Wall clock time and date at job start Wed Apr 1 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48499 * 109.46993 * 240.00036 * 3 2 1 5 5 H 1.48495 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46532 * 120.00237 * 3 2 1 7 7 C 1.37878 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99884 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46823 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.46742 * 180.02562 * 10 9 7 12 12 C 1.46276 * 118.71725 * 90.00506 * 11 10 9 13 13 C 1.52556 * 109.56890 * 163.64142 * 12 11 10 14 14 C 1.53400 * 113.80976 * 273.97288 * 13 12 11 15 15 N 1.48055 * 86.02143 * 221.82869 * 14 13 12 16 16 C 1.46902 * 111.00025 * 137.23357 * 15 14 13 17 17 C 1.50693 * 109.47043 * 90.54652 * 16 15 14 18 18 C 1.38425 * 120.44318 * 104.72935 * 17 16 15 19 19 C 1.38784 * 118.48410 * 179.75603 * 18 17 16 20 20 C 1.38085 * 119.28927 * 0.49242 * 19 18 17 21 21 N 1.31934 * 120.83201 * 359.76448 * 20 19 18 22 22 C 1.32278 * 121.65011 * 359.97438 * 21 20 19 23 23 O 1.35677 * 119.68525 * 179.97438 * 22 21 20 24 24 C 1.48058 * 90.84304 * 24.30499 * 15 14 13 25 25 O 1.42687 * 112.47211 * 45.21287 * 13 12 11 26 26 C 1.43043 * 112.95335 * 295.89427 * 25 13 12 27 27 C 1.33720 * 118.71559 * 269.72675 * 11 10 9 28 28 O 1.21279 * 118.38397 * 3.50115 * 27 11 10 29 29 H 0.96998 * 119.99369 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47123 * 60.00582 * 9 7 2 31 31 H 1.08999 * 109.46970 * 299.99863 * 9 7 2 32 32 H 1.09000 * 109.46750 * 60.00410 * 10 9 7 33 33 H 1.09000 * 109.47014 * 300.00461 * 10 9 7 34 34 H 1.08997 * 109.45090 * 283.67325 * 12 11 10 35 35 H 1.09002 * 109.45123 * 43.62848 * 12 11 10 36 36 H 1.09005 * 113.78212 * 336.10482 * 14 13 12 37 37 H 1.09002 * 113.78154 * 107.54771 * 14 13 12 38 38 H 1.09000 * 109.47032 * 210.54753 * 16 15 14 39 39 H 1.09007 * 109.46785 * 330.54679 * 16 15 14 40 40 H 1.08006 * 120.75385 * 359.97438 * 18 17 16 41 41 H 1.07997 * 120.35201 * 180.23296 * 19 18 17 42 42 H 1.08004 * 119.58315 * 179.74953 * 20 19 18 43 43 H 0.96691 * 114.00256 * 270.02332 * 23 22 21 44 44 H 1.08997 * 113.78571 * 221.41642 * 24 15 14 45 45 H 1.08999 * 113.78282 * 89.97071 * 24 15 14 46 46 H 1.08990 * 109.35352 * 167.53591 * 26 25 13 47 47 H 1.08999 * 109.35015 * 287.24077 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 1.1607 -5.5385 -1.2856 13 6 0.7838 -7.0012 -1.0719 14 6 1.9833 -7.9574 -1.0800 15 7 1.1265 -8.8606 -1.8814 16 6 1.8825 -9.4556 -2.9915 17 6 2.4978 -10.7552 -2.5406 18 6 1.9597 -11.9642 -2.9469 19 6 2.5620 -13.1363 -2.5116 20 6 3.6650 -13.0622 -1.6843 21 7 4.1520 -11.8947 -1.3096 22 6 3.6090 -10.7561 -1.7077 23 8 4.1421 -9.5778 -1.2975 24 6 0.3148 -7.7132 -2.3469 25 8 -0.0885 -7.1824 0.0427 26 6 0.5163 -6.8243 1.2885 27 6 1.1967 -5.4908 1.1700 28 8 1.4735 -4.8924 2.1880 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8725 -3.6048 0.8878 33 1 2.8712 -3.6039 -0.8922 34 1 0.3151 -5.0054 -1.7200 35 1 2.0137 -5.4787 -1.9616 36 1 2.8472 -7.5743 -1.6232 37 1 2.2380 -8.3514 -0.0960 38 1 1.2107 -9.6430 -3.8293 39 1 2.6700 -8.7697 -3.3036 40 1 1.0932 -11.9945 -3.5909 41 1 2.1695 -14.0962 -2.8133 42 1 4.1350 -13.9714 -1.3394 43 1 3.7667 -9.2423 -0.4721 44 1 -0.7564 -7.9132 -2.3700 45 1 0.6839 -7.2578 -3.2658 46 1 -0.2512 -6.7708 2.0605 47 1 1.2526 -7.5798 1.5629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272794940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:12 Heat of formation + Delta-G solvation = -57.554487 kcal Electronic energy + Delta-G solvation = -30924.837319 eV Core-core repulsion = 26687.661695 eV Total energy + Delta-G solvation = -4237.175624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.51461 -41.45705 -40.40035 -38.10395 -37.73161 -37.01673 -35.14374 -34.38492 -32.33018 -31.91798 -30.53592 -28.89859 -27.83937 -27.33901 -26.35152 -24.80860 -24.35187 -23.46916 -22.49037 -21.32938 -19.98207 -19.53724 -18.76546 -18.57408 -17.86482 -17.65109 -17.40211 -17.17865 -16.68643 -16.47848 -16.43783 -16.00770 -15.81643 -15.52641 -15.28280 -14.90217 -14.59263 -14.55491 -14.26955 -14.14013 -14.02745 -13.88685 -13.74683 -13.53135 -13.29544 -12.86689 -12.81977 -12.67733 -12.57627 -12.51164 -12.38550 -12.01841 -11.91403 -11.72364 -11.49346 -11.18992 -10.78682 -10.59715 -10.44068 -10.37387 -9.94038 -9.68898 -9.64960 -8.23818 -6.36559 0.03796 0.30057 1.38076 1.42636 1.45230 1.50396 1.84092 2.36891 2.40705 2.48852 2.79998 2.95010 3.09496 3.19955 3.30165 3.58252 3.62237 3.85127 3.97940 4.03331 4.07946 4.10252 4.23151 4.25407 4.33873 4.39884 4.43666 4.51070 4.52568 4.57516 4.62342 4.66844 4.70982 4.79088 4.81853 4.91286 5.09541 5.15287 5.22629 5.32770 5.42464 5.55296 5.63138 5.75903 5.81110 5.90203 6.14803 6.41882 6.48136 6.78623 6.98594 7.04988 7.32966 8.88161 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.002237 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.624274 B =12515.829258 C =12617.664864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.026 3.974 10 C 0.129 3.871 11 N -0.597 5.597 12 C 0.094 3.906 13 C 0.065 3.935 14 C -0.018 4.018 15 N -0.470 5.470 16 C 0.066 3.934 17 C -0.143 4.143 18 C -0.052 4.052 19 C -0.174 4.174 20 C 0.104 3.896 21 N -0.543 5.543 22 C 0.292 3.708 23 O -0.495 6.495 24 C 0.037 3.963 25 O -0.343 6.343 26 C 0.064 3.936 27 C 0.470 3.530 28 O -0.592 6.592 29 H 0.264 0.736 30 H -0.002 1.002 31 H -0.028 1.028 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.180 0.820 43 H 0.402 0.598 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.137 0.863 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -29.243 -11.051 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.012 4.012 10 C 0.007 3.993 11 N -0.328 5.328 12 C -0.029 4.029 13 C 0.024 3.976 14 C -0.147 4.147 15 N -0.192 5.192 16 C -0.062 4.062 17 C -0.146 4.146 18 C -0.078 4.078 19 C -0.194 4.194 20 C -0.052 4.052 21 N -0.262 5.262 22 C 0.113 3.887 23 O -0.306 6.306 24 C -0.091 4.091 25 O -0.261 6.261 26 C -0.015 4.015 27 C 0.259 3.741 28 O -0.474 6.474 29 H 0.073 0.927 30 H 0.017 0.983 31 H -0.009 1.009 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.183 0.817 41 H 0.189 0.811 42 H 0.197 0.803 43 H 0.263 0.737 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.154 0.846 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.936 -29.439 -10.230 31.304 hybrid contribution -0.053 2.094 0.072 2.096 sum 2.883 -27.344 -10.157 29.312 Atomic orbital electron populations 1.70119 1.07983 1.27938 1.51245 1.26038 0.95800 1.03629 0.94460 0.85423 0.78194 0.77620 0.79335 1.18305 1.20861 1.19605 1.21517 0.93695 0.91828 1.51163 0.91581 1.19145 0.94522 0.93179 0.94305 1.21520 0.94252 0.81671 1.01905 1.47714 1.55609 1.22984 1.06490 1.22303 1.02611 0.92786 0.85155 1.23109 0.92546 0.91735 0.90201 1.24781 0.95947 0.92960 1.00983 1.68670 1.14224 1.20531 1.15789 1.21551 0.97610 0.92597 0.94471 1.20841 0.95066 0.97619 1.01118 1.21851 0.98676 0.90525 0.96739 1.22521 0.97224 1.00895 0.98747 1.23031 0.93828 0.94412 0.93936 1.67148 1.33111 0.99650 1.26271 1.19282 0.89817 0.85024 0.94547 1.84764 1.66997 1.32925 1.45878 1.24064 1.02130 0.88761 0.94127 1.88112 1.38120 1.86102 1.13783 1.22747 1.00105 0.90401 0.88209 1.21630 0.79666 0.89602 0.83234 1.90736 1.56231 1.64203 1.36235 0.92728 0.98340 1.00947 0.92536 0.88950 0.91060 0.86945 0.87787 0.89148 0.87232 0.91659 0.81656 0.81093 0.80271 0.73705 0.87140 0.86531 0.84552 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.03 1.45 5.29 29.85 0.16 1.61 16 10 C 0.13 5.46 5.21 86.38 0.45 5.91 16 11 N -0.60 -20.87 2.83 -825.52 -2.34 -23.21 16 12 C 0.09 2.31 5.89 86.27 0.51 2.82 16 13 C 0.07 1.27 1.16 -10.65 -0.01 1.25 16 14 C -0.02 -0.28 4.78 86.21 0.41 0.13 16 15 N -0.47 -6.67 6.14 -925.14 -5.68 -12.36 16 16 C 0.07 0.77 4.77 85.55 0.41 1.18 16 17 C -0.14 -2.12 5.49 -19.67 -0.11 -2.23 16 18 C -0.05 -0.54 9.80 22.45 0.22 -0.32 16 19 C -0.17 -1.63 10.11 22.36 0.23 -1.40 16 20 C 0.10 1.45 11.18 84.64 0.95 2.39 16 21 N -0.54 -11.49 10.39 -308.94 -3.21 -14.70 16 22 C 0.29 5.81 7.66 84.78 0.65 6.46 16 23 O -0.50 -9.78 11.30 -89.95 -1.02 -10.79 16 24 C 0.04 0.50 7.36 86.20 0.63 1.13 16 25 O -0.34 -8.37 10.66 -148.98 -1.59 -9.96 16 26 C 0.06 1.65 6.66 71.07 0.47 2.12 16 27 C 0.47 17.17 7.57 87.66 0.66 17.83 16 28 O -0.59 -27.80 16.33 -3.03 -0.05 -27.85 16 29 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 30 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 32 H 0.06 2.62 7.29 -2.39 -0.02 2.60 16 33 H 0.09 3.37 7.96 -2.39 -0.02 3.35 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 2.14 7.76 -2.39 -0.02 2.12 16 36 H 0.10 1.47 6.64 -2.38 -0.02 1.46 16 37 H 0.09 1.40 5.74 -2.39 -0.01 1.39 16 38 H 0.11 0.81 7.94 -2.39 -0.02 0.79 16 39 H 0.07 0.80 7.26 -2.38 -0.02 0.78 16 40 H 0.17 0.77 8.05 -2.91 -0.02 0.75 16 41 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16 42 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.40 6.10 6.33 -74.06 -0.47 5.63 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.12 0.98 7.88 -2.39 -0.02 0.96 16 46 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.11 2.25 7.15 -2.39 -0.02 2.23 16 Total: -1.00 -84.45 382.14 -4.72 -89.16 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.53 Total: 12.76 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.32 Total: 8.00 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -10.95 Total: -108.22 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -2.65 Total: -48.60 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -84.45 -4.72 -89.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272794940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.610 kcal (2) G-P(sol) polarization free energy of solvation -84.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds