Wall clock time and date at job start Wed Apr 1 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00038 * 2 1 4 4 H 1.48494 * 109.47349 * 269.99867 * 3 2 1 5 5 H 1.48509 * 109.47062 * 29.99937 * 3 2 1 6 6 H 1.48502 * 109.47355 * 149.99466 * 3 2 1 7 7 C 1.37876 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99944 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00297 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47182 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47297 * 180.02562 * 10 9 7 12 12 C 1.46945 * 124.34993 * 90.00404 * 11 10 9 13 13 C 1.53707 * 105.31617 * 196.31298 * 12 11 10 14 14 C 1.53833 * 102.60298 * 335.41923 * 13 12 11 15 15 C 1.34759 * 124.31394 * 269.87111 * 11 10 9 16 16 O 1.21278 * 125.08509 * 359.65332 * 15 11 10 17 17 C 1.52272 * 110.81192 * 217.11977 * 13 12 11 18 18 C 1.53214 * 109.37279 * 289.05358 * 17 13 12 19 19 C 1.53039 * 109.45653 * 300.14080 * 18 17 13 20 20 C 1.53198 * 109.49821 * 61.93780 * 19 18 17 21 21 N 1.45960 * 110.80253 * 93.68915 * 13 12 11 22 22 C 1.34771 * 120.64787 * 252.19115 * 21 13 12 23 23 O 1.21608 * 119.99865 * 4.65812 * 22 21 13 24 24 C 1.47394 * 120.00282 * 184.65207 * 22 21 13 25 25 C 1.47110 * 128.56652 * 315.91099 * 24 22 21 26 26 N 1.30012 * 105.32786 * 179.86709 * 25 24 22 27 27 O 1.20659 * 112.30603 * 0.42462 * 26 25 24 28 28 C 1.33497 * 113.15209 * 359.71225 * 27 26 25 29 29 H 0.96995 * 120.00355 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47107 * 60.00702 * 9 7 2 31 31 H 1.08997 * 109.47521 * 300.00293 * 9 7 2 32 32 H 1.09003 * 109.47076 * 60.00370 * 10 9 7 33 33 H 1.09001 * 109.47573 * 300.00377 * 10 9 7 34 34 H 1.08995 * 110.27865 * 77.34823 * 12 11 10 35 35 H 1.09005 * 110.27671 * 315.27147 * 12 11 10 36 36 H 1.09003 * 110.51085 * 142.63083 * 14 13 12 37 37 H 1.08998 * 110.51404 * 265.21489 * 14 13 12 38 38 H 1.09006 * 109.48324 * 49.01859 * 17 13 12 39 39 H 1.08996 * 109.49351 * 169.07776 * 17 13 12 40 40 H 1.08998 * 109.47550 * 180.13577 * 18 17 13 41 41 H 1.09000 * 109.46927 * 60.13087 * 18 17 13 42 42 H 1.09003 * 109.46303 * 301.92803 * 19 18 17 43 43 H 1.08995 * 109.46661 * 181.95311 * 19 18 17 44 44 H 1.09001 * 109.60767 * 184.98719 * 20 19 18 45 45 H 1.08999 * 109.61216 * 64.46987 * 20 19 18 46 46 H 1.08000 * 127.33222 * 359.97438 * 25 24 22 47 47 H 1.08003 * 126.82807 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 7 5.4866 -2.6365 0.0001 12 6 6.3157 -2.6365 1.2133 13 6 7.7194 -2.2201 0.7458 14 6 7.7136 -2.6272 -0.7377 15 6 6.2463 -2.6391 -1.1129 16 8 5.8196 -2.6477 -2.2481 17 6 8.7928 -2.9822 1.5112 18 6 8.8399 -2.4787 2.9575 19 6 9.1655 -0.9833 2.9663 20 6 8.0591 -0.2148 2.2367 21 7 7.9065 -0.7794 0.8864 22 6 7.9384 0.0184 -0.1994 23 8 7.7263 -0.4473 -1.3025 24 6 8.2300 1.4554 -0.0497 25 6 7.7020 2.3995 0.9473 26 7 8.2571 3.5413 0.6672 27 8 8.9924 3.4713 -0.2869 28 6 9.0574 2.2450 -0.8105 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8746 -0.6807 -0.8904 32 1 3.6579 -3.1505 -0.8897 33 1 3.6585 -3.1502 0.8903 34 1 6.3439 -3.6341 1.6516 35 1 5.9290 -1.9169 1.9351 36 1 8.2552 -1.8952 -1.3368 37 1 8.1482 -3.6189 -0.8633 38 1 8.5579 -4.0466 1.5042 39 1 9.7612 -2.8202 1.0380 40 1 9.6095 -3.0214 3.5063 41 1 7.8719 -2.6426 3.4310 42 1 10.1173 -0.8158 2.4622 43 1 9.2332 -0.6324 3.9960 44 1 8.3317 0.8381 2.1643 45 1 7.1216 -0.3159 2.7835 46 1 7.0035 2.1885 1.7435 47 1 9.6442 1.9353 -1.6627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269643646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:55 Heat of formation + Delta-G solvation = 7.707083 kcal Electronic energy + Delta-G solvation = -32794.625687 eV Core-core repulsion = 28560.280017 eV Total energy + Delta-G solvation = -4234.345670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.01655 -42.67405 -40.23514 -38.79736 -37.04743 -35.85302 -35.04681 -33.96318 -33.79163 -32.89667 -31.78166 -29.42961 -28.16653 -26.97631 -25.74760 -25.07035 -24.13673 -23.08623 -22.51349 -21.83175 -20.74661 -19.77827 -19.10884 -18.96219 -18.78776 -18.19386 -17.75341 -17.30927 -16.81793 -16.42391 -16.26707 -16.05222 -15.62237 -15.32433 -15.08762 -14.88480 -14.86797 -14.75642 -14.58095 -14.24282 -14.12389 -14.01987 -13.79350 -13.54920 -13.20173 -13.06275 -13.01908 -12.63458 -12.40766 -12.22242 -12.10336 -11.95214 -11.86659 -11.66482 -11.58092 -11.54981 -11.27580 -10.95682 -10.89525 -10.65284 -10.12646 -9.84649 -9.51407 -8.40848 -6.44768 0.13488 0.69896 1.19193 1.24471 1.32887 1.53122 1.62928 1.80205 2.13942 2.17333 2.22903 2.93864 3.02895 3.27752 3.34388 3.42887 3.66055 3.69125 3.87203 3.98653 4.04264 4.13310 4.24272 4.26337 4.35866 4.43346 4.53019 4.54220 4.55921 4.62468 4.69085 4.70897 4.75191 4.92093 4.97604 5.06043 5.07660 5.09966 5.20723 5.25717 5.29701 5.42536 5.52068 5.63126 5.73545 6.14248 6.17114 6.29881 6.61000 6.94959 7.10095 7.19250 7.29787 8.75513 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.005224 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.712817 B = 5358.780987 C = 7023.830411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.044 0.956 9 C -0.006 4.006 10 C 0.148 3.852 11 N -0.625 5.625 12 C 0.089 3.911 13 C 0.171 3.829 14 C -0.184 4.184 15 C 0.515 3.485 16 O -0.593 6.593 17 C -0.105 4.105 18 C -0.120 4.120 19 C -0.126 4.126 20 C 0.087 3.913 21 N -0.582 5.582 22 C 0.591 3.409 23 O -0.546 6.546 24 C -0.280 4.280 25 C 0.019 3.981 26 N -0.372 5.372 27 O 0.095 5.905 28 C 0.036 3.964 29 H 0.269 0.731 30 H 0.025 0.975 31 H -0.016 1.016 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.160 0.840 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.213 0.787 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.588 -1.340 11.553 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.213 1.213 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.569 4.569 8 H 0.062 0.938 9 C -0.044 4.044 10 C 0.026 3.974 11 N -0.358 5.358 12 C -0.034 4.034 13 C 0.086 3.914 14 C -0.222 4.222 15 C 0.305 3.695 16 O -0.473 6.473 17 C -0.143 4.143 18 C -0.158 4.158 19 C -0.163 4.163 20 C -0.034 4.034 21 N -0.313 5.313 22 C 0.381 3.619 23 O -0.427 6.427 24 C -0.287 4.287 25 C -0.163 4.163 26 N -0.078 5.078 27 O 0.036 5.964 28 C -0.046 4.046 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.002 0.998 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.176 0.824 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.229 0.771 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 28.967 -0.250 10.986 30.982 hybrid contribution -1.119 0.026 -0.751 1.348 sum 27.848 -0.224 10.236 29.671 Atomic orbital electron populations 1.70017 1.07813 1.28230 1.52009 1.25804 0.95530 1.02783 0.94029 0.85805 0.79738 0.79458 0.78440 1.21263 1.19465 1.17301 1.21262 0.91065 0.93684 1.50861 0.93813 1.19650 0.94533 0.94988 0.95252 1.21127 0.77375 0.97140 1.01781 1.48707 1.06147 1.72991 1.07962 1.22790 0.89735 1.03941 0.86894 1.20906 0.95270 0.80059 0.95153 1.23631 0.93771 1.06966 0.97861 1.21638 0.90729 0.73311 0.83802 1.90620 1.80078 1.52957 1.23666 1.21757 0.96843 0.99934 0.95770 1.21616 1.03586 0.95400 0.95184 1.21873 0.97454 0.95571 1.01450 1.22407 1.01008 0.99447 0.80533 1.47663 1.70121 1.06429 1.07057 1.17320 0.76075 0.84439 0.84073 1.90666 1.50755 1.73297 1.28014 1.22395 1.07797 0.96240 1.02303 1.26752 1.01542 0.87089 1.00887 1.73671 1.07370 1.23337 1.03386 1.84578 1.48665 1.30387 1.32767 1.26905 0.97647 0.81859 0.98167 0.92198 0.95661 0.99797 0.93480 0.88856 0.86918 0.89907 0.82404 0.86291 0.88063 0.89753 0.88999 0.90894 0.91101 0.88469 0.88638 0.90142 0.77051 0.72097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 2 C 0.02 1.02 5.47 84.66 0.46 1.48 16 3 Si 0.94 47.42 27.47 68.60 1.88 49.31 16 4 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 5 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 7 C -0.53 -32.02 9.66 25.60 0.25 -31.78 16 8 H 0.04 2.83 7.99 -2.91 -0.02 2.81 16 9 C -0.01 -0.30 4.36 29.85 0.13 -0.17 16 10 C 0.15 6.41 5.88 86.38 0.51 6.92 16 11 N -0.63 -22.45 2.95 -818.29 -2.41 -24.86 16 12 C 0.09 2.03 5.93 86.53 0.51 2.54 16 13 C 0.17 3.25 0.87 3.98 0.00 3.25 16 14 C -0.18 -4.91 5.37 30.37 0.16 -4.74 16 15 C 0.51 20.46 6.84 87.90 0.60 21.06 16 16 O -0.59 -30.52 17.61 -3.02 -0.05 -30.57 16 17 C -0.10 -0.97 4.68 30.43 0.14 -0.83 16 18 C -0.12 -0.71 5.79 30.68 0.18 -0.53 16 19 C -0.13 -0.84 6.05 30.67 0.19 -0.65 16 20 C 0.09 1.09 5.66 86.32 0.49 1.58 16 21 N -0.58 -11.41 2.69 -776.34 -2.09 -13.50 16 22 C 0.59 15.34 7.51 86.65 0.65 15.99 16 23 O -0.55 -18.83 11.91 -4.06 -0.05 -18.88 16 24 C -0.28 -6.05 5.55 -18.74 -0.10 -6.15 16 25 C 0.02 0.41 10.07 87.29 0.88 1.28 16 26 N -0.37 -8.34 12.01 -54.18 -0.65 -8.99 16 27 O 0.10 1.82 11.06 76.95 0.85 2.67 16 28 C 0.04 0.58 12.35 67.61 0.83 1.41 16 29 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 30 H 0.03 1.22 7.20 -2.39 -0.02 1.21 16 31 H -0.02 -0.95 7.57 -2.39 -0.02 -0.97 16 32 H 0.05 2.28 7.93 -2.39 -0.02 2.27 16 33 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.11 1.82 7.72 -2.39 -0.02 1.80 16 35 H 0.08 1.86 7.13 -2.38 -0.02 1.84 16 36 H 0.16 4.79 4.50 -94.48 -0.42 4.37 16 37 H 0.12 2.45 7.87 -2.39 -0.02 2.43 16 38 H 0.10 0.67 7.94 -2.38 -0.02 0.65 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 42 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.10 1.14 4.28 -2.39 -0.01 1.13 16 45 H 0.08 0.99 7.41 -2.39 -0.02 0.97 16 46 H 0.21 3.68 7.46 -2.91 -0.02 3.66 16 47 H 0.26 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -90.29 372.19 4.20 -86.09 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.53 Total: 8.11 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 5.88 Total: 10.66 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.85 Total: -107.39 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: 0.75 Total: -46.78 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.88 Total: 49.31 kcal Total: -90.29 4.20 -86.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269643646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.801 kcal (2) G-P(sol) polarization free energy of solvation -90.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds