Wall clock time and date at job start Wed Apr 1 2020 04:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48506 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47189 * 299.99506 * 3 2 1 6 6 H 1.48498 * 109.47341 * 59.99546 * 3 2 1 7 7 C 1.37878 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47085 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47248 * 180.02562 * 10 9 7 12 12 C 1.46246 * 118.79912 * 89.99938 * 11 10 9 13 13 C 1.52187 * 109.95191 * 162.69890 * 12 11 10 14 14 C 1.54468 * 110.31310 * 284.86064 * 13 12 11 15 15 C 1.55246 * 101.42886 * 206.33329 * 14 13 12 16 16 N 1.47481 * 104.79710 * 36.61215 * 15 14 13 17 17 C 1.34780 * 125.66533 * 155.94123 * 16 15 14 18 18 O 1.21698 * 120.00045 * 185.29882 * 17 16 15 19 19 C 1.46678 * 120.00095 * 5.29515 * 17 16 15 20 20 C 1.37869 * 126.23797 * 186.75061 * 19 17 16 21 21 C 1.39829 * 107.08661 * 179.97438 * 20 19 17 22 22 C 1.35447 * 107.86665 * 0.25881 * 21 20 19 23 23 N 1.35533 * 108.87147 * 359.57491 * 22 21 20 24 24 H 0.96997 * 125.67951 * 180.17281 * 23 22 21 25 25 C 1.47201 * 108.67196 * 335.67927 * 16 15 14 26 26 O 1.42280 * 110.64321 * 47.20212 * 13 12 11 27 27 C 1.43073 * 113.25262 * 293.86312 * 26 13 12 28 28 C 1.33841 * 118.80040 * 269.98375 * 11 10 9 29 29 O 1.21278 * 118.64761 * 2.60407 * 28 11 10 30 30 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46936 * 59.99693 * 9 7 2 32 32 H 1.09000 * 109.47045 * 299.99739 * 9 7 2 33 33 H 1.09003 * 109.47164 * 60.00225 * 10 9 7 34 34 H 1.09000 * 109.47286 * 299.99984 * 10 9 7 35 35 H 1.09001 * 109.38793 * 42.55080 * 12 11 10 36 36 H 1.09004 * 109.39158 * 282.84240 * 12 11 10 37 37 H 1.09005 * 111.01781 * 324.55766 * 14 13 12 38 38 H 1.09008 * 111.01652 * 88.44049 * 14 13 12 39 39 H 1.08999 * 110.48249 * 277.75371 * 15 14 13 40 40 H 1.09003 * 110.33029 * 155.39668 * 15 14 13 41 41 H 1.08006 * 126.45052 * 359.94678 * 20 19 17 42 42 H 1.08003 * 126.06466 * 180.02562 * 21 20 19 43 43 H 1.08005 * 125.56666 * 179.73718 * 22 21 20 44 44 H 1.09003 * 109.90610 * 121.11929 * 25 16 15 45 45 H 1.08994 * 109.91180 * 242.38951 * 25 16 15 46 46 H 1.08998 * 109.39220 * 288.14158 * 27 26 13 47 47 H 1.08994 * 109.31295 * 168.37753 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 6 1.1611 -5.5406 -1.2820 13 6 0.8060 -7.0065 -1.0796 14 6 2.0847 -7.8405 -0.8442 15 6 1.6361 -9.2396 -1.3456 16 7 0.7642 -8.9634 -2.5025 17 6 0.5113 -9.8143 -3.5167 18 8 -0.1490 -9.4454 -4.4701 19 6 1.0320 -11.1848 -3.4715 20 6 0.9648 -12.1161 -4.4859 21 6 1.5813 -13.2800 -4.0165 22 6 1.9999 -13.0467 -2.7496 23 7 1.6774 -11.7752 -2.4086 24 1 1.8663 -11.3529 -1.5560 25 6 0.2110 -7.6065 -2.3624 26 8 -0.0913 -7.1590 0.0140 27 6 0.4916 -6.8162 1.2749 28 6 1.1904 -5.4897 1.1725 29 8 1.4742 -4.9017 2.1945 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5570 -0.8897 32 1 0.6242 -2.5567 0.8903 33 1 2.8720 -3.6043 0.8906 34 1 2.8721 -3.6043 -0.8894 35 1 2.0082 -5.4641 -1.9636 36 1 0.3060 -5.0168 -1.7093 37 1 2.9158 -7.4574 -1.4364 38 1 2.3424 -7.8707 0.2146 39 1 1.0798 -9.7631 -0.5680 40 1 2.5012 -9.8265 -1.6543 41 1 0.5193 -11.9735 -5.4594 42 1 1.6991 -14.2028 -4.5653 43 1 2.5099 -13.7569 -2.1157 44 1 0.4945 -6.9996 -3.2223 45 1 -0.8748 -7.6550 -2.2807 46 1 1.2110 -7.5833 1.5614 47 1 -0.2924 -6.7551 2.0296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271394500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:29 Heat of formation + Delta-G solvation = -66.680616 kcal Electronic energy + Delta-G solvation = -30872.436145 eV Core-core repulsion = 26634.864782 eV Total energy + Delta-G solvation = -4237.571363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61303 -42.04127 -40.46932 -39.34056 -37.33351 -37.04642 -35.16857 -33.17627 -32.11247 -31.77451 -31.05628 -30.21081 -28.80185 -27.37160 -26.37314 -25.03678 -23.68088 -22.77784 -22.06983 -21.53285 -21.01947 -19.80915 -19.27515 -18.73444 -18.51450 -17.60138 -17.39137 -17.33217 -16.90076 -16.55084 -16.22433 -16.15382 -15.75230 -15.37087 -15.07610 -14.81371 -14.72276 -14.54562 -14.47677 -14.32460 -14.14235 -14.09990 -13.84858 -13.52288 -13.43098 -13.21196 -13.13248 -12.90943 -12.72649 -12.55350 -12.50052 -12.26950 -11.93008 -11.84357 -11.51343 -11.36884 -11.28680 -10.62395 -10.46193 -10.04822 -9.88542 -9.72877 -9.17232 -8.25223 -6.37874 0.42594 1.37425 1.38942 1.43914 1.52259 1.60611 1.81541 1.83420 2.22286 2.31539 2.36335 2.40018 3.07540 3.08573 3.21893 3.27067 3.51646 3.70059 3.93156 4.03510 4.07070 4.22224 4.25687 4.30665 4.35805 4.40250 4.44426 4.46661 4.49194 4.54589 4.59255 4.64627 4.80977 4.84504 4.90501 4.93160 5.11189 5.15057 5.29809 5.41751 5.53600 5.71502 5.76087 5.79393 5.94240 6.13296 6.26328 6.38800 6.54266 6.78236 6.93436 7.03415 7.32005 8.87187 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002207 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.795805 B =12685.025329 C =13279.201629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.024 3.976 10 C 0.130 3.870 11 N -0.597 5.597 12 C 0.095 3.905 13 C 0.097 3.903 14 C -0.152 4.152 15 C 0.091 3.909 16 N -0.617 5.617 17 C 0.601 3.399 18 O -0.575 6.575 19 C -0.080 4.080 20 C -0.124 4.124 21 C -0.228 4.228 22 C 0.045 3.955 23 N -0.533 5.533 24 H 0.429 0.571 25 C 0.130 3.870 26 O -0.359 6.359 27 C 0.061 3.939 28 C 0.470 3.530 29 O -0.588 6.588 30 H 0.264 0.736 31 H -0.005 1.005 32 H -0.026 1.026 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.215 0.785 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 -30.665 -3.712 31.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C 0.008 3.992 11 N -0.328 5.328 12 C -0.028 4.028 13 C 0.056 3.944 14 C -0.190 4.190 15 C -0.031 4.031 16 N -0.350 5.350 17 C 0.394 3.606 18 O -0.455 6.455 19 C -0.193 4.193 20 C -0.151 4.151 21 C -0.251 4.251 22 C -0.092 4.092 23 N -0.134 5.134 24 H 0.273 0.727 25 C 0.007 3.993 26 O -0.278 6.278 27 C -0.018 4.018 28 C 0.259 3.741 29 O -0.469 6.469 30 H 0.072 0.928 31 H 0.013 0.987 32 H -0.008 1.008 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.179 0.821 43 H 0.232 0.768 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.148 0.852 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.851 -30.060 -3.637 31.045 hybrid contribution -0.115 1.848 0.331 1.881 sum 6.736 -28.212 -3.306 29.193 Atomic orbital electron populations 1.70132 1.08042 1.27806 1.51438 1.26059 0.95792 1.03731 0.94533 0.85309 0.79206 0.78273 0.77699 1.18037 1.20081 1.20804 1.21579 0.93767 0.91752 1.50824 0.91385 1.19174 0.94611 0.93373 0.94263 1.21520 0.94162 0.81413 1.02128 1.47715 1.55726 1.23128 1.06234 1.22068 1.02866 0.92319 0.85544 1.22035 0.91289 0.93067 0.88008 1.23486 0.96761 0.93821 1.04934 1.22818 0.94195 0.98333 0.87753 1.48369 1.48262 1.15221 1.23163 1.17030 0.79247 0.83496 0.80867 1.90838 1.42448 1.77770 1.34428 1.20006 1.12628 0.93991 0.92674 1.21531 1.01817 0.93365 0.98435 1.21224 1.07319 0.99751 0.96830 1.22806 1.02368 0.86238 0.97784 1.42649 1.44218 1.12272 1.14274 0.72693 1.21588 0.99407 0.83098 0.95197 1.88070 1.37998 1.87340 1.14399 1.22958 1.00653 0.90922 0.87260 1.21729 0.79725 0.89581 0.83089 1.90747 1.56209 1.64400 1.35583 0.92774 0.98674 1.00789 0.92005 0.88986 0.86761 0.91660 0.87405 0.87205 0.88475 0.87951 0.84714 0.82132 0.76837 0.88745 0.90447 0.85171 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.54 -31.06 9.11 25.60 0.23 -30.82 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.29 5.29 29.85 0.16 1.45 16 10 C 0.13 5.32 5.22 86.38 0.45 5.77 16 11 N -0.60 -19.78 2.81 -825.94 -2.32 -22.10 16 12 C 0.09 2.34 5.25 86.16 0.45 2.79 16 13 C 0.10 1.81 0.83 -10.36 -0.01 1.80 16 14 C -0.15 -1.73 5.82 31.86 0.19 -1.54 16 15 C 0.09 0.83 5.26 86.96 0.46 1.29 16 16 N -0.62 -10.97 3.33 -816.61 -2.72 -13.70 16 17 C 0.60 14.08 7.81 86.45 0.68 14.75 16 18 O -0.57 -18.50 17.23 -4.34 -0.07 -18.58 16 19 C -0.08 -1.47 6.82 40.35 0.28 -1.20 16 20 C -0.12 -2.29 10.66 22.57 0.24 -2.05 16 21 C -0.23 -2.68 10.81 22.01 0.24 -2.44 16 22 C 0.05 0.31 11.89 83.48 0.99 1.30 16 23 N -0.53 -5.03 5.36 -183.62 -0.98 -6.01 16 24 H 0.43 1.68 5.35 -92.71 -0.50 1.18 16 25 C 0.13 2.59 6.24 86.45 0.54 3.13 16 26 O -0.36 -7.74 10.37 -148.98 -1.55 -9.29 16 27 C 0.06 1.28 6.35 71.11 0.45 1.74 16 28 C 0.47 15.68 7.39 87.67 0.65 16.33 16 29 O -0.59 -25.70 16.38 -3.02 -0.05 -25.75 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 33 H 0.06 2.72 7.30 -2.39 -0.02 2.70 16 34 H 0.09 3.25 7.95 -2.39 -0.02 3.23 16 35 H 0.11 2.24 7.73 -2.39 -0.02 2.22 16 36 H 0.07 1.85 8.13 -2.38 -0.02 1.83 16 37 H 0.11 1.09 7.83 -2.38 -0.02 1.07 16 38 H 0.11 1.01 5.83 -2.38 -0.01 1.00 16 39 H 0.10 0.57 7.85 -2.39 -0.02 0.55 16 40 H 0.10 0.49 6.20 -2.39 -0.01 0.48 16 41 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.22 -0.42 8.06 -2.91 -0.02 -0.44 16 44 H 0.09 1.89 7.81 -2.39 -0.02 1.87 16 45 H 0.08 1.77 8.06 -2.39 -0.02 1.75 16 46 H 0.13 1.67 6.53 -2.39 -0.02 1.66 16 47 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -87.80 381.07 1.57 -86.23 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.51 Total: 7.94 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.45 Total: 12.56 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -5.74 Total: -99.93 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.67 Total: -53.61 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -87.80 1.57 -86.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271394500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.549 kcal (2) G-P(sol) polarization free energy of solvation -87.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds