.587 6.587 14 C 0.033 3.967 15 C -0.137 4.137 16 C -0.103 4.103 17 H 0.127 0.873 18 C -0.095 4.095 19 C 0.094 3.906 20 N -0.583 5.583 21 C 0.526 3.474 22 O -0.546 6.546 23 C -0.104 4.104 24 H 0.146 0.854 25 C 0.114 3.886 26 N -0.719 5.719 27 C 0.519 3.481 28 O -0.579 6.579 29 C -0.135 4.135 30 C 0.155 3.845 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.419 0.581 44 H 0.143 0.857 45 H 0.110 0.890 46 H 0.080 0.920 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -14.697 -14.396 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.563 4.563 8 H 0.084 0.916 9 C -0.003 4.003 10 C -0.016 4.016 11 N -0.360 5.360 12 C 0.354 3.646 13 O -0.468 6.468 14 C -0.056 4.056 15 C -0.175 4.175 16 C -0.123 4.123 17 H 0.145 0.855 18 C -0.133 4.133 19 C -0.026 4.026 20 N -0.319 5.319 21 C 0.315 3.685 22 O -0.423 6.423 23 C -0.126 4.126 24 H 0.164 0.836 25 C -0.011 4.011 26 N -0.373 5.373 27 C 0.306 3.694 28 O -0.459 6.459 29 C -0.175 4.175 30 C 0.033 3.967 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.142 0.858 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.259 0.741 44 H 0.161 0.839 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.414 -14.779 -14.374 20.620 hybrid contribution 0.539 1.648 0.372 1.773 sum 0.125 -13.131 -14.002 19.196 Atomic orbital electron populations 1.70083 1.07542 1.27671 1.50485 1.25773 0.95550 1.02615 0.93983 0.85492 0.79295 0.79265 0.77528 1.18592 1.20698 1.20691 1.21202 0.93217 0.90484 1.51440 0.91603 1.20380 0.94521 0.91883 0.93554 1.23213 0.94296 0.92258 0.91860 1.49994 1.41330 1.05477 1.39195 1.19337 0.80986 0.80378 0.83861 1.90612 1.58766 1.42234 1.55221 1.21880 0.89668 1.11015 0.83009 1.23469 0.91856 0.98232 1.03954 1.23867 0.96424 0.90003 1.01968 0.85502 1.22517 0.97087 1.02987 0.90671 1.23154 0.98388 0.80058 1.00974 1.49111 1.62406 1.10756 1.09651 1.20576 0.77132 0.82792 0.88030 1.90870 1.56248 1.27971 1.67168 1.22172 1.00053 1.00672 0.89691 0.83598 1.22001 1.02954 0.96613 0.79542 1.46247 1.43164 1.36980 1.10931 1.21109 0.78014 0.80731 0.89552 1.90756 1.57989 1.70876 1.26272 1.22405 0.99412 1.04171 0.91542 1.23120 0.98612 0.76018 0.98938 0.92765 0.94663 0.92242 0.90034 0.86753 0.88813 0.86120 0.88347 0.90085 0.85789 0.90710 0.87563 0.74064 0.83935 0.87218 0.90166 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 13.26 21.45 0.28 -52.26 16 2 C 0.02 1.12 5.46 84.65 0.46 1.58 16 3 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.53 -27.97 8.83 25.60 0.23 -27.74 16 8 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.02 0.80 3.79 -11.11 -0.04 0.76 16 10 C 0.11 4.69 8.18 83.19 0.68 5.37 16 11 N -0.63 -27.23 3.69 -857.67 -3.16 -30.39 16 12 C 0.57 22.57 7.86 87.66 0.69 23.25 16 13 O -0.59 -25.97 17.75 -3.02 -0.05 -26.03 16 14 C 0.03 0.96 2.39 2.38 0.01 0.97 16 15 C -0.14 -3.54 9.97 30.59 0.31 -3.23 16 16 C -0.10 -2.12 6.74 -9.97 -0.07 -2.19 16 17 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.10 -1.02 6.86 31.79 0.22 -0.81 16 19 C 0.09 1.15 6.85 86.73 0.59 1.74 16 20 N -0.58 -13.17 3.25 -759.67 -2.47 -15.64 16 21 C 0.53 12.91 7.16 87.66 0.63 13.54 16 22 O -0.55 -18.97 11.72 -3.03 -0.04 -19.01 16 23 C -0.10 -1.56 2.91 -10.48 -0.03 -1.59 16 24 H 0.15 1.38 8.14 -2.38 -0.02 1.36 16 25 C 0.11 1.90 7.14 86.83 0.62 2.52 16 26 N -0.72 -11.69 6.24 -459.81 -2.87 -14.56 16 27 C 0.52 10.20 8.43 87.90 0.74 10.94 16 28 O -0.58 -16.25 18.03 -3.07 -0.06 -16.30 16 29 C -0.14 -1.76 5.43 30.59 0.17 -1.59 16 30 C 0.16 7.28 5.85 83.27 0.49 7.77 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 33 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 3.44 8.10 -2.39 -0.02 3.42 16 35 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 0.63 5.24 -2.38 -0.01 0.61 16 41 H 0.07 1.70 6.96 -2.39 -0.02 1.68 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.42 5.74 8.96 -92.71 -0.83 4.91 16 44 H 0.14 0.94 6.72 -2.39 -0.02 0.92 16 45 H 0.11 1.55 7.89 -2.39 -0.02 1.53 16 46 H 0.08 3.92 6.32 -2.39 -0.02 3.91 16 47 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -78.29 384.47 -0.47 -78.76 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.18 Total: 19.92 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 5.68 Total: 31.29 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -8.22 Total: -112.85 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -0.14 Total: -61.34 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -78.29 -0.47 -78.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269049247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.524 kcal (2) G-P(sol) polarization free energy of solvation -78.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds