Wall clock time and date at job start Wed Apr 1 2020 04:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00302 * 66.03980 * 13 12 10 15 15 C 1.50140 * 110.27590 * 174.31282 * 14 13 12 16 16 C 1.29823 * 123.28749 * 342.93553 * 15 14 13 17 17 C 1.50703 * 118.55903 * 180.39016 * 16 15 14 18 18 N 1.46505 * 109.46784 * 94.99514 * 17 16 15 19 19 C 1.34777 * 119.99305 * 180.02562 * 18 17 16 20 20 O 1.21282 * 120.00712 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99677 * 180.02562 * 19 18 17 22 22 C 1.50696 * 109.47223 * 180.02562 * 21 19 18 23 23 C 1.34507 * 125.79126 * 89.71627 * 22 21 19 24 24 C 1.41389 * 106.84355 * 179.88996 * 23 22 21 25 25 C 1.34513 * 106.83837 * 0.36777 * 24 23 22 26 26 O 1.34304 * 108.42129 * 359.77489 * 25 24 23 27 27 C 1.50311 * 122.89158 * 0.36273 * 16 15 14 28 28 C 1.47239 * 111.00267 * 188.97579 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.08998 * 109.33533 * 294.56443 * 14 13 12 34 34 H 1.09003 * 109.33216 * 54.07246 * 14 13 12 35 35 H 1.08001 * 118.36083 * 162.94635 * 15 14 13 36 36 H 1.08995 * 109.47496 * 214.99571 * 17 16 15 37 37 H 1.09003 * 109.46520 * 335.00060 * 17 16 15 38 38 H 0.96995 * 120.00196 * 0.02562 * 18 17 16 39 39 H 1.09006 * 109.47123 * 300.00176 * 21 19 18 40 40 H 1.08996 * 109.47262 * 59.99573 * 21 19 18 41 41 H 1.08004 * 126.58287 * 0.02562 * 23 22 21 42 42 H 1.07996 * 126.58267 * 180.16547 * 24 23 22 43 43 H 1.08000 * 125.79147 * 179.74738 * 25 24 23 44 44 H 1.09006 * 109.42858 * 103.60407 * 27 16 15 45 45 H 1.08998 * 109.43146 * 223.44940 * 27 16 15 46 46 H 1.08999 * 109.63934 * 287.50027 * 28 13 12 47 47 H 1.08999 * 109.63492 * 48.10736 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9634 -6.0118 1.2713 15 6 3.8326 -7.2350 1.3188 16 6 3.6550 -8.2656 0.5495 17 6 4.5866 -9.4414 0.6938 18 7 3.9860 -10.4333 1.5892 19 6 4.6445 -11.5758 1.8677 20 8 5.7344 -11.7825 1.3775 21 6 4.0265 -12.5964 2.7882 22 6 4.9586 -13.7715 2.9336 23 6 5.9244 -13.8995 3.8610 24 6 6.5483 -15.1477 3.6333 25 6 5.9318 -15.7041 2.5751 26 8 4.9698 -14.8662 2.1554 27 6 2.5607 -8.3380 -0.4783 28 6 1.5091 -7.2639 -0.1900 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 3.5891 -5.1215 1.3351 34 1 2.2735 -6.0263 2.1151 35 1 4.6463 -7.2589 2.0285 36 1 4.7581 -9.8912 -0.2841 37 1 5.5358 -9.1038 1.1100 38 1 3.1145 -10.2678 1.9815 39 1 3.8542 -12.1466 3.7661 40 1 3.0776 -12.9342 2.3715 41 1 6.1739 -13.1867 4.6331 42 1 7.3653 -15.5714 4.1982 43 1 6.1702 -16.6621 2.1370 44 1 2.9831 -8.1746 -1.4698 45 1 2.0935 -9.3222 -0.4419 46 1 0.9512 -7.5301 0.7078 47 1 0.8281 -7.1810 -1.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284970485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:01 Heat of formation + Delta-G solvation = -57.393396 kcal Electronic energy + Delta-G solvation = -28787.395619 eV Core-core repulsion = 24550.226980 eV Total energy + Delta-G solvation = -4237.168639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.47290 -40.94625 -40.48290 -39.28245 -36.60865 -35.84615 -34.27707 -34.00190 -33.25062 -32.93980 -31.76976 -29.88321 -28.29944 -27.07460 -25.65489 -24.63227 -23.07471 -22.68197 -22.10504 -21.15273 -21.03668 -19.87172 -18.96333 -18.33584 -18.11803 -17.76223 -17.14389 -16.83131 -16.72387 -16.59258 -16.39511 -16.03642 -15.60830 -15.47539 -15.33640 -15.20746 -14.79970 -14.58931 -14.11643 -13.99417 -13.75391 -13.73642 -13.64647 -13.53475 -13.49750 -13.22201 -12.96880 -12.90864 -12.66246 -12.47183 -12.40688 -12.12080 -12.06822 -11.46378 -11.44395 -11.16646 -10.82421 -10.26320 -10.14701 -9.99402 -9.88257 -9.38089 -9.15534 -8.45277 -5.93465 0.73637 1.06443 1.38347 1.42269 1.54421 1.58333 1.70058 2.07735 2.08027 2.29369 2.51016 2.79960 3.21861 3.41036 3.58787 3.62285 3.82269 3.96493 4.14779 4.17188 4.19880 4.29838 4.37180 4.40174 4.43555 4.45832 4.49491 4.54878 4.60713 4.65689 4.70796 4.80159 4.93613 4.97658 5.01900 5.10074 5.20543 5.23208 5.35928 5.40758 5.43814 5.61857 5.87506 5.97615 6.15510 6.20573 6.23924 6.52811 6.63140 7.15274 7.21352 7.59139 8.15486 8.72056 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035847 B = 0.001465 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.918796 B =19112.992932 C =19453.509912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.616 6.616 12 C 0.058 3.942 13 N -0.533 5.533 14 C 0.078 3.922 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.165 3.835 18 N -0.708 5.708 19 C 0.511 3.489 20 O -0.584 6.584 21 C -0.054 4.054 22 C -0.016 4.016 23 C -0.214 4.214 24 C -0.231 4.231 25 C -0.044 4.044 26 O -0.193 6.193 27 C -0.071 4.071 28 C 0.050 3.950 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.419 0.581 39 H 0.157 0.843 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.234 0.766 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -29.227 7.384 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.502 6.502 12 C -0.073 4.073 13 N -0.258 5.258 14 C -0.049 4.049 15 C -0.143 4.143 16 C -0.134 4.134 17 C 0.042 3.958 18 N -0.360 5.360 19 C 0.298 3.702 20 O -0.464 6.464 21 C -0.093 4.093 22 C -0.067 4.067 23 C -0.234 4.234 24 C -0.250 4.250 25 C -0.111 4.111 26 O -0.090 6.090 27 C -0.108 4.108 28 C -0.077 4.077 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.256 0.744 39 H 0.174 0.826 40 H 0.158 0.842 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.250 0.750 44 H 0.091 0.909 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.096 -29.179 6.394 29.944 hybrid contribution -0.472 1.247 0.859 1.586 sum 1.624 -27.931 7.253 28.903 Atomic orbital electron populations 1.69667 1.06745 1.29202 1.50494 1.25979 0.96505 1.02237 0.96379 0.84965 0.77892 0.77125 0.78583 1.19778 1.19531 1.19903 1.19643 0.92644 0.84082 1.49811 0.90453 1.41930 1.09289 1.04661 1.65319 1.20849 0.88316 0.86007 0.82081 1.90468 1.15804 1.87770 1.56143 1.21774 0.93539 0.88397 1.03640 1.61971 1.25389 1.02762 1.35670 1.21029 0.96329 0.97729 0.89858 1.22212 0.99208 0.93437 0.99479 1.20899 0.98977 0.94856 0.98672 1.20140 0.94551 0.86843 0.94270 1.45890 1.23286 1.18037 1.48830 1.20984 0.84986 0.82670 0.81535 1.90746 1.22990 1.78455 1.54175 1.20228 0.97942 0.88028 1.03088 1.22006 1.01864 0.89429 0.93360 1.21885 0.98470 0.99765 1.03242 1.22171 1.04715 0.96723 1.01362 1.24727 0.90747 0.97498 0.98163 1.83975 1.48535 1.26495 1.49982 1.20475 0.93776 0.99078 0.97460 1.22353 0.95828 0.87700 1.01827 0.91356 0.77007 0.91216 0.86985 0.91106 0.93284 0.86594 0.91408 0.92325 0.74402 0.82570 0.84201 0.82648 0.81752 0.74971 0.90909 0.87920 0.92946 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -29.05 5.29 -306.98 -1.62 -30.67 16 10 C 0.44 20.55 7.54 87.66 0.66 21.21 16 11 O -0.62 -33.66 13.88 -3.07 -0.04 -33.70 16 12 C 0.06 1.90 5.44 85.56 0.47 2.36 16 13 N -0.53 -16.27 4.46 -905.56 -4.04 -20.31 16 14 C 0.08 2.38 5.22 85.39 0.45 2.83 16 15 C -0.12 -2.99 9.50 26.68 0.25 -2.74 16 16 C -0.13 -2.66 5.26 -15.40 -0.08 -2.74 16 17 C 0.17 3.14 5.72 85.63 0.49 3.63 16 18 N -0.71 -9.80 5.55 -466.77 -2.59 -12.39 16 19 C 0.51 9.19 7.82 87.66 0.69 9.87 16 20 O -0.58 -16.96 16.03 -3.04 -0.05 -17.01 16 21 C -0.05 -0.57 6.23 29.10 0.18 -0.39 16 22 C -0.02 -0.30 5.81 24.83 0.14 -0.15 16 23 C -0.21 -3.83 10.81 22.19 0.24 -3.59 16 24 C -0.23 -3.71 10.91 22.19 0.24 -3.46 16 25 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 26 O -0.19 -3.84 10.65 -2.56 -0.03 -3.86 16 27 C -0.07 -1.26 6.04 29.75 0.18 -1.08 16 28 C 0.05 1.02 5.59 86.26 0.48 1.50 16 29 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 31 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 32 H 0.11 3.21 7.94 -2.39 -0.02 3.19 16 33 H 0.07 2.84 5.98 -2.39 -0.01 2.83 16 34 H 0.05 1.36 8.06 -2.39 -0.02 1.34 16 35 H 0.12 2.61 7.81 -2.91 -0.02 2.58 16 36 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 37 H 0.06 1.30 7.85 -2.39 -0.02 1.28 16 38 H 0.42 3.13 8.46 -92.71 -0.78 2.34 16 39 H 0.16 0.58 8.14 -2.38 -0.02 0.57 16 40 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.23 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16 47 H 0.09 1.64 7.92 -2.39 -0.02 1.62 16 Total: -1.00 -79.99 397.33 -0.09 -80.08 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.51 Total: 32.56 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 6.48 Total: 9.32 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -7.97 Total: -112.24 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.12 Total: -54.57 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -79.99 -0.09 -80.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284970485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.687 kcal (2) G-P(sol) polarization free energy of solvation -79.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds