Wall clock time and date at job start Wed Apr 1 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00038 * 2 1 4 4 H 1.48494 * 109.47349 * 269.99867 * 3 2 1 5 5 H 1.48509 * 109.47062 * 29.99937 * 3 2 1 6 6 H 1.48502 * 109.47355 * 149.99466 * 3 2 1 7 7 C 1.37876 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99944 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00297 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47182 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47297 * 180.02562 * 10 9 7 12 12 C 1.46945 * 124.34993 * 90.00404 * 11 10 9 13 13 C 1.53707 * 105.31617 * 196.31298 * 12 11 10 14 14 C 1.53833 * 102.60298 * 335.41923 * 13 12 11 15 15 C 1.34759 * 124.31394 * 269.87111 * 11 10 9 16 16 O 1.21278 * 125.08509 * 359.65332 * 15 11 10 17 17 C 1.52272 * 110.81192 * 217.11977 * 13 12 11 18 18 C 1.53214 * 109.37279 * 289.05358 * 17 13 12 19 19 C 1.53039 * 109.45653 * 300.14080 * 18 17 13 20 20 C 1.53198 * 109.49821 * 61.93780 * 19 18 17 21 21 N 1.45960 * 110.80253 * 93.68915 * 13 12 11 22 22 C 1.34771 * 120.64787 * 252.19115 * 21 13 12 23 23 O 1.21608 * 119.99865 * 4.65812 * 22 21 13 24 24 C 1.47394 * 120.00282 * 184.65207 * 22 21 13 25 25 C 1.47110 * 128.56652 * 315.91099 * 24 22 21 26 26 N 1.30012 * 105.32786 * 179.86709 * 25 24 22 27 27 O 1.20659 * 112.30603 * 0.42462 * 26 25 24 28 28 C 1.33497 * 113.15209 * 359.71225 * 27 26 25 29 29 H 0.96995 * 120.00355 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47107 * 60.00702 * 9 7 2 31 31 H 1.08997 * 109.47521 * 300.00293 * 9 7 2 32 32 H 1.09003 * 109.47076 * 60.00370 * 10 9 7 33 33 H 1.09001 * 109.47573 * 300.00377 * 10 9 7 34 34 H 1.08995 * 110.27865 * 77.34823 * 12 11 10 35 35 H 1.09005 * 110.27671 * 315.27147 * 12 11 10 36 36 H 1.09003 * 110.51085 * 142.63083 * 14 13 12 37 37 H 1.08998 * 110.51404 * 265.21489 * 14 13 12 38 38 H 1.09006 * 109.48324 * 49.01859 * 17 13 12 39 39 H 1.08996 * 109.49351 * 169.07776 * 17 13 12 40 40 H 1.08998 * 109.47550 * 180.13577 * 18 17 13 41 41 H 1.09000 * 109.46927 * 60.13087 * 18 17 13 42 42 H 1.09003 * 109.46303 * 301.92803 * 19 18 17 43 43 H 1.08995 * 109.46661 * 181.95311 * 19 18 17 44 44 H 1.09001 * 109.60767 * 184.98719 * 20 19 18 45 45 H 1.08999 * 109.61216 * 64.46987 * 20 19 18 46 46 H 1.08000 * 127.33222 * 359.97438 * 25 24 22 47 47 H 1.08003 * 126.82807 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 7 5.4866 -2.6365 0.0001 12 6 6.3157 -2.6365 1.2133 13 6 7.7194 -2.2201 0.7458 14 6 7.7136 -2.6272 -0.7377 15 6 6.2463 -2.6391 -1.1129 16 8 5.8196 -2.6477 -2.2481 17 6 8.7928 -2.9822 1.5112 18 6 8.8399 -2.4787 2.9575 19 6 9.1655 -0.9833 2.9663 20 6 8.0591 -0.2148 2.2367 21 7 7.9065 -0.7794 0.8864 22 6 7.9384 0.0184 -0.1994 23 8 7.7263 -0.4473 -1.3025 24 6 8.2300 1.4554 -0.0497 25 6 7.7020 2.3995 0.9473 26 7 8.2571 3.5413 0.6672 27 8 8.9924 3.4713 -0.2869 28 6 9.0574 2.2450 -0.8105 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8746 -0.6807 -0.8904 32 1 3.6579 -3.1505 -0.8897 33 1 3.6585 -3.1502 0.8903 34 1 6.3439 -3.6341 1.6516 35 1 5.9290 -1.9169 1.9351 36 1 8.2552 -1.8952 -1.3368 37 1 8.1482 -3.6189 -0.8633 38 1 8.5579 -4.0466 1.5042 39 1 9.7612 -2.8202 1.0380 40 1 9.6095 -3.0214 3.5063 41 1 7.8719 -2.6426 3.4310 42 1 10.1173 -0.8158 2.4622 43 1 9.2332 -0.6324 3.9960 44 1 8.3317 0.8381 2.1643 45 1 7.1216 -0.3159 2.7835 46 1 7.0035 2.1885 1.7435 47 1 9.6442 1.9353 -1.6627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269643646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:56 Heat of formation + Delta-G solvation = 35.723096 kcal Electronic energy + Delta-G solvation = -32793.410822 eV Core-core repulsion = 28560.280017 eV Total energy + Delta-G solvation = -4233.130805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.19631 -41.67590 -38.93887 -37.86258 -35.59527 -34.55150 -33.64927 -33.06859 -32.40200 -32.01104 -30.20630 -28.32242 -27.07020 -25.59595 -24.64810 -24.21389 -23.28579 -21.91684 -21.19410 -20.85078 -19.55139 -18.68465 -18.15895 -17.95648 -17.35125 -16.98921 -16.60486 -16.03534 -15.56783 -15.32216 -14.91723 -14.77863 -14.58975 -14.27525 -14.09298 -13.98792 -13.66477 -13.47982 -13.14496 -13.12330 -12.91547 -12.69665 -12.60659 -12.41611 -12.05692 -11.75903 -11.60061 -11.54746 -11.34198 -11.09328 -11.03426 -10.96609 -10.54122 -10.44683 -10.12686 -10.07592 -9.83804 -9.34103 -9.20315 -9.07325 -8.86007 -8.55165 -8.05450 -6.06510 -4.04699 0.91816 1.54166 2.42402 2.50538 2.88099 3.22787 3.29528 3.36970 3.39446 3.55793 3.83915 4.13108 4.13971 4.31763 4.37529 4.43787 4.49643 4.49862 4.63176 4.74261 4.78496 5.00892 5.07076 5.16743 5.20509 5.22825 5.28166 5.42206 5.46921 5.51989 5.53603 5.57383 5.61708 5.64591 5.71230 5.87818 5.95610 6.07761 6.35708 6.54472 6.64104 6.91007 7.02313 7.22041 7.39763 7.72470 7.78482 7.86691 7.91421 8.48616 8.78914 8.97174 9.56092 11.06732 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.005224 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.712817 B = 5358.780987 C = 7023.830411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.519 4.519 8 H 0.074 0.926 9 C -0.021 4.021 10 C 0.139 3.861 11 N -0.622 5.622 12 C 0.098 3.902 13 C 0.164 3.836 14 C -0.194 4.194 15 C 0.531 3.469 16 O -0.527 6.527 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.132 4.132 20 C 0.094 3.906 21 N -0.586 5.586 22 C 0.598 3.402 23 O -0.498 6.498 24 C -0.253 4.253 25 C 0.020 3.980 26 N -0.351 5.351 27 O 0.096 5.904 28 C 0.012 3.988 29 H 0.263 0.737 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.169 0.831 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.202 0.798 47 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.323 -1.518 8.846 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.059 4.059 10 C 0.018 3.982 11 N -0.357 5.357 12 C -0.027 4.027 13 C 0.079 3.921 14 C -0.232 4.232 15 C 0.318 3.682 16 O -0.403 6.403 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.171 4.171 20 C -0.028 4.028 21 N -0.318 5.318 22 C 0.387 3.613 23 O -0.376 6.376 24 C -0.260 4.260 25 C -0.162 4.162 26 N -0.055 5.055 27 O 0.035 5.965 28 C -0.070 4.070 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.184 0.816 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.218 0.782 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 25.659 -0.422 8.179 26.934 hybrid contribution -0.047 0.123 0.117 0.176 sum 25.611 -0.299 8.296 26.923 Atomic orbital electron populations 1.69899 1.06185 1.26904 1.50977 1.24948 0.94675 0.98987 0.94433 0.86783 0.79995 0.83761 0.78701 1.20241 1.21330 1.19491 1.20977 0.88950 0.94665 1.51145 0.90775 1.19847 0.97147 0.92479 0.96438 1.21512 0.74750 0.99919 1.01970 1.48641 1.07283 1.73845 1.05912 1.22339 0.89724 1.01591 0.89086 1.20775 0.94905 0.79501 0.96969 1.23724 0.98326 1.05473 0.95718 1.20576 0.88214 0.74827 0.84550 1.90675 1.78487 1.50109 1.21043 1.21732 0.98269 0.99700 0.95395 1.21591 1.02675 0.95501 0.96274 1.21892 0.98577 0.95730 1.00854 1.22142 0.99798 0.98749 0.82104 1.47484 1.71506 1.06446 1.06352 1.17008 0.76548 0.83632 0.84155 1.90664 1.48390 1.72260 1.26255 1.22432 1.05985 0.96767 1.00854 1.26525 1.01625 0.87352 1.00734 1.73675 1.06495 1.22853 1.02523 1.84593 1.48959 1.29923 1.33030 1.26264 0.99041 0.82971 0.98709 0.92671 0.96995 0.96680 0.90614 0.91287 0.90483 0.90290 0.81552 0.89079 0.89776 0.90674 0.91077 0.91102 0.91314 0.90316 0.88999 0.90356 0.78158 0.75412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 22.89 27.47 -169.99 -4.67 18.23 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.27 -6.68 6.54 56.52 0.37 -6.32 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.88 16 9 C -0.02 -0.53 4.36 -27.89 -0.12 -0.65 16 10 C 0.14 2.96 5.88 -4.04 -0.02 2.94 16 11 N -0.62 -11.32 2.95 -172.57 -0.51 -11.83 16 12 C 0.10 1.25 5.93 -3.43 -0.02 1.23 16 13 C 0.16 1.78 0.87 -131.68 -0.11 1.67 16 14 C -0.19 -2.70 5.37 -27.08 -0.15 -2.85 16 15 C 0.53 10.39 6.84 -10.62 -0.07 10.31 16 16 O -0.53 -12.89 17.61 5.56 0.10 -12.79 16 17 C -0.11 -0.78 4.68 -26.99 -0.13 -0.90 16 18 C -0.12 -0.67 5.79 -26.60 -0.15 -0.83 16 19 C -0.13 -0.73 6.05 -26.61 -0.16 -0.89 16 20 C 0.09 0.74 5.66 -3.58 -0.02 0.72 16 21 N -0.59 -6.41 2.69 -159.35 -0.43 -6.84 16 22 C 0.60 8.06 7.51 -12.54 -0.09 7.97 16 23 O -0.50 -8.52 11.91 5.27 0.06 -8.46 16 24 C -0.25 -2.91 5.55 -102.89 -0.57 -3.48 16 25 C 0.02 0.22 10.07 -14.72 -0.15 0.08 16 26 N -0.35 -4.20 12.01 31.81 0.38 -3.82 16 27 O 0.10 0.99 11.06 18.64 0.21 1.20 16 28 C 0.01 0.11 12.35 30.41 0.38 0.48 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 31 H 0.01 0.42 7.57 -51.93 -0.39 0.02 16 32 H 0.08 1.75 7.93 -51.93 -0.41 1.33 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 35 H 0.08 1.01 7.13 -51.93 -0.37 0.64 16 36 H 0.17 2.55 4.50 -57.74 -0.26 2.29 16 37 H 0.09 1.05 7.87 -51.93 -0.41 0.64 16 38 H 0.08 0.51 7.94 -51.93 -0.41 0.09 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.40 7.65 -51.93 -0.40 0.00 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.67 4.28 -51.93 -0.22 0.45 16 45 H 0.08 0.61 7.41 -51.93 -0.39 0.23 16 46 H 0.20 1.93 7.46 -52.49 -0.39 1.54 16 47 H 0.23 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -38.91 372.19 -6.85 -45.77 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.55 Total: -1.76 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.83 Total: 2.26 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.22 Total: -50.05 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.37 Total: -20.05 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.91 -6.85 -45.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269643646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.490 kcal (2) G-P(sol) polarization free energy of solvation -38.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds