Wall clock time and date at job start Wed Apr 1 2020 05:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47005 * 299.99310 * 3 2 1 6 6 H 1.48489 * 109.47564 * 59.99576 * 3 2 1 7 7 C 1.38813 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00175 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99750 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49296 * 180.02562 * 9 7 2 11 11 C 1.53942 * 86.12174 * 155.35490 * 10 9 7 12 12 O 1.42899 * 113.74269 * 269.15639 * 11 10 9 13 13 C 1.52992 * 113.74274 * 137.94722 * 11 10 9 14 14 N 1.46506 * 109.47161 * 186.92474 * 13 11 10 15 15 C 1.34773 * 119.99968 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00360 * 359.73034 * 15 14 13 17 17 C 1.50706 * 120.00081 * 180.02562 * 15 14 13 18 18 H 1.08999 * 110.43524 * 57.17747 * 17 15 14 19 19 C 1.54809 * 110.48527 * 294.49348 * 17 15 14 20 20 C 1.54993 * 102.09581 * 262.20134 * 19 17 15 21 21 O 1.44385 * 103.48751 * 322.98171 * 20 19 17 22 22 C 1.43739 * 106.97576 * 40.05681 * 21 20 19 23 23 H 1.09003 * 110.00303 * 92.98708 * 22 21 20 24 24 C 1.50702 * 109.87572 * 214.06434 * 22 21 20 25 25 C 1.38648 * 120.79220 * 37.54935 * 24 22 21 26 26 C 1.38205 * 119.16341 * 179.75124 * 25 24 22 27 27 N 1.31878 * 120.76232 * 0.54180 * 26 25 24 28 28 C 1.31867 * 121.72490 * 359.73039 * 27 26 25 29 29 C 1.38208 * 120.76542 * 359.97438 * 28 27 26 30 30 C 1.47814 * 134.45632 * 359.86347 * 9 7 2 31 31 H 0.97001 * 119.99888 * 0.02562 * 1 2 3 32 32 H 1.09003 * 113.77369 * 41.05294 * 10 9 7 33 33 H 1.09003 * 113.86713 * 269.67257 * 10 9 7 34 34 H 0.96695 * 114.00213 * 178.07223 * 12 11 10 35 35 H 1.09004 * 109.47116 * 66.93109 * 13 11 10 36 36 H 1.08998 * 109.47794 * 306.93021 * 13 11 10 37 37 H 0.96998 * 119.99507 * 0.02562 * 14 13 11 38 38 H 1.09002 * 110.90730 * 20.40337 * 19 17 15 39 39 H 1.09000 * 110.90599 * 144.00186 * 19 17 15 40 40 H 1.08995 * 110.62143 * 204.47991 * 20 19 17 41 41 H 1.09000 * 110.61629 * 81.47657 * 20 19 17 42 42 H 1.07998 * 120.41934 * 0.02562 * 25 24 22 43 43 H 1.07997 * 119.61951 * 180.25007 * 26 25 24 44 44 H 1.07998 * 119.61577 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.41444 * 179.97438 * 29 28 27 46 46 H 1.09000 * 113.76571 * 90.38184 * 30 9 7 47 47 H 1.09001 * 113.83732 * 318.91939 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7201 -3.8101 0.0015 11 6 0.3466 -4.0827 0.6410 12 8 0.3619 -4.0571 2.0697 13 6 -0.3635 -5.3135 0.0740 14 7 -1.7195 -5.3912 0.6232 15 6 -2.5360 -6.4007 0.2620 16 8 -2.1501 -7.2422 -0.5216 17 6 -3.9311 -6.4803 0.8264 18 1 -4.4841 -5.5676 0.6046 19 6 -3.8842 -6.7312 2.3534 20 6 -4.0937 -8.2646 2.4371 21 8 -5.0425 -8.5330 1.3823 22 6 -4.6711 -7.7095 0.2643 23 1 -4.0134 -8.2641 -0.4051 24 6 -5.9053 -7.2686 -0.4796 25 6 -7.0683 -6.9462 0.2030 26 6 -8.1789 -6.5409 -0.5127 27 7 -8.1439 -6.4695 -1.8291 28 6 -7.0573 -6.7737 -2.5114 29 6 -5.9065 -7.1811 -1.8634 30 6 -0.1057 -2.7570 0.0026 31 1 -0.4850 0.8401 -0.0004 32 1 2.5620 -4.0321 0.6574 33 1 1.8333 -4.2371 -0.9950 34 1 -0.5046 -4.1987 2.4749 35 1 0.1912 -6.2111 0.3475 36 1 -0.4152 -5.2352 -1.0119 37 1 -2.0298 -4.7156 1.2463 38 1 -2.9153 -6.4479 2.7645 39 1 -4.6904 -6.2002 2.8597 40 1 -4.5080 -8.5431 3.4060 41 1 -3.1568 -8.7906 2.2536 42 1 -7.1044 -7.0068 1.2806 43 1 -9.0874 -6.2841 0.0118 44 1 -7.0667 -6.7035 -3.5891 45 1 -5.0199 -7.4293 -2.4279 46 1 -0.5311 -2.8722 -0.9944 47 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278868305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:57 Heat of formation + Delta-G solvation = -55.284283 kcal Electronic energy + Delta-G solvation = -30576.310822 eV Core-core repulsion = 26339.233641 eV Total energy + Delta-G solvation = -4237.077181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02161 -41.00228 -40.39710 -39.26871 -36.50922 -35.38684 -34.33016 -34.04553 -33.32608 -32.13571 -30.29828 -29.67940 -27.82689 -26.76655 -25.34347 -24.49223 -23.83808 -23.27324 -22.52664 -21.30467 -20.91363 -19.21133 -18.71810 -18.30669 -17.56953 -17.39485 -17.21497 -16.81517 -16.69562 -16.45308 -16.07214 -15.88890 -15.77580 -15.59930 -15.29787 -14.94114 -14.82618 -14.56121 -14.48542 -14.42416 -13.99996 -13.88535 -13.46071 -13.10312 -12.98857 -12.88644 -12.85315 -12.59879 -12.55702 -12.29546 -12.18946 -12.13178 -11.78530 -11.45258 -11.07514 -10.99154 -10.91518 -10.73708 -10.45440 -10.43740 -10.21252 -10.09304 -8.94719 -7.92936 -5.25162 0.17034 0.20132 1.45000 1.45399 1.46891 1.55631 1.94612 2.45004 2.64713 2.96679 3.04638 3.26772 3.31649 3.32985 3.39562 3.52754 3.59427 3.67742 3.87453 3.89135 3.96999 4.00219 4.20026 4.21759 4.30491 4.34831 4.39052 4.66437 4.68027 4.72569 4.74051 4.77364 4.81946 4.84650 4.90784 4.94665 5.00926 5.02242 5.15785 5.24587 5.31714 5.34879 5.48393 5.74943 5.77080 5.90701 6.36112 6.83177 6.90334 7.00636 7.07560 7.57852 8.50738 9.23802 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.002433 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.624782 B =11504.152512 C =12551.652584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.637 5.637 10 C 0.128 3.872 11 C 0.101 3.899 12 O -0.539 6.539 13 C 0.118 3.882 14 N -0.711 5.711 15 C 0.525 3.475 16 O -0.571 6.571 17 C -0.132 4.132 18 H 0.125 0.875 19 C -0.137 4.137 20 C 0.040 3.960 21 O -0.376 6.376 22 C 0.130 3.870 23 H 0.085 0.915 24 C -0.055 4.055 25 C -0.147 4.147 26 C 0.088 3.912 27 N -0.510 5.510 28 C 0.089 3.911 29 C -0.169 4.169 30 C 0.143 3.857 31 H 0.248 0.752 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.383 0.617 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.056 0.944 42 H 0.156 0.844 43 H 0.181 0.819 44 H 0.174 0.826 45 H 0.140 0.860 46 H 0.025 0.975 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -17.157 5.348 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.363 5.363 10 C 0.003 3.997 11 C 0.058 3.942 12 O -0.345 6.345 13 C -0.007 4.007 14 N -0.363 5.363 15 C 0.312 3.688 16 O -0.451 6.451 17 C -0.154 4.154 18 H 0.143 0.857 19 C -0.175 4.175 20 C -0.036 4.036 21 O -0.295 6.295 22 C 0.072 3.928 23 H 0.102 0.898 24 C -0.063 4.063 25 C -0.166 4.166 26 C -0.068 4.068 27 N -0.220 5.220 28 C -0.067 4.067 29 C -0.189 4.189 30 C 0.017 3.983 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.248 0.752 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.075 0.925 42 H 0.174 0.826 43 H 0.198 0.802 44 H 0.191 0.809 45 H 0.158 0.842 46 H 0.043 0.957 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.074 -17.188 4.257 22.619 hybrid contribution 0.801 1.223 0.257 1.484 sum -13.274 -15.965 4.514 21.247 Atomic orbital electron populations 1.69969 1.06231 1.25491 1.58264 1.25571 0.96658 1.00661 1.02942 0.85023 0.78165 0.79463 0.76749 1.19184 1.21912 1.21771 1.19402 0.90781 0.83291 1.42626 0.90101 1.46106 1.03551 1.00379 1.86255 1.22791 0.94901 0.84101 0.97905 1.23090 0.97179 0.92230 0.81692 1.86583 1.35600 1.95142 1.17193 1.21748 0.82230 0.97861 0.98870 1.45770 1.14073 1.28238 1.48261 1.20579 0.87264 0.80407 0.80556 1.90687 1.76832 1.41171 1.36364 1.22667 0.92459 1.01454 0.98793 0.85680 1.23269 1.06013 0.97219 0.90995 1.23816 0.93041 0.94648 0.92109 1.88904 1.52793 1.63504 1.24344 1.21413 0.91892 0.90325 0.89160 0.89757 1.20314 0.95500 0.96584 0.93904 1.22173 0.92719 0.98993 1.02725 1.23253 0.99139 0.94816 0.89613 1.67711 1.29149 1.14952 1.10161 1.23066 0.87852 0.94299 1.01467 1.22182 1.00670 1.01492 0.94579 1.22880 0.87415 0.91356 0.96632 0.94270 0.92421 0.91162 0.76741 0.89903 0.90963 0.75153 0.87988 0.86592 0.85758 0.92539 0.82630 0.80221 0.80872 0.84231 0.95733 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.02 11.39 21.65 0.25 -55.78 16 2 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.23 -13.06 10.70 84.03 0.90 -12.16 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.64 -32.10 3.70 -719.59 -2.67 -34.76 16 10 C 0.13 4.99 8.34 86.49 0.72 5.71 16 11 C 0.10 3.34 1.49 -10.14 -0.02 3.33 16 12 O -0.54 -17.24 13.50 -148.98 -2.01 -19.25 16 13 C 0.12 3.09 5.26 86.38 0.45 3.54 16 14 N -0.71 -14.80 5.19 -463.05 -2.40 -17.20 16 15 C 0.52 11.61 7.05 87.66 0.62 12.23 16 16 O -0.57 -16.93 15.25 -3.04 -0.05 -16.98 16 17 C -0.13 -2.12 3.06 -10.55 -0.03 -2.15 16 18 H 0.13 1.81 7.69 -2.39 -0.02 1.79 16 19 C -0.14 -1.38 6.70 31.89 0.21 -1.17 16 20 C 0.04 0.50 7.72 72.66 0.56 1.06 16 21 O -0.38 -6.99 10.54 -148.98 -1.57 -8.56 16 22 C 0.13 2.53 3.29 30.22 0.10 2.63 16 23 H 0.08 2.06 6.36 -2.39 -0.02 2.04 16 24 C -0.05 -1.06 4.80 -19.67 -0.09 -1.15 16 25 C -0.15 -2.42 9.46 22.36 0.21 -2.21 16 26 C 0.09 1.52 11.18 84.68 0.95 2.47 16 27 N -0.51 -10.92 10.36 -195.84 -2.03 -12.95 16 28 C 0.09 1.75 11.18 84.68 0.95 2.69 16 29 C -0.17 -3.37 9.79 22.36 0.22 -3.15 16 30 C 0.14 6.29 6.92 86.44 0.60 6.89 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 34 H 0.38 8.31 7.73 -74.06 -0.57 7.74 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 37 H 0.41 6.82 7.42 -92.71 -0.69 6.13 16 38 H 0.10 0.84 7.75 -2.39 -0.02 0.82 16 39 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.16 1.92 7.80 -2.91 -0.02 1.90 16 43 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 44 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.02 1.13 8.06 -2.39 -0.02 1.11 16 47 H 0.05 2.50 7.16 -2.39 -0.02 2.49 16 Total: -1.00 -77.35 390.43 -1.89 -79.24 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.25 Total: 23.37 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 6.81 Total: 15.33 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -6.85 Total: -120.69 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -3.63 Total: -44.79 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.35 -1.89 -79.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278868305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.954 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds