Wall clock time and date at job start Wed Apr 1 2020 04:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48499 * 109.46993 * 240.00036 * 3 2 1 5 5 H 1.48495 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46532 * 120.00237 * 3 2 1 7 7 C 1.37878 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99884 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46823 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.46742 * 180.02562 * 10 9 7 12 12 C 1.46276 * 118.71725 * 90.00506 * 11 10 9 13 13 C 1.52556 * 109.56890 * 163.64142 * 12 11 10 14 14 C 1.53400 * 113.80976 * 273.97288 * 13 12 11 15 15 N 1.48055 * 86.02143 * 221.82869 * 14 13 12 16 16 C 1.46902 * 111.00025 * 137.23357 * 15 14 13 17 17 C 1.50693 * 109.47043 * 90.54652 * 16 15 14 18 18 C 1.38425 * 120.44318 * 104.72935 * 17 16 15 19 19 C 1.38784 * 118.48410 * 179.75603 * 18 17 16 20 20 C 1.38085 * 119.28927 * 0.49242 * 19 18 17 21 21 N 1.31934 * 120.83201 * 359.76448 * 20 19 18 22 22 C 1.32278 * 121.65011 * 359.97438 * 21 20 19 23 23 O 1.35677 * 119.68525 * 179.97438 * 22 21 20 24 24 C 1.48058 * 90.84304 * 24.30499 * 15 14 13 25 25 O 1.42687 * 112.47211 * 45.21287 * 13 12 11 26 26 C 1.43043 * 112.95335 * 295.89427 * 25 13 12 27 27 C 1.33720 * 118.71559 * 269.72675 * 11 10 9 28 28 O 1.21279 * 118.38397 * 3.50115 * 27 11 10 29 29 H 0.96998 * 119.99369 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47123 * 60.00582 * 9 7 2 31 31 H 1.08999 * 109.46970 * 299.99863 * 9 7 2 32 32 H 1.09000 * 109.46750 * 60.00410 * 10 9 7 33 33 H 1.09000 * 109.47014 * 300.00461 * 10 9 7 34 34 H 1.08997 * 109.45090 * 283.67325 * 12 11 10 35 35 H 1.09002 * 109.45123 * 43.62848 * 12 11 10 36 36 H 1.09005 * 113.78212 * 336.10482 * 14 13 12 37 37 H 1.09002 * 113.78154 * 107.54771 * 14 13 12 38 38 H 1.09000 * 109.47032 * 210.54753 * 16 15 14 39 39 H 1.09007 * 109.46785 * 330.54679 * 16 15 14 40 40 H 1.08006 * 120.75385 * 359.97438 * 18 17 16 41 41 H 1.07997 * 120.35201 * 180.23296 * 19 18 17 42 42 H 1.08004 * 119.58315 * 179.74953 * 20 19 18 43 43 H 0.96691 * 114.00256 * 270.02332 * 23 22 21 44 44 H 1.08997 * 113.78571 * 221.41642 * 24 15 14 45 45 H 1.08999 * 113.78282 * 89.97071 * 24 15 14 46 46 H 1.08990 * 109.35352 * 167.53591 * 26 25 13 47 47 H 1.08999 * 109.35015 * 287.24077 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 1.1607 -5.5385 -1.2856 13 6 0.7838 -7.0012 -1.0719 14 6 1.9833 -7.9574 -1.0800 15 7 1.1265 -8.8606 -1.8814 16 6 1.8825 -9.4556 -2.9915 17 6 2.4978 -10.7552 -2.5406 18 6 1.9597 -11.9642 -2.9469 19 6 2.5620 -13.1363 -2.5116 20 6 3.6650 -13.0622 -1.6843 21 7 4.1520 -11.8947 -1.3096 22 6 3.6090 -10.7561 -1.7077 23 8 4.1421 -9.5778 -1.2975 24 6 0.3148 -7.7132 -2.3469 25 8 -0.0885 -7.1824 0.0427 26 6 0.5163 -6.8243 1.2885 27 6 1.1967 -5.4908 1.1700 28 8 1.4735 -4.8924 2.1880 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8725 -3.6048 0.8878 33 1 2.8712 -3.6039 -0.8922 34 1 0.3151 -5.0054 -1.7200 35 1 2.0137 -5.4787 -1.9616 36 1 2.8472 -7.5743 -1.6232 37 1 2.2380 -8.3514 -0.0960 38 1 1.2107 -9.6430 -3.8293 39 1 2.6700 -8.7697 -3.3036 40 1 1.0932 -11.9945 -3.5909 41 1 2.1695 -14.0962 -2.8133 42 1 4.1350 -13.9714 -1.3394 43 1 3.7667 -9.2423 -0.4721 44 1 -0.7564 -7.9132 -2.3700 45 1 0.6839 -7.2578 -3.2658 46 1 -0.2512 -6.7708 2.0605 47 1 1.2526 -7.5798 1.5629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272794940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:13 Heat of formation + Delta-G solvation = -25.529950 kcal Electronic energy + Delta-G solvation = -30923.448631 eV Core-core repulsion = 26687.661695 eV Total energy + Delta-G solvation = -4235.786936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66223 -40.72412 -39.26226 -37.41661 -36.78256 -35.48597 -33.79037 -33.05578 -31.54489 -30.34871 -29.56984 -27.73202 -26.82413 -26.62932 -24.56117 -24.02112 -23.77605 -22.08594 -21.45472 -20.27447 -19.21906 -18.47874 -17.57940 -17.24675 -16.92810 -16.72555 -16.30850 -16.00080 -15.75067 -15.59786 -15.15337 -14.93039 -14.74887 -14.46236 -14.32751 -13.78154 -13.56991 -13.47404 -13.27422 -13.06423 -13.01098 -12.87195 -12.57011 -12.26098 -12.11629 -11.95088 -11.72392 -11.57739 -11.34607 -11.08388 -10.90361 -10.71421 -10.33190 -10.17620 -9.91915 -9.86385 -9.78400 -9.42533 -9.28821 -9.11314 -8.99053 -8.36532 -8.15458 -6.01778 -4.05211 0.58805 0.83020 2.83591 3.02890 3.08998 3.29549 3.32840 3.37345 3.40224 3.44327 3.56555 4.07790 4.13242 4.17272 4.36393 4.45018 4.51362 4.53889 4.62170 4.78804 4.87609 4.92798 4.98138 5.04279 5.10446 5.14239 5.27675 5.31437 5.34213 5.34561 5.40360 5.46137 5.60497 5.71141 5.74123 5.86807 6.02659 6.09969 6.45969 6.46994 6.63601 6.79816 6.85251 7.08833 7.55297 7.56046 7.68558 7.88790 7.97931 8.32878 8.47040 9.01043 9.58553 11.09583 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.002237 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.624274 B =12515.829258 C =12617.664864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.113 3.887 11 N -0.596 5.596 12 C 0.100 3.900 13 C 0.074 3.926 14 C -0.026 4.026 15 N -0.464 5.464 16 C 0.062 3.938 17 C -0.135 4.135 18 C -0.049 4.049 19 C -0.183 4.183 20 C 0.119 3.881 21 N -0.504 5.504 22 C 0.319 3.681 23 O -0.483 6.483 24 C 0.027 3.973 25 O -0.335 6.335 26 C 0.052 3.948 27 C 0.479 3.521 28 O -0.536 6.536 29 H 0.261 0.739 30 H 0.015 0.985 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.398 0.602 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -27.519 -8.923 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.007 4.007 11 N -0.329 5.329 12 C -0.025 4.025 13 C 0.033 3.967 14 C -0.155 4.155 15 N -0.186 5.186 16 C -0.066 4.066 17 C -0.138 4.138 18 C -0.075 4.075 19 C -0.203 4.203 20 C -0.038 4.038 21 N -0.222 5.222 22 C 0.140 3.860 23 O -0.293 6.293 24 C -0.101 4.101 25 O -0.253 6.253 26 C -0.027 4.027 27 C 0.265 3.735 28 O -0.414 6.414 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.177 0.823 43 H 0.258 0.742 44 H 0.127 0.873 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.508 -27.674 -8.057 28.931 hybrid contribution 0.124 1.649 -0.557 1.745 sum 2.632 -26.025 -8.614 27.539 Atomic orbital electron populations 1.69969 1.06089 1.26780 1.50326 1.25007 0.94862 0.99295 0.95149 0.86611 0.79538 0.82930 0.78643 1.20220 1.21273 1.20146 1.21043 0.92952 0.90715 1.51330 0.92596 1.19342 0.94335 0.90950 0.97657 1.21968 0.95508 0.81666 1.01553 1.47671 1.56359 1.24209 1.04622 1.21976 1.01903 0.91570 0.87022 1.22885 0.91258 0.93012 0.89566 1.24818 0.96480 0.93682 1.00534 1.68681 1.14181 1.20575 1.15202 1.21525 0.97419 0.93214 0.94459 1.20682 0.95474 0.96388 1.01304 1.21443 0.98152 0.91005 0.96915 1.22151 0.98366 0.99541 1.00277 1.22533 0.93088 0.94563 0.93603 1.67194 1.31712 0.98556 1.24778 1.19015 0.88603 0.85164 0.93214 1.84792 1.66459 1.32583 1.45458 1.23974 1.01863 0.89539 0.94745 1.88113 1.37183 1.86464 1.13494 1.22807 0.99608 0.92818 0.87511 1.20664 0.80514 0.88282 0.84034 1.90771 1.53932 1.62357 1.34354 0.92892 0.96703 0.95909 0.90604 0.91775 0.89977 0.89653 0.88547 0.89203 0.89341 0.91504 0.84306 0.84319 0.82335 0.74204 0.87347 0.88981 0.85229 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.39 5.29 -27.88 -0.15 0.25 16 10 C 0.11 2.36 5.21 -4.04 -0.02 2.33 16 11 N -0.60 -10.27 2.83 -174.67 -0.50 -10.77 16 12 C 0.10 1.27 5.89 -4.39 -0.03 1.25 16 13 C 0.07 0.78 1.16 -90.52 -0.10 0.68 16 14 C -0.03 -0.23 4.78 -2.99 -0.01 -0.25 16 15 N -0.46 -3.91 6.14 -242.41 -1.49 -5.40 16 16 C 0.06 0.45 4.77 -4.98 -0.02 0.43 16 17 C -0.13 -1.14 5.49 -104.32 -0.57 -1.72 16 18 C -0.05 -0.33 9.80 -39.31 -0.39 -0.72 16 19 C -0.18 -1.12 10.11 -39.44 -0.40 -1.52 16 20 C 0.12 0.92 11.18 -17.56 -0.20 0.72 16 21 N -0.50 -5.47 10.39 -13.33 -0.14 -5.61 16 22 C 0.32 3.31 7.66 -17.12 -0.13 3.18 16 23 O -0.48 -4.87 11.30 -18.73 -0.21 -5.08 16 24 C 0.03 0.22 7.36 -2.99 -0.02 0.20 16 25 O -0.33 -4.29 10.66 -35.23 -0.38 -4.66 16 26 C 0.05 0.68 6.66 35.75 0.24 0.91 16 27 C 0.48 8.51 7.57 -11.71 -0.09 8.42 16 28 O -0.54 -11.96 16.33 5.56 0.09 -11.87 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.69 7.29 -51.93 -0.38 1.31 16 33 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 0.91 7.76 -51.93 -0.40 0.51 16 36 H 0.10 0.78 6.64 -51.93 -0.34 0.44 16 37 H 0.09 0.77 5.74 -51.93 -0.30 0.47 16 38 H 0.09 0.50 7.94 -51.93 -0.41 0.09 16 39 H 0.07 0.50 7.26 -51.93 -0.38 0.12 16 40 H 0.14 0.62 8.05 -52.48 -0.42 0.20 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.40 3.06 6.33 45.56 0.29 3.34 16 44 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.55 7.88 -51.93 -0.41 0.14 16 46 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 47 H 0.08 0.89 7.15 -51.93 -0.37 0.52 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -36.93 382.14 -9.49 -46.42 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.04 Total: 0.21 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.30 Total: 0.64 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -1.39 Total: -48.18 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.50 Total: -21.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.93 -9.49 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272794940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -36.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds