Wall clock time and date at job start Wed Apr 1 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48499 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46938 * 299.99681 * 3 2 1 6 6 H 1.48497 * 109.47504 * 59.99739 * 3 2 1 7 7 C 1.37878 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99370 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47050 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47177 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99787 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00002 * 180.02562 * 11 10 9 14 14 C 1.47645 * 125.81459 * 0.02562 * 13 11 10 15 15 C 1.54983 * 104.85557 * 155.96350 * 14 13 11 16 16 C 1.55327 * 101.66717 * 36.60343 * 15 14 13 17 17 C 1.46721 * 125.75046 * 179.97438 * 13 11 10 18 18 C 1.53893 * 111.06773 * 60.24981 * 17 13 11 19 19 C 1.54646 * 101.58865 * 215.02515 * 18 17 13 20 20 N 1.46846 * 105.50325 * 24.78631 * 19 18 17 21 21 C 1.46497 * 124.36620 * 163.14102 * 20 19 18 22 22 C 1.50704 * 109.47017 * 90.00066 * 21 20 19 23 23 C 1.41369 * 128.00746 * 269.67706 * 22 21 20 24 24 N 1.30180 * 106.39935 * 179.89475 * 23 22 21 25 25 O 1.20923 * 111.59700 * 0.39129 * 24 23 22 26 26 C 1.34034 * 111.57254 * 359.74489 * 25 24 23 27 27 C 1.34653 * 111.26200 * 343.12423 * 20 19 18 28 28 O 1.21288 * 125.07125 * 180.83924 * 27 20 19 29 29 H 0.97005 * 119.99828 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47149 * 60.00005 * 9 7 2 31 31 H 1.08996 * 109.47305 * 299.99772 * 9 7 2 32 32 H 1.08999 * 109.47026 * 60.00070 * 10 9 7 33 33 H 1.09008 * 109.47371 * 300.00212 * 10 9 7 34 34 H 1.08999 * 110.36345 * 37.12093 * 14 13 11 35 35 H 1.08995 * 110.36531 * 274.80330 * 14 13 11 36 36 H 1.09002 * 110.98574 * 278.51338 * 15 14 13 37 37 H 1.08996 * 110.99173 * 154.70052 * 15 14 13 38 38 H 1.09002 * 110.76074 * 83.41667 * 16 15 14 39 39 H 1.08997 * 110.76519 * 206.61668 * 16 15 14 40 40 H 1.08998 * 111.00450 * 333.10368 * 18 17 13 41 41 H 1.08997 * 111.00078 * 96.91584 * 18 17 13 42 42 H 1.09010 * 110.23587 * 143.78829 * 19 18 17 43 43 H 1.08996 * 110.24121 * 265.77532 * 19 18 17 44 44 H 1.09006 * 109.47193 * 210.00050 * 21 20 19 45 45 H 1.08994 * 109.47458 * 329.99703 * 21 20 19 46 46 H 1.08004 * 126.80464 * 0.02999 * 23 22 21 47 47 H 1.08002 * 126.78391 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0003 14 6 3.6343 -6.2840 0.0019 15 6 3.8903 -7.6855 0.6120 16 6 2.7023 -8.5018 0.0332 17 6 1.5629 -7.4721 0.0003 18 6 0.6864 -7.6840 -1.2467 19 6 -0.4528 -8.5630 -0.6800 20 7 -0.4986 -8.2674 0.7576 21 6 -1.6284 -8.5899 1.6326 22 6 -1.4379 -9.9681 2.2117 23 6 -1.8787 -11.2030 1.6832 24 7 -1.4867 -12.1212 2.5185 25 8 -0.8941 -11.6441 3.4585 26 6 -0.8098 -10.3099 3.3622 27 6 0.6321 -7.6621 1.1679 28 8 0.8657 -7.3210 2.3082 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8717 -3.6043 0.8905 33 1 2.8718 -3.6044 -0.8895 34 1 4.0935 -5.5120 0.6193 35 1 4.0215 -6.2370 -1.0159 36 1 3.8469 -7.6513 1.7006 37 1 4.8440 -8.0905 0.2734 38 1 2.9309 -8.8572 -0.9716 39 1 2.4508 -9.3357 0.6885 40 1 0.2997 -6.7351 -1.6183 41 1 1.2366 -8.2113 -2.0260 42 1 -1.4009 -8.3002 -1.1494 43 1 -0.2310 -9.6179 -0.8413 44 1 -1.6819 -7.8604 2.4408 45 1 -2.5534 -8.5624 1.0568 46 1 -2.4295 -11.3548 0.7667 47 1 -0.3346 -9.6397 4.0631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:07 Heat of formation + Delta-G solvation = -22.210123 kcal Electronic energy + Delta-G solvation = -31416.712733 eV Core-core repulsion = 27181.069756 eV Total energy + Delta-G solvation = -4235.642978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.96658 -42.43305 -40.18768 -38.28703 -37.55399 -35.68273 -35.50974 -33.59612 -33.12747 -32.34813 -31.96395 -29.04913 -28.12312 -27.77515 -25.43722 -24.18627 -23.78275 -23.19149 -22.97024 -21.93113 -20.86904 -19.64722 -18.93728 -18.81986 -18.58756 -17.89239 -17.38451 -17.29101 -16.88047 -16.52259 -16.48364 -16.00152 -15.73387 -15.39888 -14.89954 -14.68585 -14.56948 -14.44545 -14.28410 -14.23443 -14.02764 -13.77250 -13.54744 -13.40650 -13.17005 -12.98362 -12.87018 -12.73034 -12.47293 -12.30333 -12.19609 -12.14871 -11.96790 -11.66169 -11.63175 -11.45171 -11.30214 -11.04117 -10.72955 -10.59640 -10.57146 -9.85504 -9.60422 -8.19852 -6.34036 0.41585 1.11162 1.31243 1.40957 1.42625 1.55954 1.65528 1.99921 2.17803 2.26445 2.42081 3.13146 3.21244 3.32016 3.37256 3.49861 3.65537 3.75362 3.86548 3.91206 4.02067 4.06858 4.14600 4.26752 4.43707 4.47441 4.48976 4.53992 4.57677 4.61939 4.70601 4.74621 4.81095 4.82107 4.93343 4.95300 5.00019 5.04184 5.09714 5.29425 5.41473 5.47064 5.50524 5.59128 5.82055 5.99208 6.15179 6.44221 6.83913 7.06451 7.18105 7.21738 7.36242 8.93151 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.002596 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.658114 B =10782.930053 C =11493.890179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.048 3.952 10 C -0.110 4.110 11 C 0.525 3.475 12 O -0.576 6.576 13 N -0.604 5.604 14 C 0.090 3.910 15 C -0.124 4.124 16 C -0.099 4.099 17 C 0.121 3.879 18 C -0.134 4.134 19 C 0.106 3.894 20 N -0.613 5.613 21 C 0.202 3.798 22 C -0.230 4.230 23 C 0.018 3.982 24 N -0.393 5.393 25 O 0.081 5.919 26 C -0.031 4.031 27 C 0.514 3.486 28 O -0.566 6.566 29 H 0.263 0.737 30 H -0.014 1.014 31 H -0.026 1.026 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.134 0.866 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.220 0.780 47 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -26.514 -2.853 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.010 3.990 10 C -0.150 4.150 11 C 0.316 3.684 12 O -0.455 6.455 13 N -0.339 5.339 14 C -0.031 4.031 15 C -0.162 4.162 16 C -0.137 4.137 17 C 0.032 3.968 18 C -0.173 4.173 19 C -0.016 4.016 20 N -0.345 5.345 21 C 0.080 3.920 22 C -0.235 4.235 23 C -0.162 4.162 24 N -0.100 5.100 25 O 0.021 5.979 26 C -0.114 4.114 27 C 0.301 3.699 28 O -0.445 6.445 29 H 0.072 0.928 30 H 0.004 0.996 31 H -0.007 1.007 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.139 0.861 46 H 0.237 0.763 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.371 -27.501 -2.157 27.930 hybrid contribution -0.531 2.252 0.312 2.335 sum 3.840 -25.249 -1.845 25.606 Atomic orbital electron populations 1.70189 1.08325 1.27759 1.51462 1.26151 0.95751 1.03979 0.94565 0.85258 0.79314 0.77970 0.77614 1.17565 1.20331 1.20744 1.21711 0.93946 0.91519 1.50792 0.90677 1.18639 0.93515 0.92360 0.94456 1.21579 0.99271 0.89986 1.04168 1.21055 0.87569 0.85521 0.74278 1.90636 1.16053 1.87670 1.51106 1.48541 1.08857 1.03201 1.73276 1.22776 0.77996 0.99283 1.03087 1.22857 0.99921 0.93073 1.00322 1.22596 0.91236 0.94989 1.04910 1.21495 0.95441 0.85641 0.94216 1.23024 0.96437 1.01098 0.96710 1.22365 1.00558 1.00610 0.78017 1.48389 1.16433 1.58768 1.10957 1.19481 0.89254 0.89360 0.93883 1.21795 1.06276 0.97778 0.97661 1.25411 1.01485 0.87426 1.01875 1.73891 1.12505 1.24624 0.99013 1.84821 1.55852 1.20384 1.36804 1.26305 1.00302 0.84472 1.00286 1.21248 0.83530 0.75604 0.89485 1.90636 1.78332 1.52492 1.23001 0.92838 0.99559 1.00709 0.89076 0.87574 0.90361 0.87950 0.92276 0.85510 0.85495 0.90094 0.92213 0.84831 0.88948 0.87555 0.90919 0.86094 0.76337 0.75822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.23 13.29 21.45 0.28 -59.94 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 9 C 0.05 2.75 4.26 29.85 0.13 2.88 16 10 C -0.11 -4.72 4.66 29.85 0.14 -4.58 16 11 C 0.52 21.68 7.28 87.66 0.64 22.31 16 12 O -0.58 -28.82 14.53 -3.02 -0.04 -28.86 16 13 N -0.60 -17.97 2.92 -769.19 -2.25 -20.22 16 14 C 0.09 1.77 6.72 86.84 0.58 2.35 16 15 C -0.12 -1.81 7.09 32.07 0.23 -1.58 16 16 C -0.10 -1.42 6.06 31.60 0.19 -1.23 16 17 C 0.12 2.91 0.73 3.27 0.00 2.91 16 18 C -0.13 -2.59 6.20 31.46 0.19 -2.40 16 19 C 0.11 1.68 7.36 86.87 0.64 2.32 16 20 N -0.61 -14.31 2.92 -822.44 -2.40 -16.72 16 21 C 0.20 4.09 6.52 85.63 0.56 4.65 16 22 C -0.23 -4.11 5.91 -19.74 -0.12 -4.23 16 23 C 0.02 0.27 12.16 85.71 1.04 1.32 16 24 N -0.39 -8.07 12.07 -59.27 -0.72 -8.79 16 25 O 0.08 1.66 11.20 71.69 0.80 2.46 16 26 C -0.03 -0.58 12.26 67.18 0.82 0.25 16 27 C 0.51 15.69 5.91 87.62 0.52 16.21 16 28 O -0.57 -22.08 17.62 -3.06 -0.05 -22.13 16 29 H 0.26 15.74 8.31 -92.70 -0.77 14.96 16 30 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 31 H -0.03 -1.69 8.10 -2.39 -0.02 -1.71 16 32 H 0.09 3.64 7.86 -2.39 -0.02 3.62 16 33 H 0.11 3.91 8.14 -2.38 -0.02 3.89 16 34 H 0.08 1.63 7.50 -2.39 -0.02 1.61 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.13 0.88 7.45 -2.39 -0.02 0.87 16 39 H 0.08 1.18 7.82 -2.39 -0.02 1.16 16 40 H 0.06 1.66 6.77 -2.39 -0.02 1.64 16 41 H 0.13 1.40 7.44 -2.39 -0.02 1.38 16 42 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 1.83 7.95 -2.38 -0.02 1.81 16 45 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 47 H 0.23 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -90.87 391.24 4.90 -85.97 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.98 Total: 11.40 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.26 Total: 9.98 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -5.08 Total: -105.66 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: 0.70 Total: -48.53 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -90.87 4.90 -85.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.764 kcal (2) G-P(sol) polarization free energy of solvation -90.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds