Wall clock time and date at job start Wed Apr 1 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99651 * 2 1 4 4 H 1.48497 * 109.47170 * 269.99919 * 3 2 1 5 5 H 1.48495 * 109.47210 * 30.00564 * 3 2 1 6 6 H 1.48503 * 109.46679 * 150.00608 * 3 2 1 7 7 C 1.37878 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99854 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00147 * 179.97438 * 7 2 1 10 10 C 1.53949 * 113.74102 * 276.67178 * 9 7 2 11 11 N 1.47573 * 86.11727 * 222.04621 * 10 9 7 12 12 C 1.34780 * 134.49478 * 204.63784 * 11 10 9 13 13 O 1.21284 * 119.99915 * 179.97438 * 12 11 10 14 14 C 1.50699 * 119.99668 * 0.02562 * 12 11 10 15 15 H 1.09003 * 115.56181 * 34.36458 * 14 12 11 16 16 C 1.53148 * 117.51748 * 248.60400 * 14 12 11 17 17 C 1.52327 * 59.82256 * 252.56298 * 16 14 12 18 18 C 1.53290 * 128.81495 * 117.89368 * 17 16 14 19 19 N 1.47725 * 85.85406 * 116.62228 * 18 17 16 20 20 C 1.34774 * 134.39384 * 204.08693 * 19 18 17 21 21 O 1.21283 * 119.99853 * 179.97438 * 20 19 18 22 22 C 1.50701 * 120.00101 * 0.02562 * 20 19 18 23 23 H 1.09000 * 110.85255 * 303.78364 * 22 20 19 24 24 C 1.54482 * 110.96956 * 67.61652 * 22 20 19 25 25 N 1.46759 * 105.46881 * 143.53565 * 24 22 20 26 26 C 1.34417 * 111.30541 * 342.98336 * 25 24 22 27 27 O 1.21280 * 124.94139 * 180.37851 * 26 25 24 28 28 C 1.51276 * 110.11291 * 0.40598 * 26 25 24 29 29 C 1.47725 * 91.21160 * 24.09676 * 19 18 17 30 30 C 1.47583 * 91.01675 * 24.64206 * 11 10 9 31 31 H 0.96996 * 120.00154 * 359.97438 * 1 2 3 32 32 H 1.08999 * 113.01983 * 48.33362 * 9 7 2 33 33 H 1.09003 * 113.76687 * 336.34975 * 10 9 7 34 34 H 1.09004 * 113.76847 * 107.74113 * 10 9 7 35 35 H 1.09005 * 117.51500 * 0.02562 * 16 14 12 36 36 H 1.09003 * 117.51688 * 145.07669 * 16 14 12 37 37 H 1.08996 * 113.81161 * 230.85830 * 18 17 16 38 38 H 1.09003 * 113.81015 * 2.39277 * 18 17 16 39 39 H 1.08999 * 110.24354 * 262.53409 * 24 22 20 40 40 H 1.09001 * 110.24562 * 24.53653 * 24 22 20 41 41 H 0.97003 * 124.34625 * 162.96002 * 25 24 22 42 42 H 1.09002 * 110.48988 * 257.57353 * 28 26 25 43 43 H 1.09003 * 110.48526 * 134.93294 * 28 26 25 44 44 H 1.08997 * 113.80749 * 221.67540 * 29 19 18 45 45 H 1.08993 * 113.81402 * 90.13779 * 29 19 18 46 46 H 1.08996 * 113.77114 * 221.06092 * 30 11 10 47 47 H 1.09000 * 113.77347 * 89.66012 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1308 -1.0299 -1.4010 11 7 5.0916 -2.0712 -0.9881 12 6 6.3433 -2.4032 -1.3618 13 8 6.9069 -3.3370 -0.8315 14 6 7.0429 -1.6132 -2.4377 15 1 6.8141 -0.5478 -2.4629 16 6 7.3009 -2.3135 -3.7751 17 6 8.4546 -2.0400 -2.8188 18 6 9.3783 -3.0415 -2.1163 19 7 10.4681 -2.4199 -2.8961 20 6 11.6820 -2.8309 -3.3134 21 8 12.3862 -2.0838 -3.9591 22 6 12.1638 -4.2190 -2.9786 23 1 12.1483 -4.3858 -1.9015 24 6 11.3271 -5.2876 -3.7165 25 7 12.2751 -6.3497 -4.0728 26 6 13.5452 -5.9162 -3.9973 27 8 14.5242 -6.5876 -4.2454 28 6 13.5757 -4.4692 -3.5571 29 6 9.6965 -1.1680 -3.0358 30 6 4.1314 -2.6032 -0.0016 31 1 -0.4850 0.8400 0.0004 32 1 3.9381 -0.5272 0.7483 33 1 3.4709 -1.3378 -2.2121 34 1 4.5859 -0.0537 -1.5684 35 1 6.9642 -3.3452 -3.8765 36 1 7.2417 -1.7085 -4.6799 37 1 9.4614 -2.8841 -1.0410 38 1 9.1842 -4.0806 -2.3823 39 1 10.5512 -5.6795 -3.0588 40 1 10.8812 -4.8627 -4.6158 41 1 12.0181 -7.2492 -4.3295 42 1 13.7603 -3.8150 -4.4092 43 1 14.3346 -4.3200 -2.7891 44 1 9.7542 -0.7241 -4.0297 45 1 9.8749 -0.4495 -2.2359 46 1 4.5869 -2.8830 0.9482 47 1 3.4717 -3.3732 -0.4016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269050614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:51 Heat of formation + Delta-G solvation = 4.147627 kcal Electronic energy + Delta-G solvation = -29836.049494 eV Core-core repulsion = 25601.549474 eV Total energy + Delta-G solvation = -4234.500020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36875 -40.54207 -39.53846 -38.53277 -37.14893 -36.56861 -34.72696 -32.72944 -32.03680 -29.89810 -29.04760 -27.49935 -26.58600 -26.02010 -25.31023 -23.45621 -23.32832 -20.99249 -20.44062 -19.71572 -18.99271 -18.38003 -17.82049 -17.76389 -17.30619 -16.97154 -16.52225 -16.18247 -15.65368 -15.37610 -15.17701 -15.00979 -14.59008 -14.52034 -14.11898 -14.02443 -13.77017 -13.52168 -13.40983 -13.25098 -13.12388 -12.88471 -12.54913 -12.18970 -12.07559 -11.96638 -11.83333 -11.75114 -11.21584 -11.06185 -10.98360 -10.79601 -10.61068 -10.37225 -10.15724 -10.03813 -9.96323 -9.63169 -9.52507 -9.24374 -9.08236 -8.78127 -8.19003 -6.29297 -4.32849 2.09474 2.17621 2.27609 2.66310 2.89079 3.09189 3.13230 3.21203 3.23242 3.51188 3.70584 3.79281 3.90245 4.07863 4.21159 4.22473 4.40392 4.52076 4.58072 4.82526 4.88024 4.91735 4.95473 4.99773 5.07962 5.17197 5.24428 5.28275 5.35865 5.38786 5.45746 5.51533 5.58906 5.61423 5.70692 5.85430 5.98743 6.06319 6.18238 6.25216 6.28459 6.42100 6.51423 7.06546 7.27093 7.44449 7.68435 7.79709 8.13975 8.27536 8.44543 8.73785 9.30674 10.82697 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.001936 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.439777 B =14456.008858 C =15070.994631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.080 0.920 9 C -0.013 4.013 10 C 0.087 3.913 11 N -0.634 5.634 12 C 0.555 3.445 13 O -0.561 6.561 14 C -0.155 4.155 15 H 0.127 0.873 16 C -0.111 4.111 17 C -0.153 4.153 18 C 0.157 3.843 19 N -0.642 5.642 20 C 0.551 3.449 21 O -0.535 6.535 22 C -0.121 4.121 23 H 0.119 0.881 24 C 0.114 3.886 25 N -0.731 5.731 26 C 0.523 3.477 27 O -0.532 6.532 28 C -0.141 4.141 29 C 0.150 3.850 30 C 0.118 3.882 31 H 0.267 0.733 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.413 0.587 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.375 -5.049 -7.175 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.098 0.902 9 C -0.032 4.032 10 C -0.036 4.036 11 N -0.366 5.366 12 C 0.344 3.656 13 O -0.441 6.441 14 C -0.177 4.177 15 H 0.144 0.856 16 C -0.148 4.148 17 C -0.154 4.154 18 C 0.035 3.965 19 N -0.377 5.377 20 C 0.339 3.661 21 O -0.412 6.412 22 C -0.142 4.142 23 H 0.137 0.863 24 C -0.011 4.011 25 N -0.388 5.388 26 C 0.309 3.691 27 O -0.408 6.408 28 C -0.182 4.182 29 C 0.028 3.972 30 C -0.003 4.003 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.253 0.747 42 H 0.141 0.859 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.819 -5.372 -7.458 21.847 hybrid contribution -0.122 0.750 -0.064 0.762 sum 19.697 -4.622 -7.522 21.585 Atomic orbital electron populations 1.69884 1.06346 1.27365 1.49170 1.25011 0.94675 0.99120 0.93860 0.86900 0.80541 0.83739 0.78847 1.19902 1.21151 1.18731 1.20817 0.87595 0.94887 1.51983 0.90220 1.21076 0.97187 0.92763 0.92180 1.24037 0.87786 0.89306 1.02423 1.50291 1.11921 1.34502 1.39909 1.19141 0.80970 0.83287 0.82222 1.90621 1.66052 1.30705 1.56728 1.22146 0.97071 1.01127 0.97321 0.85550 1.22825 0.97396 1.02257 0.92344 1.22490 0.88425 1.00389 1.04114 1.22685 0.79626 0.97683 0.96512 1.49936 1.15568 1.17829 1.54355 1.19636 0.79009 0.88354 0.79101 1.90731 1.54108 1.56281 1.40086 1.22226 0.96357 0.92623 1.03036 0.86305 1.21972 0.91822 0.87343 0.99999 1.46211 1.07162 1.14860 1.70531 1.20863 0.82775 0.89437 0.76025 1.90774 1.37101 1.62326 1.50581 1.22320 0.96422 0.94799 1.04631 1.22643 0.83912 0.87798 1.02814 1.23308 0.87069 0.99281 0.90632 0.92295 0.91835 0.89356 0.92310 0.87602 0.87160 0.88129 0.89477 0.89006 0.90346 0.74730 0.85864 0.87282 0.89456 0.88808 0.91551 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 13.96 55.43 0.77 -23.88 16 2 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 18.77 27.18 -169.99 -4.62 14.15 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.26 -5.37 6.25 56.52 0.35 -5.01 16 7 C -0.52 -12.52 9.32 -34.44 -0.32 -12.84 16 8 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 9 C -0.01 -0.25 2.90 -90.84 -0.26 -0.51 16 10 C 0.09 1.48 7.47 -2.98 -0.02 1.46 16 11 N -0.63 -10.49 3.61 -178.43 -0.64 -11.14 16 12 C 0.55 8.35 7.84 -10.98 -0.09 8.27 16 13 O -0.56 -9.50 15.86 5.55 0.09 -9.41 16 14 C -0.15 -1.68 5.94 -92.04 -0.55 -2.23 16 15 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.11 -0.95 10.24 -27.00 -0.28 -1.22 16 17 C -0.15 -1.36 3.04 -155.02 -0.47 -1.83 16 18 C 0.16 1.33 6.94 -3.22 -0.02 1.31 16 19 N -0.64 -5.58 3.61 -181.76 -0.66 -6.24 16 20 C 0.55 5.26 7.28 -10.99 -0.08 5.18 16 21 O -0.54 -7.01 16.23 5.55 0.09 -6.92 16 22 C -0.12 -0.83 3.29 -90.14 -0.30 -1.12 16 23 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 24 C 0.11 0.64 6.94 -3.12 -0.02 0.62 16 25 N -0.73 -5.00 6.24 -59.21 -0.37 -5.37 16 26 C 0.52 5.12 8.43 -10.86 -0.09 5.03 16 27 O -0.53 -7.40 18.03 5.56 0.10 -7.30 16 28 C -0.14 -1.14 6.22 -26.75 -0.17 -1.31 16 29 C 0.15 1.23 8.85 -3.22 -0.03 1.21 16 30 C 0.12 2.11 8.39 -2.97 -0.02 2.08 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.06 1.30 6.57 -51.93 -0.34 0.96 16 33 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 34 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.93 8.01 -51.93 -0.42 0.52 16 38 H 0.09 0.66 7.19 -51.93 -0.37 0.29 16 39 H 0.09 0.37 7.50 -51.93 -0.39 -0.02 16 40 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 41 H 0.41 2.22 8.96 -40.82 -0.37 1.85 16 42 H 0.12 1.14 6.97 -51.93 -0.36 0.78 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -32.57 392.58 -9.04 -41.62 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.91 Total: 2.61 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -2.82 Total: 5.96 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.90 Total: -46.62 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.28 Total: -23.63 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.62 Total: 14.15 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.57 -9.04 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269050614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.764 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds