Wall clock time and date at job start Wed Apr 1 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00302 * 66.03980 * 13 12 10 15 15 C 1.50140 * 110.27590 * 174.31282 * 14 13 12 16 16 C 1.29823 * 123.28749 * 342.93553 * 15 14 13 17 17 C 1.50703 * 118.55903 * 180.39016 * 16 15 14 18 18 N 1.46505 * 109.46784 * 94.99514 * 17 16 15 19 19 C 1.34777 * 119.99305 * 180.02562 * 18 17 16 20 20 O 1.21282 * 120.00712 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99677 * 180.02562 * 19 18 17 22 22 C 1.50696 * 109.47223 * 180.02562 * 21 19 18 23 23 C 1.34507 * 125.79126 * 89.71627 * 22 21 19 24 24 C 1.41389 * 106.84355 * 179.88996 * 23 22 21 25 25 C 1.34513 * 106.83837 * 0.36777 * 24 23 22 26 26 O 1.34304 * 108.42129 * 359.77489 * 25 24 23 27 27 C 1.50311 * 122.89158 * 0.36273 * 16 15 14 28 28 C 1.47239 * 111.00267 * 188.97579 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.08998 * 109.33533 * 294.56443 * 14 13 12 34 34 H 1.09003 * 109.33216 * 54.07246 * 14 13 12 35 35 H 1.08001 * 118.36083 * 162.94635 * 15 14 13 36 36 H 1.08995 * 109.47496 * 214.99571 * 17 16 15 37 37 H 1.09003 * 109.46520 * 335.00060 * 17 16 15 38 38 H 0.96995 * 120.00196 * 0.02562 * 18 17 16 39 39 H 1.09006 * 109.47123 * 300.00176 * 21 19 18 40 40 H 1.08996 * 109.47262 * 59.99573 * 21 19 18 41 41 H 1.08004 * 126.58287 * 0.02562 * 23 22 21 42 42 H 1.07996 * 126.58267 * 180.16547 * 24 23 22 43 43 H 1.08000 * 125.79147 * 179.74738 * 25 24 23 44 44 H 1.09006 * 109.42858 * 103.60407 * 27 16 15 45 45 H 1.08998 * 109.43146 * 223.44940 * 27 16 15 46 46 H 1.08999 * 109.63934 * 287.50027 * 28 13 12 47 47 H 1.08999 * 109.63492 * 48.10736 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9634 -6.0118 1.2713 15 6 3.8326 -7.2350 1.3188 16 6 3.6550 -8.2656 0.5495 17 6 4.5866 -9.4414 0.6938 18 7 3.9860 -10.4333 1.5892 19 6 4.6445 -11.5758 1.8677 20 8 5.7344 -11.7825 1.3775 21 6 4.0265 -12.5964 2.7882 22 6 4.9586 -13.7715 2.9336 23 6 5.9244 -13.8995 3.8610 24 6 6.5483 -15.1477 3.6333 25 6 5.9318 -15.7041 2.5751 26 8 4.9698 -14.8662 2.1554 27 6 2.5607 -8.3380 -0.4783 28 6 1.5091 -7.2639 -0.1900 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 3.5891 -5.1215 1.3351 34 1 2.2735 -6.0263 2.1151 35 1 4.6463 -7.2589 2.0285 36 1 4.7581 -9.8912 -0.2841 37 1 5.5358 -9.1038 1.1100 38 1 3.1145 -10.2678 1.9815 39 1 3.8542 -12.1466 3.7661 40 1 3.0776 -12.9342 2.3715 41 1 6.1739 -13.1867 4.6331 42 1 7.3653 -15.5714 4.1982 43 1 6.1702 -16.6621 2.1370 44 1 2.9831 -8.1746 -1.4698 45 1 2.0935 -9.3222 -0.4419 46 1 0.9512 -7.5301 0.7078 47 1 0.8281 -7.1810 -1.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284970485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:02 Heat of formation + Delta-G solvation = -31.082374 kcal Electronic energy + Delta-G solvation = -28786.254687 eV Core-core repulsion = 24550.226980 eV Total energy + Delta-G solvation = -4236.027707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.85026 -40.04158 -39.22556 -37.77334 -35.55062 -33.95737 -33.52026 -33.11563 -32.31755 -31.24612 -30.79342 -28.77811 -27.38491 -25.74262 -24.15390 -23.61125 -22.06553 -22.01738 -21.36834 -20.48540 -19.25095 -18.17689 -17.90255 -17.63370 -17.27678 -16.34677 -16.17828 -16.03576 -15.82914 -15.40543 -14.97752 -14.70059 -14.58990 -14.27456 -13.92245 -13.87242 -13.73585 -13.66739 -13.17774 -13.11621 -13.01177 -12.90405 -12.68062 -12.32764 -12.20303 -12.10065 -11.88074 -11.51405 -11.37093 -11.11627 -10.89629 -10.51161 -10.40457 -10.31864 -10.23038 -10.17562 -9.50864 -9.35232 -8.95667 -8.74673 -8.49623 -8.00090 -7.86748 -6.43422 -3.84195 1.38179 1.95498 2.30633 2.33603 2.64018 3.16782 3.21301 3.25692 3.31207 3.87506 3.95720 4.17388 4.22785 4.46207 4.58804 4.61258 4.69510 4.71803 4.86364 4.92815 4.99882 5.19497 5.22527 5.28809 5.36973 5.49232 5.50586 5.50882 5.60953 5.61523 5.65705 5.76010 5.78556 5.87641 5.92820 6.06147 6.13669 6.20098 6.21899 6.30366 6.41477 6.82761 6.87656 7.17698 7.28243 7.31561 7.53778 7.89819 8.04783 8.60032 9.16606 9.52625 10.04364 10.74270 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035847 B = 0.001465 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.918796 B =19112.992932 C =19453.509912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.045 3.955 13 N -0.509 5.509 14 C 0.072 3.928 15 C -0.105 4.105 16 C -0.157 4.157 17 C 0.159 3.841 18 N -0.723 5.723 19 C 0.511 3.489 20 O -0.529 6.529 21 C -0.061 4.061 22 C 0.004 3.996 23 C -0.195 4.195 24 C -0.214 4.214 25 C -0.038 4.038 26 O -0.173 6.173 27 C -0.071 4.071 28 C 0.050 3.950 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.402 0.598 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.202 0.798 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -27.631 7.056 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.087 4.087 13 N -0.233 5.233 14 C -0.055 4.055 15 C -0.125 4.125 16 C -0.157 4.157 17 C 0.037 3.963 18 N -0.376 5.376 19 C 0.296 3.704 20 O -0.405 6.405 21 C -0.101 4.101 22 C -0.047 4.047 23 C -0.215 4.215 24 C -0.233 4.233 25 C -0.106 4.106 26 O -0.069 6.069 27 C -0.108 4.108 28 C -0.078 4.078 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.219 0.781 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.695 -27.572 6.049 28.469 hybrid contribution -0.997 0.845 0.974 1.630 sum 2.697 -26.728 7.024 27.766 Atomic orbital electron populations 1.69611 1.05938 1.28153 1.50620 1.25252 0.95620 0.99703 0.97305 0.85862 0.79217 0.80820 0.78421 1.20391 1.20957 1.19434 1.19704 0.93372 0.82206 1.47587 0.87898 1.41866 1.09179 1.04588 1.64394 1.19736 0.88409 0.84535 0.84500 1.90483 1.13689 1.86852 1.55163 1.21907 0.93891 0.91240 1.01617 1.62031 1.24724 1.01315 1.35255 1.21259 0.96373 0.98375 0.89461 1.22355 0.98638 0.93840 0.97649 1.20835 0.99477 0.95461 0.99973 1.20338 0.95080 0.86778 0.94144 1.46083 1.22852 1.18985 1.49644 1.20408 0.85743 0.82257 0.81972 1.90764 1.20494 1.77306 1.51946 1.20090 0.97957 0.89913 1.02147 1.21453 1.01023 0.88817 0.93379 1.21539 0.98171 0.99065 1.02680 1.21814 1.04005 0.96672 1.00778 1.24007 0.91562 0.96704 0.98304 1.83984 1.47730 1.25835 1.49350 1.20396 0.94209 0.97799 0.98414 1.22218 0.95409 0.89810 1.00396 0.91883 0.77502 0.93434 0.89186 0.86440 0.94164 0.87150 0.90899 0.90989 0.76372 0.85808 0.86945 0.83570 0.83442 0.78094 0.90067 0.91198 0.94881 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 10 C 0.44 10.15 7.54 -10.99 -0.08 10.07 16 11 O -0.58 -15.17 13.88 5.55 0.08 -15.09 16 12 C 0.04 0.76 5.44 -4.98 -0.03 0.74 16 13 N -0.51 -8.08 4.46 -237.58 -1.06 -9.14 16 14 C 0.07 1.11 5.22 -5.28 -0.03 1.08 16 15 C -0.11 -1.31 9.50 -35.97 -0.34 -1.65 16 16 C -0.16 -1.70 5.26 -100.92 -0.53 -2.23 16 17 C 0.16 1.62 5.72 -5.19 -0.03 1.59 16 18 N -0.72 -5.85 5.55 -61.47 -0.34 -6.19 16 19 C 0.51 5.01 7.82 -10.98 -0.09 4.92 16 20 O -0.53 -7.74 16.03 5.56 0.09 -7.65 16 21 C -0.06 -0.40 6.23 -29.04 -0.18 -0.58 16 22 C 0.00 0.04 5.81 -35.63 -0.21 -0.17 16 23 C -0.20 -1.81 10.81 -39.70 -0.43 -2.24 16 24 C -0.21 -1.80 10.91 -39.70 -0.43 -2.23 16 25 C -0.04 -0.31 12.09 29.42 0.36 0.05 16 26 O -0.17 -1.79 10.65 5.69 0.06 -1.73 16 27 C -0.07 -0.74 6.04 -28.04 -0.17 -0.91 16 28 C 0.05 0.59 5.59 -3.61 -0.02 0.57 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 31 H 0.05 0.73 8.06 -51.93 -0.42 0.32 16 32 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 33 H 0.12 2.24 5.98 -51.93 -0.31 1.93 16 34 H 0.04 0.57 8.06 -51.93 -0.42 0.16 16 35 H 0.11 1.24 7.81 -52.49 -0.41 0.83 16 36 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 37 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 38 H 0.40 2.21 8.46 -40.82 -0.35 1.87 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 47 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -35.19 397.33 -8.76 -43.96 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.77 Total: 10.39 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.45 Total: 1.15 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.73 Total: -52.81 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.23 Total: -24.47 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.19 -8.76 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284970485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.874 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds