Wall clock time and date at job start Wed Apr 1 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00228 * 2 1 4 4 H 1.48490 * 109.47132 * 270.00038 * 3 2 1 5 5 H 1.48499 * 109.46527 * 29.99990 * 3 2 1 6 6 H 1.48498 * 109.47061 * 149.99889 * 3 2 1 7 7 C 1.37880 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00027 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00322 * 180.02562 * 7 2 1 10 10 C 1.53497 * 114.20589 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98300 * 139.64814 * 10 9 7 12 12 C 1.34785 * 136.05316 * 152.83755 * 11 10 9 13 13 O 1.21277 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99786 * 180.02562 * 12 11 10 15 15 C 1.54410 * 129.01405 * 180.02562 * 14 12 11 16 16 C 1.54414 * 78.96684 * 179.32481 * 15 14 12 17 17 N 1.46499 * 129.01603 * 180.67308 * 16 15 14 18 18 C 1.34771 * 119.99956 * 179.97438 * 17 16 15 19 19 O 1.21281 * 120.00236 * 0.02562 * 18 17 16 20 20 C 1.50707 * 119.99977 * 179.97438 * 18 17 16 21 21 H 1.08996 * 115.54436 * 56.63740 * 20 18 17 22 22 C 1.52997 * 117.49884 * 202.30888 * 20 18 17 23 23 C 1.52997 * 117.50018 * 270.93245 * 20 18 17 24 24 H 1.09002 * 117.50042 * 145.01699 * 23 20 18 25 25 C 1.50704 * 117.49809 * 359.97438 * 23 20 18 26 26 N 1.34774 * 119.99838 * 142.63789 * 25 23 20 27 27 O 1.21282 * 120.00349 * 322.64066 * 25 23 20 28 28 C 1.54888 * 129.08947 * 299.94148 * 14 12 11 29 29 C 1.54887 * 129.95332 * 58.83219 * 14 12 11 30 30 C 1.47063 * 87.88882 * 333.10090 * 11 10 9 31 31 H 0.96999 * 119.99886 * 0.02562 * 1 2 3 32 32 H 1.08994 * 113.28533 * 46.92738 * 9 7 2 33 33 H 1.08999 * 113.46938 * 24.87605 * 10 9 7 34 34 H 1.08993 * 113.52100 * 254.43781 * 10 9 7 35 35 H 1.09001 * 114.93615 * 291.84689 * 15 14 12 36 36 H 1.09002 * 114.93366 * 66.80654 * 15 14 12 37 37 H 0.96998 * 119.99821 * 0.02562 * 17 16 15 38 38 H 1.09005 * 117.49142 * 214.98101 * 22 20 18 39 39 H 1.08999 * 117.49860 * 359.97438 * 22 20 18 40 40 H 0.97007 * 120.00015 * 359.97438 * 26 25 23 41 41 H 0.96996 * 119.99822 * 180.02562 * 26 25 23 42 42 H 1.09002 * 114.98036 * 293.22070 * 28 14 12 43 43 H 1.09002 * 114.98027 * 68.33549 * 28 14 12 44 44 H 1.09004 * 114.97848 * 292.26018 * 29 14 12 45 45 H 1.08998 * 114.98021 * 67.43965 * 29 14 12 46 46 H 1.09000 * 113.46968 * 141.67212 * 30 11 10 47 47 H 1.08997 * 113.46892 * 272.11491 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.1409 -2.5941 0.0000 11 7 5.1417 -2.0875 -0.9512 12 6 6.4154 -2.3893 -1.2722 13 8 6.9882 -3.2908 -0.6978 14 6 7.1278 -1.6066 -2.3450 15 6 8.5689 -1.7720 -2.8743 16 6 8.0633 -0.6073 -3.7529 17 7 8.7665 0.1228 -4.8106 18 6 8.1440 1.1201 -5.4695 19 8 7.0017 1.4136 -5.1865 20 6 8.8676 1.8715 -6.5571 21 1 9.2564 1.2606 -7.3718 22 6 8.3618 3.2731 -6.9042 23 6 9.6796 3.1014 -6.1461 24 1 10.6029 3.2998 -6.6904 25 6 9.6941 3.4691 -4.6847 26 7 10.8211 3.9475 -4.1214 27 8 8.6916 3.3344 -4.0155 28 6 6.7578 -1.4380 -3.8396 29 6 7.4272 -0.0897 -2.4366 30 6 4.1432 -1.1023 -1.3931 31 1 -0.4850 0.8400 -0.0004 32 1 3.9422 -0.5109 0.7320 33 1 3.4917 -3.3618 -0.4210 34 1 4.5634 -2.8811 0.9628 35 1 9.3524 -1.5059 -2.1648 36 1 8.7579 -2.7027 -3.4093 37 1 9.6799 -0.1121 -5.0372 38 1 8.4181 3.5844 -7.9474 39 1 7.5053 3.6516 -6.3462 40 1 11.6231 4.0548 -4.6565 41 1 10.8305 4.1838 -3.1807 42 1 6.8307 -2.3467 -4.4372 43 1 5.8536 -0.8590 -4.0275 44 1 6.5510 0.5454 -2.5672 45 1 8.1371 0.2847 -1.6991 46 1 4.5676 -0.1224 -1.6119 47 1 3.4947 -1.4685 -2.1889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271941884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:17 Heat of formation + Delta-G solvation = 32.744634 kcal Electronic energy + Delta-G solvation = -30854.945646 eV Core-core repulsion = 26621.685685 eV Total energy + Delta-G solvation = -4233.259961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.40420 -41.43281 -40.92999 -39.68924 -38.71069 -36.81167 -34.83618 -34.71859 -34.62186 -31.58286 -28.08317 -27.08891 -26.88847 -26.76224 -26.68924 -25.54802 -24.53867 -22.04997 -21.52659 -20.87201 -20.35528 -19.44498 -19.12086 -19.03432 -18.17022 -18.06068 -17.42495 -17.02837 -16.80376 -16.34562 -15.97161 -15.83159 -15.56885 -15.54049 -15.37880 -15.17536 -15.13159 -14.77455 -14.71815 -14.21965 -13.75194 -13.63390 -13.50230 -12.99142 -12.93983 -12.84482 -12.81037 -12.49171 -12.32177 -11.88752 -11.76389 -11.63731 -11.61764 -11.59634 -11.51573 -11.31315 -11.14144 -11.02078 -10.79714 -10.72039 -10.64349 -10.13493 -9.75082 -8.34254 -6.40184 1.19198 1.28773 1.32430 1.37137 1.42379 1.58320 1.75075 1.93479 2.29832 2.53318 2.84915 2.95849 3.06022 3.14077 3.24825 3.25885 3.34008 3.36028 3.63033 3.74005 3.83584 3.95154 4.06063 4.20183 4.30817 4.35390 4.38822 4.48163 4.52634 4.55770 4.65574 4.69083 4.70592 4.73690 4.78067 4.80538 4.85281 4.86391 4.92034 5.10790 5.31018 5.48168 5.54741 5.86781 6.22956 6.48634 6.51699 6.64793 6.70034 7.00774 7.26920 7.29064 7.37566 8.81118 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003174 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.741128 B = 8819.954502 C =10341.098251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.032 3.968 3 Si 0.924 3.076 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.507 4.507 8 H 0.052 0.948 9 C -0.019 4.019 10 C 0.120 3.880 11 N -0.637 5.637 12 C 0.599 3.401 13 O -0.577 6.577 14 C -0.169 4.169 15 C -0.055 4.055 16 C 0.121 3.879 17 N -0.660 5.660 18 C 0.537 3.463 19 O -0.561 6.561 20 C -0.155 4.155 21 H 0.187 0.813 22 C -0.124 4.124 23 C -0.155 4.155 24 H 0.187 0.813 25 C 0.519 3.481 26 N -0.831 5.831 27 O -0.584 6.584 28 C -0.100 4.100 29 C -0.102 4.102 30 C 0.100 3.900 31 H 0.269 0.731 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.426 0.574 38 H 0.155 0.845 39 H 0.071 0.929 40 H 0.421 0.579 41 H 0.404 0.596 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.003 7.110 -18.789 36.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.545 4.545 8 H 0.070 0.930 9 C -0.038 4.038 10 C -0.001 4.001 11 N -0.370 5.370 12 C 0.389 3.611 13 O -0.458 6.458 14 C -0.173 4.173 15 C -0.093 4.093 16 C 0.031 3.969 17 N -0.311 5.311 18 C 0.325 3.675 19 O -0.437 6.437 20 C -0.176 4.176 21 H 0.204 0.796 22 C -0.162 4.162 23 C -0.176 4.176 24 H 0.204 0.796 25 C 0.304 3.696 26 N -0.395 5.395 27 O -0.464 6.464 28 C -0.140 4.140 29 C -0.142 4.142 30 C -0.023 4.023 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.265 0.735 38 H 0.172 0.828 39 H 0.089 0.911 40 H 0.253 0.747 41 H 0.235 0.765 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 29.865 6.794 -18.107 35.580 hybrid contribution 0.008 0.912 0.563 1.072 sum 29.873 7.706 -17.543 35.490 Atomic orbital electron populations 1.69995 1.07889 1.28242 1.51497 1.25651 0.95203 1.02222 0.93712 0.86066 0.79896 0.79991 0.79207 1.19757 1.20725 1.17253 1.20904 0.89328 0.93677 1.50605 0.93016 1.20775 0.94765 0.94761 0.93538 1.23044 0.86455 0.98288 0.92351 1.49762 1.10106 1.36838 1.40257 1.18292 0.79505 0.81911 0.81421 1.90629 1.66720 1.33240 1.55260 1.23207 1.00377 0.97986 0.95744 1.23828 0.92753 0.97060 0.95666 1.22403 0.93891 0.92501 0.88077 1.44360 1.17433 1.34591 1.34748 1.20369 0.86304 0.78936 0.81936 1.90745 1.20588 1.66000 1.66352 1.22364 1.03773 0.91577 0.99910 0.79585 1.23112 0.94903 0.95422 1.02765 1.22550 1.00635 1.01650 0.92741 0.79603 1.20372 0.83100 0.76390 0.89746 1.43644 1.13483 1.67030 1.15357 1.90919 1.35319 1.54847 1.65282 1.24439 0.98097 0.99814 0.91606 1.24404 1.00003 0.92419 0.97341 1.23547 0.86956 0.91064 1.00757 0.92181 0.91565 0.89618 0.90871 0.88589 0.87501 0.73485 0.82767 0.91069 0.74681 0.76522 0.88564 0.92159 0.92867 0.90431 0.92395 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 2 C 0.03 1.80 5.47 84.66 0.46 2.26 16 3 Si 0.92 44.68 27.42 68.60 1.88 46.56 16 4 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.25 -11.38 6.22 99.48 0.62 -10.76 16 7 C -0.51 -27.92 9.38 25.60 0.24 -27.68 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 C -0.02 -0.88 2.99 -11.29 -0.03 -0.91 16 10 C 0.12 5.04 8.19 83.18 0.68 5.72 16 11 N -0.64 -26.31 3.69 -858.80 -3.17 -29.48 16 12 C 0.60 23.74 8.19 87.66 0.72 24.45 16 13 O -0.58 -25.41 17.87 -3.02 -0.05 -25.47 16 14 C -0.17 -5.43 3.26 -63.51 -0.21 -5.64 16 15 C -0.05 -1.25 7.79 30.60 0.24 -1.01 16 16 C 0.12 3.03 3.89 -6.87 -0.03 3.00 16 17 N -0.66 -12.43 5.71 -473.31 -2.70 -15.14 16 18 C 0.54 12.59 5.52 87.66 0.48 13.07 16 19 O -0.56 -20.27 15.94 7.04 0.11 -20.16 16 20 C -0.16 -1.76 6.18 -11.54 -0.07 -1.83 16 21 H 0.19 0.33 8.14 -2.39 -0.02 0.31 16 22 C -0.12 -1.55 9.58 30.59 0.29 -1.26 16 23 C -0.15 -1.22 6.19 -11.54 -0.07 -1.30 16 24 H 0.19 -0.61 8.14 -2.39 -0.02 -0.62 16 25 C 0.52 8.54 7.55 87.66 0.66 9.20 16 26 N -0.83 -6.12 8.87 -173.53 -1.54 -7.66 16 27 O -0.58 -17.91 15.39 7.04 0.11 -17.81 16 28 C -0.10 -2.94 7.75 29.67 0.23 -2.71 16 29 C -0.10 -3.32 7.75 29.73 0.23 -3.09 16 30 C 0.10 4.28 7.52 83.10 0.63 4.91 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 32 H 0.07 3.11 6.50 -2.39 -0.02 3.09 16 33 H 0.09 3.51 8.10 -2.39 -0.02 3.49 16 34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.10 1.96 7.97 -2.39 -0.02 1.94 16 36 H 0.11 1.99 7.97 -2.39 -0.02 1.97 16 37 H 0.43 4.07 8.83 -92.71 -0.82 3.26 16 38 H 0.15 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.07 1.63 7.70 -2.39 -0.02 1.62 16 40 H 0.42 -0.61 8.83 -92.70 -0.82 -1.43 16 41 H 0.40 3.40 8.93 -92.71 -0.83 2.57 16 42 H 0.10 2.40 7.97 -2.39 -0.02 2.38 16 43 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 44 H 0.05 2.09 7.46 -2.39 -0.02 2.07 16 45 H 0.08 2.40 7.97 -2.39 -0.02 2.38 16 46 H 0.06 2.47 7.77 -2.39 -0.02 2.45 16 47 H 0.09 3.69 8.10 -2.39 -0.02 3.67 16 Total: -1.00 -90.19 397.32 -2.12 -92.31 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -1.51 Total: 16.64 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 4.45 Total: 17.19 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -7.12 Total: -109.27 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: 0.17 Total: -63.43 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -90.19 -2.12 -92.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271941884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.056 kcal (2) G-P(sol) polarization free energy of solvation -90.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds