Wall clock time and date at job start Wed Apr 1 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47005 * 299.99310 * 3 2 1 6 6 H 1.48489 * 109.47564 * 59.99576 * 3 2 1 7 7 C 1.38813 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00175 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99750 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49296 * 180.02562 * 9 7 2 11 11 C 1.53942 * 86.12174 * 155.35490 * 10 9 7 12 12 O 1.42899 * 113.74269 * 269.15639 * 11 10 9 13 13 C 1.52992 * 113.74274 * 137.94722 * 11 10 9 14 14 N 1.46506 * 109.47161 * 186.92474 * 13 11 10 15 15 C 1.34773 * 119.99968 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00360 * 359.73034 * 15 14 13 17 17 C 1.50706 * 120.00081 * 180.02562 * 15 14 13 18 18 H 1.08999 * 110.43524 * 57.17747 * 17 15 14 19 19 C 1.54809 * 110.48527 * 294.49348 * 17 15 14 20 20 C 1.54993 * 102.09581 * 262.20134 * 19 17 15 21 21 O 1.44385 * 103.48751 * 322.98171 * 20 19 17 22 22 C 1.43739 * 106.97576 * 40.05681 * 21 20 19 23 23 H 1.09003 * 110.00303 * 92.98708 * 22 21 20 24 24 C 1.50702 * 109.87572 * 214.06434 * 22 21 20 25 25 C 1.38648 * 120.79220 * 37.54935 * 24 22 21 26 26 C 1.38205 * 119.16341 * 179.75124 * 25 24 22 27 27 N 1.31878 * 120.76232 * 0.54180 * 26 25 24 28 28 C 1.31867 * 121.72490 * 359.73039 * 27 26 25 29 29 C 1.38208 * 120.76542 * 359.97438 * 28 27 26 30 30 C 1.47814 * 134.45632 * 359.86347 * 9 7 2 31 31 H 0.97001 * 119.99888 * 0.02562 * 1 2 3 32 32 H 1.09003 * 113.77369 * 41.05294 * 10 9 7 33 33 H 1.09003 * 113.86713 * 269.67257 * 10 9 7 34 34 H 0.96695 * 114.00213 * 178.07223 * 12 11 10 35 35 H 1.09004 * 109.47116 * 66.93109 * 13 11 10 36 36 H 1.08998 * 109.47794 * 306.93021 * 13 11 10 37 37 H 0.96998 * 119.99507 * 0.02562 * 14 13 11 38 38 H 1.09002 * 110.90730 * 20.40337 * 19 17 15 39 39 H 1.09000 * 110.90599 * 144.00186 * 19 17 15 40 40 H 1.08995 * 110.62143 * 204.47991 * 20 19 17 41 41 H 1.09000 * 110.61629 * 81.47657 * 20 19 17 42 42 H 1.07998 * 120.41934 * 0.02562 * 25 24 22 43 43 H 1.07997 * 119.61951 * 180.25007 * 26 25 24 44 44 H 1.07998 * 119.61577 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.41444 * 179.97438 * 29 28 27 46 46 H 1.09000 * 113.76571 * 90.38184 * 30 9 7 47 47 H 1.09001 * 113.83732 * 318.91939 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7201 -3.8101 0.0015 11 6 0.3466 -4.0827 0.6410 12 8 0.3619 -4.0571 2.0697 13 6 -0.3635 -5.3135 0.0740 14 7 -1.7195 -5.3912 0.6232 15 6 -2.5360 -6.4007 0.2620 16 8 -2.1501 -7.2422 -0.5216 17 6 -3.9311 -6.4803 0.8264 18 1 -4.4841 -5.5676 0.6046 19 6 -3.8842 -6.7312 2.3534 20 6 -4.0937 -8.2646 2.4371 21 8 -5.0425 -8.5330 1.3823 22 6 -4.6711 -7.7095 0.2643 23 1 -4.0134 -8.2641 -0.4051 24 6 -5.9053 -7.2686 -0.4796 25 6 -7.0683 -6.9462 0.2030 26 6 -8.1789 -6.5409 -0.5127 27 7 -8.1439 -6.4695 -1.8291 28 6 -7.0573 -6.7737 -2.5114 29 6 -5.9065 -7.1811 -1.8634 30 6 -0.1057 -2.7570 0.0026 31 1 -0.4850 0.8401 -0.0004 32 1 2.5620 -4.0321 0.6574 33 1 1.8333 -4.2371 -0.9950 34 1 -0.5046 -4.1987 2.4749 35 1 0.1912 -6.2111 0.3475 36 1 -0.4152 -5.2352 -1.0119 37 1 -2.0298 -4.7156 1.2463 38 1 -2.9153 -6.4479 2.7645 39 1 -4.6904 -6.2002 2.8597 40 1 -4.5080 -8.5431 3.4060 41 1 -3.1568 -8.7906 2.2536 42 1 -7.1044 -7.0068 1.2806 43 1 -9.0874 -6.2841 0.0118 44 1 -7.0667 -6.7035 -3.5891 45 1 -5.0199 -7.4293 -2.4279 46 1 -0.5311 -2.8722 -0.9944 47 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278868305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:58 Heat of formation + Delta-G solvation = -27.685458 kcal Electronic energy + Delta-G solvation = -30575.114048 eV Core-core repulsion = 26339.233641 eV Total energy + Delta-G solvation = -4235.880406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.21813 -40.05489 -39.17864 -38.26846 -35.01990 -34.21619 -33.59125 -32.66869 -31.99642 -31.43129 -29.18004 -28.54048 -26.25709 -25.10622 -24.43194 -23.75903 -22.79098 -22.14938 -21.59332 -20.35058 -19.42221 -18.22817 -17.60470 -16.86795 -16.64772 -16.40004 -15.99889 -15.96041 -15.70085 -15.33045 -14.98691 -14.92589 -14.69275 -14.14779 -14.06290 -13.95799 -13.82627 -13.61317 -13.39897 -13.17082 -12.81717 -12.35882 -12.31782 -12.25338 -11.95989 -11.80967 -11.68295 -11.47441 -11.13208 -10.99913 -10.82171 -10.50450 -10.30458 -10.15341 -9.89506 -9.70986 -9.66204 -9.55360 -9.38408 -9.35244 -9.08569 -8.88795 -6.96555 -5.83377 -3.15143 0.90101 0.92492 2.39378 2.90373 3.33732 3.35651 3.41109 3.43503 3.68757 3.98291 4.11744 4.23970 4.36139 4.37934 4.42860 4.51473 4.60187 4.70400 4.84303 4.90561 4.92341 4.94797 5.04884 5.12595 5.19017 5.29716 5.32656 5.39711 5.46064 5.50106 5.52095 5.59804 5.63329 5.72473 5.91587 6.05141 6.19210 6.29423 6.42389 6.44332 6.45190 6.47765 6.92202 7.08256 7.28413 7.42998 7.72806 7.89508 7.97341 8.05159 8.97539 9.64151 10.49074 11.34080 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.002433 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.624782 B =11504.152512 C =12551.652584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.137 3.863 11 C 0.063 3.937 12 O -0.525 6.525 13 C 0.102 3.898 14 N -0.719 5.719 15 C 0.523 3.477 16 O -0.536 6.536 17 C -0.139 4.139 18 H 0.115 0.885 19 C -0.146 4.146 20 C 0.046 3.954 21 O -0.363 6.363 22 C 0.126 3.874 23 H 0.109 0.891 24 C -0.044 4.044 25 C -0.149 4.149 26 C 0.094 3.906 27 N -0.485 5.485 28 C 0.098 3.902 29 C -0.158 4.158 30 C 0.144 3.856 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.361 0.639 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.400 0.600 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.139 0.861 46 H 0.034 0.966 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.694 -16.687 3.887 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.010 3.990 11 C 0.020 3.980 12 O -0.329 6.329 13 C -0.023 4.023 14 N -0.370 5.370 15 C 0.308 3.692 16 O -0.414 6.414 17 C -0.161 4.161 18 H 0.133 0.867 19 C -0.183 4.183 20 C -0.030 4.030 21 O -0.282 6.282 22 C 0.068 3.932 23 H 0.126 0.874 24 C -0.052 4.052 25 C -0.169 4.169 26 C -0.063 4.063 27 N -0.194 5.194 28 C -0.058 4.058 29 C -0.178 4.178 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.206 0.794 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.175 0.825 45 H 0.157 0.843 46 H 0.052 0.948 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.609 -16.689 2.770 21.712 hybrid contribution 0.649 1.161 0.695 1.501 sum -12.960 -15.528 3.465 20.520 Atomic orbital electron populations 1.69803 1.05043 1.25249 1.56938 1.24770 0.95723 0.97566 1.02390 0.86015 0.78771 0.83534 0.77255 1.20413 1.21729 1.21671 1.19048 0.90332 0.81684 1.43555 0.90027 1.45709 1.01895 0.99168 1.86023 1.22541 0.93299 0.86661 0.96510 1.23769 0.99271 0.93290 0.81626 1.86633 1.33436 1.95166 1.17620 1.22103 0.81079 0.99510 0.99560 1.45904 1.15032 1.27868 1.48224 1.20134 0.86448 0.81270 0.81314 1.90692 1.75976 1.39872 1.34823 1.22701 0.94729 1.01556 0.97145 0.86663 1.23203 1.04417 0.97740 0.92986 1.23617 0.93596 0.94007 0.91812 1.88914 1.52157 1.63245 1.23912 1.21594 0.92166 0.90166 0.89240 0.87366 1.20183 0.95025 0.96260 0.93761 1.21990 0.93353 0.99681 1.01851 1.22789 0.98070 0.95470 0.89942 1.67675 1.28600 1.14036 1.09132 1.22763 0.88061 0.94509 1.00513 1.22071 1.00442 1.01030 0.94224 1.22928 0.88980 0.89075 0.97184 0.93721 0.92628 0.93232 0.79359 0.90978 0.90141 0.76489 0.89094 0.88933 0.88183 0.91556 0.84454 0.82687 0.82506 0.84346 0.94832 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 11.39 55.49 0.63 -26.14 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.14 3.70 -177.59 -0.66 -15.79 16 10 C 0.14 2.72 8.34 -2.97 -0.02 2.69 16 11 C 0.06 1.09 1.49 -89.71 -0.13 0.95 16 12 O -0.53 -8.91 13.50 -35.23 -0.48 -9.39 16 13 C 0.10 1.42 5.26 -4.04 -0.02 1.40 16 14 N -0.72 -8.13 5.19 -60.29 -0.31 -8.45 16 15 C 0.52 6.13 7.05 -10.98 -0.08 6.05 16 16 O -0.54 -8.07 15.25 5.56 0.08 -7.99 16 17 C -0.14 -1.25 3.06 -90.24 -0.28 -1.52 16 18 H 0.12 0.96 7.69 -51.93 -0.40 0.56 16 19 C -0.15 -0.96 6.70 -24.73 -0.17 -1.12 16 20 C 0.05 0.34 7.72 38.21 0.29 0.64 16 21 O -0.36 -3.66 10.54 -35.23 -0.37 -4.03 16 22 C 0.13 1.28 3.29 -27.31 -0.09 1.19 16 23 H 0.11 1.29 6.36 -51.93 -0.33 0.96 16 24 C -0.04 -0.44 4.80 -104.32 -0.50 -0.94 16 25 C -0.15 -1.36 9.46 -39.44 -0.37 -1.73 16 26 C 0.09 0.88 11.18 -17.54 -0.20 0.68 16 27 N -0.49 -5.38 10.36 -13.25 -0.14 -5.52 16 28 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 29 C -0.16 -1.57 9.79 -39.44 -0.39 -1.95 16 30 C 0.14 3.16 6.92 -2.84 -0.02 3.14 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.36 4.38 7.73 45.56 0.35 4.73 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 37 H 0.40 3.78 7.42 -40.82 -0.30 3.47 16 38 H 0.09 0.53 7.75 -51.93 -0.40 0.13 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.14 1.04 7.80 -52.49 -0.41 0.63 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 46 H 0.03 0.75 8.06 -51.93 -0.42 0.34 16 47 H 0.08 1.89 7.16 -51.93 -0.37 1.52 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -35.39 390.43 -8.85 -44.24 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.05 Total: 6.55 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.42 Total: 3.66 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.48 Total: -55.89 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.76 Total: -21.41 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.39 -8.85 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278868305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.552 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds