Wall clock time and date at job start Wed Apr 1 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00228 * 2 1 4 4 H 1.48490 * 109.47132 * 270.00038 * 3 2 1 5 5 H 1.48499 * 109.46527 * 29.99990 * 3 2 1 6 6 H 1.48498 * 109.47061 * 149.99889 * 3 2 1 7 7 C 1.37880 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00027 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00322 * 180.02562 * 7 2 1 10 10 C 1.53497 * 114.20589 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98300 * 139.64814 * 10 9 7 12 12 C 1.34785 * 136.05316 * 152.83755 * 11 10 9 13 13 O 1.21277 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99786 * 180.02562 * 12 11 10 15 15 C 1.54410 * 129.01405 * 180.02562 * 14 12 11 16 16 C 1.54414 * 78.96684 * 179.32481 * 15 14 12 17 17 N 1.46499 * 129.01603 * 180.67308 * 16 15 14 18 18 C 1.34771 * 119.99956 * 179.97438 * 17 16 15 19 19 O 1.21281 * 120.00236 * 0.02562 * 18 17 16 20 20 C 1.50707 * 119.99977 * 179.97438 * 18 17 16 21 21 H 1.08996 * 115.54436 * 56.63740 * 20 18 17 22 22 C 1.52997 * 117.49884 * 202.30888 * 20 18 17 23 23 C 1.52997 * 117.50018 * 270.93245 * 20 18 17 24 24 H 1.09002 * 117.50042 * 145.01699 * 23 20 18 25 25 C 1.50704 * 117.49809 * 359.97438 * 23 20 18 26 26 N 1.34774 * 119.99838 * 142.63789 * 25 23 20 27 27 O 1.21282 * 120.00349 * 322.64066 * 25 23 20 28 28 C 1.54888 * 129.08947 * 299.94148 * 14 12 11 29 29 C 1.54887 * 129.95332 * 58.83219 * 14 12 11 30 30 C 1.47063 * 87.88882 * 333.10090 * 11 10 9 31 31 H 0.96999 * 119.99886 * 0.02562 * 1 2 3 32 32 H 1.08994 * 113.28533 * 46.92738 * 9 7 2 33 33 H 1.08999 * 113.46938 * 24.87605 * 10 9 7 34 34 H 1.08993 * 113.52100 * 254.43781 * 10 9 7 35 35 H 1.09001 * 114.93615 * 291.84689 * 15 14 12 36 36 H 1.09002 * 114.93366 * 66.80654 * 15 14 12 37 37 H 0.96998 * 119.99821 * 0.02562 * 17 16 15 38 38 H 1.09005 * 117.49142 * 214.98101 * 22 20 18 39 39 H 1.08999 * 117.49860 * 359.97438 * 22 20 18 40 40 H 0.97007 * 120.00015 * 359.97438 * 26 25 23 41 41 H 0.96996 * 119.99822 * 180.02562 * 26 25 23 42 42 H 1.09002 * 114.98036 * 293.22070 * 28 14 12 43 43 H 1.09002 * 114.98027 * 68.33549 * 28 14 12 44 44 H 1.09004 * 114.97848 * 292.26018 * 29 14 12 45 45 H 1.08998 * 114.98021 * 67.43965 * 29 14 12 46 46 H 1.09000 * 113.46968 * 141.67212 * 30 11 10 47 47 H 1.08997 * 113.46892 * 272.11491 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.1409 -2.5941 0.0000 11 7 5.1417 -2.0875 -0.9512 12 6 6.4154 -2.3893 -1.2722 13 8 6.9882 -3.2908 -0.6978 14 6 7.1278 -1.6066 -2.3450 15 6 8.5689 -1.7720 -2.8743 16 6 8.0633 -0.6073 -3.7529 17 7 8.7665 0.1228 -4.8106 18 6 8.1440 1.1201 -5.4695 19 8 7.0017 1.4136 -5.1865 20 6 8.8676 1.8715 -6.5571 21 1 9.2564 1.2606 -7.3718 22 6 8.3618 3.2731 -6.9042 23 6 9.6796 3.1014 -6.1461 24 1 10.6029 3.2998 -6.6904 25 6 9.6941 3.4691 -4.6847 26 7 10.8211 3.9475 -4.1214 27 8 8.6916 3.3344 -4.0155 28 6 6.7578 -1.4380 -3.8396 29 6 7.4272 -0.0897 -2.4366 30 6 4.1432 -1.1023 -1.3931 31 1 -0.4850 0.8400 -0.0004 32 1 3.9422 -0.5109 0.7320 33 1 3.4917 -3.3618 -0.4210 34 1 4.5634 -2.8811 0.9628 35 1 9.3524 -1.5059 -2.1648 36 1 8.7579 -2.7027 -3.4093 37 1 9.6799 -0.1121 -5.0372 38 1 8.4181 3.5844 -7.9474 39 1 7.5053 3.6516 -6.3462 40 1 11.6231 4.0548 -4.6565 41 1 10.8305 4.1838 -3.1807 42 1 6.8307 -2.3467 -4.4372 43 1 5.8536 -0.8590 -4.0275 44 1 6.5510 0.5454 -2.5672 45 1 8.1371 0.2847 -1.6991 46 1 4.5676 -0.1224 -1.6119 47 1 3.4947 -1.4685 -2.1889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271941884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:18 Heat of formation + Delta-G solvation = 63.610025 kcal Electronic energy + Delta-G solvation = -30853.607222 eV Core-core repulsion = 26621.685685 eV Total energy + Delta-G solvation = -4231.921537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22003 -40.68821 -39.28844 -38.75852 -37.00930 -36.14524 -34.01357 -33.83760 -32.59209 -29.75869 -26.52053 -25.93640 -25.66308 -25.63057 -25.03183 -24.75284 -23.28327 -21.06924 -20.37427 -19.92789 -18.99832 -18.36042 -17.90300 -17.56291 -17.17032 -16.76817 -16.28909 -15.83361 -15.63652 -14.94566 -14.90680 -14.82348 -14.42573 -14.19252 -14.17252 -13.92799 -13.85907 -13.39063 -13.31543 -12.74619 -12.38480 -12.14346 -11.90318 -11.74442 -11.65138 -11.52024 -11.17622 -11.16283 -11.12068 -10.86483 -10.68899 -10.41944 -10.39166 -10.31549 -10.07345 -9.93637 -9.93340 -9.74156 -9.35570 -9.13024 -9.10667 -8.61621 -8.02368 -6.15525 -4.18534 1.87074 2.54512 2.57735 2.85399 3.02893 3.30019 3.34944 3.38620 3.41325 3.44265 4.06598 4.15162 4.23974 4.27211 4.36550 4.37704 4.39309 4.47007 4.54052 4.62949 4.74045 4.93118 5.08728 5.11044 5.25775 5.52071 5.58014 5.63929 5.67804 5.77213 5.85100 5.90502 5.97614 6.00919 6.07150 6.16726 6.31233 6.36755 6.41954 6.46982 6.48252 6.59872 6.89132 7.23096 7.29626 7.60110 7.88698 8.12741 8.32744 8.42060 8.65196 8.87278 9.45594 10.96276 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003174 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.741128 B = 8819.954502 C =10341.098251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.079 3.921 3 Si 0.870 3.130 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.510 4.510 8 H 0.081 0.919 9 C -0.013 4.013 10 C 0.116 3.884 11 N -0.635 5.635 12 C 0.600 3.400 13 O -0.554 6.554 14 C -0.146 4.146 15 C -0.079 4.079 16 C 0.100 3.900 17 N -0.675 5.675 18 C 0.547 3.453 19 O -0.498 6.498 20 C -0.156 4.156 21 H 0.139 0.861 22 C -0.111 4.111 23 C -0.178 4.178 24 H 0.130 0.870 25 C 0.532 3.468 26 N -0.853 5.853 27 O -0.514 6.514 28 C -0.101 4.101 29 C -0.094 4.094 30 C 0.086 3.914 31 H 0.267 0.733 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.403 0.597 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.400 0.600 41 H 0.404 0.596 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.212 6.722 -16.349 31.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.124 4.124 3 Si 0.697 3.303 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.548 4.548 8 H 0.099 0.901 9 C -0.033 4.033 10 C -0.005 4.005 11 N -0.368 5.368 12 C 0.388 3.612 13 O -0.434 6.434 14 C -0.150 4.150 15 C -0.118 4.118 16 C 0.011 3.989 17 N -0.325 5.325 18 C 0.332 3.668 19 O -0.370 6.370 20 C -0.177 4.177 21 H 0.157 0.843 22 C -0.149 4.149 23 C -0.200 4.200 24 H 0.148 0.852 25 C 0.315 3.685 26 N -0.417 5.417 27 O -0.388 6.388 28 C -0.140 4.140 29 C -0.133 4.133 30 C -0.036 4.036 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.238 0.762 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.228 0.772 41 H 0.235 0.765 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 24.945 6.407 -15.640 30.131 hybrid contribution 1.504 1.044 -0.247 1.847 sum 26.449 7.451 -15.886 31.740 Atomic orbital electron populations 1.69886 1.06320 1.27305 1.49427 1.24973 0.94650 0.99069 0.93720 0.86936 0.80526 0.83677 0.79197 1.19693 1.21162 1.18675 1.20748 0.87379 0.94884 1.51808 0.90126 1.20876 0.97066 0.92977 0.92340 1.23152 0.86274 0.99550 0.91526 1.49780 1.09695 1.37023 1.40289 1.17769 0.80127 0.82098 0.81230 1.90652 1.66465 1.32073 1.54202 1.23237 0.97659 0.98103 0.96051 1.23923 0.95212 0.96512 0.96144 1.22739 0.94346 0.93187 0.88607 1.44424 1.16635 1.35333 1.36082 1.19372 0.86726 0.79230 0.81491 1.90760 1.17575 1.64370 1.64314 1.22239 1.03581 0.91424 1.00506 0.84329 1.23072 0.95503 0.95155 1.01163 1.22346 0.99186 1.03727 0.94736 0.85207 1.19669 0.83383 0.77016 0.88391 1.43758 1.13674 1.69176 1.15110 1.90928 1.32700 1.51709 1.63423 1.24457 0.98063 0.98997 0.92467 1.24399 1.00778 0.93193 0.94918 1.23844 0.86955 0.90669 1.02178 0.92358 0.91525 0.90001 0.91869 0.90063 0.89954 0.76183 0.86588 0.86280 0.77198 0.76487 0.90603 0.89316 0.89348 0.90753 0.92573 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 21.24 27.42 -169.99 -4.66 16.58 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.18 6.22 56.52 0.35 -5.83 16 7 C -0.51 -13.65 9.38 -34.44 -0.32 -13.98 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 9 C -0.01 -0.30 2.99 -91.39 -0.27 -0.57 16 10 C 0.12 2.42 8.19 -8.50 -0.07 2.35 16 11 N -0.64 -13.06 3.69 -185.38 -0.68 -13.74 16 12 C 0.60 12.01 8.19 -10.98 -0.09 11.92 16 13 O -0.55 -12.45 17.87 5.56 0.10 -12.35 16 14 C -0.15 -2.40 3.26 -171.99 -0.56 -2.96 16 15 C -0.08 -1.02 7.79 -26.72 -0.21 -1.23 16 16 C 0.10 1.32 3.89 -147.99 -0.58 0.75 16 17 N -0.68 -7.14 5.71 -63.53 -0.36 -7.50 16 18 C 0.55 6.71 5.52 -10.98 -0.06 6.65 16 19 O -0.50 -8.65 15.94 -4.98 -0.08 -8.73 16 20 C -0.16 -1.14 6.18 -91.77 -0.57 -1.71 16 21 H 0.14 0.54 8.14 -51.93 -0.42 0.11 16 22 C -0.11 -0.81 9.58 -26.73 -0.26 -1.06 16 23 C -0.18 -1.05 6.19 -91.77 -0.57 -1.62 16 24 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 25 C 0.53 4.85 7.55 -10.98 -0.08 4.76 16 26 N -0.85 -4.28 8.87 31.22 0.28 -4.01 16 27 O -0.51 -7.69 15.39 -4.98 -0.08 -7.76 16 28 C -0.10 -1.50 7.75 -28.15 -0.22 -1.72 16 29 C -0.09 -1.50 7.75 -28.07 -0.22 -1.72 16 30 C 0.09 1.82 7.52 -8.63 -0.06 1.75 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.07 1.56 6.50 -51.93 -0.34 1.23 16 33 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 0.97 7.97 -51.93 -0.41 0.56 16 36 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 37 H 0.40 2.75 8.83 -40.82 -0.36 2.39 16 38 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.12 1.29 7.70 -51.93 -0.40 0.89 16 40 H 0.40 0.54 8.83 -40.82 -0.36 0.18 16 41 H 0.40 2.05 8.93 -40.82 -0.36 1.69 16 42 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 43 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 44 H 0.09 1.63 7.46 -51.93 -0.39 1.24 16 45 H 0.07 1.15 7.97 -51.93 -0.41 0.73 16 46 H 0.06 1.16 7.77 -51.93 -0.40 0.76 16 47 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -38.04 397.32 -9.77 -47.81 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.82 Total: 5.69 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -4.23 Total: 3.73 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.00 Total: -50.96 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.06 Total: -28.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.66 Total: 16.58 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.04 -9.77 -47.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271941884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.421 kcal (2) G-P(sol) polarization free energy of solvation -38.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds