Wall clock time and date at job start Wed Apr 1 2020 05:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48501 * 109.47179 * 240.00281 * 3 2 1 5 5 H 1.48504 * 109.47290 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47446 * 120.00170 * 3 2 1 7 7 C 1.38958 * 119.99395 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99580 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00435 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99379 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00410 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.47630 * 111.00155 * 69.87325 * 13 12 10 15 15 C 1.54712 * 107.20532 * 125.56907 * 14 13 12 16 16 C 1.54184 * 102.14442 * 21.62024 * 15 14 13 17 17 H 1.09005 * 109.49053 * 77.48604 * 16 15 14 18 18 C 1.50947 * 112.77308 * 199.69623 * 16 15 14 19 19 N 1.46711 * 111.13360 * 70.15674 * 18 16 15 20 20 C 1.34779 * 121.35232 * 232.16644 * 19 18 16 21 21 O 1.21692 * 119.99903 * 184.23249 * 20 19 18 22 22 C 1.46658 * 120.00138 * 4.23837 * 20 19 18 23 23 C 1.36540 * 125.98743 * 173.36058 * 22 20 19 24 24 C 1.40370 * 106.70553 * 180.02562 * 23 22 20 25 25 C 1.35122 * 107.11552 * 359.97438 * 24 23 22 26 26 O 1.33929 * 108.77125 * 0.02562 * 25 24 23 27 27 C 1.47209 * 117.28929 * 52.44259 * 19 18 16 28 28 C 1.53215 * 107.51876 * 301.65826 * 27 19 18 29 29 C 1.49042 * 111.00088 * 190.12193 * 13 12 10 30 30 H 1.09001 * 112.00552 * 90.01659 * 29 13 12 31 31 H 0.97008 * 119.99540 * 359.97438 * 1 2 3 32 32 H 0.97006 * 119.99740 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.46980 * 60.00071 * 12 10 9 34 34 H 1.09003 * 109.46905 * 300.00215 * 12 10 9 35 35 H 1.08997 * 109.89113 * 6.16813 * 14 13 12 36 36 H 1.09008 * 110.03063 * 245.04161 * 14 13 12 37 37 H 1.09001 * 110.86386 * 263.45851 * 15 14 13 38 38 H 1.08998 * 111.04868 * 139.87118 * 15 14 13 39 39 H 1.08999 * 109.15098 * 309.72539 * 18 16 15 40 40 H 1.09003 * 109.09551 * 190.55218 * 18 16 15 41 41 H 1.07997 * 126.64656 * 0.02562 * 23 22 20 42 42 H 1.07996 * 126.43742 * 180.02562 * 24 23 22 43 43 H 1.08004 * 125.61438 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.80132 * 61.24466 * 27 19 18 45 45 H 1.08999 * 109.80178 * 182.10885 * 27 19 18 46 46 H 1.09001 * 109.33361 * 297.69367 * 28 27 19 47 47 H 1.08999 * 109.11354 * 178.32811 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0087 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2434 -4.8630 0.0000 13 7 2.1979 -5.9796 0.0007 14 6 2.9012 -6.0736 1.2953 15 6 2.7020 -7.5151 1.8207 16 6 2.3680 -8.2879 0.5289 17 1 3.2838 -8.4682 -0.0341 18 6 1.6738 -9.6012 0.7967 19 7 0.3082 -9.3871 1.2885 20 6 -0.1291 -9.9724 2.4210 21 8 -1.2887 -9.8402 2.7656 22 6 0.7925 -10.7685 3.2381 23 6 0.5189 -11.3059 4.4632 24 6 1.6780 -11.9819 4.8752 25 6 2.5964 -11.8300 3.8958 26 8 2.0593 -11.0981 2.9111 27 6 -0.5667 -8.5118 0.4913 28 6 0.1167 -7.1442 0.3910 29 6 1.5040 -7.2757 -0.2444 30 1 1.4498 -7.5156 -1.3063 31 1 -0.4850 0.8401 0.0004 32 1 0.3532 -2.3906 -0.0002 33 1 0.6171 -4.9204 -0.8903 34 1 0.6164 -4.9208 0.8897 35 1 2.4764 -5.3597 2.0008 36 1 3.9637 -5.8723 1.1585 37 1 1.8719 -7.5601 2.5257 38 1 3.6164 -7.8959 2.2756 39 1 2.2393 -10.1589 1.5432 40 1 1.6347 -10.1787 -0.1270 41 1 -0.4094 -11.2262 5.0092 42 1 1.8105 -12.5226 5.8007 43 1 3.5986 -12.2324 3.9054 44 1 -0.7023 -8.9335 -0.5046 45 1 -1.5335 -8.4084 0.9840 46 1 0.2184 -6.7176 1.3889 47 1 -0.4967 -6.4827 -0.2207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320096920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:17 Heat of formation + Delta-G solvation = -18.199630 kcal Electronic energy + Delta-G solvation = -31248.219751 eV Core-core repulsion = 27012.750681 eV Total energy + Delta-G solvation = -4235.469070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.11629 -40.87312 -39.22903 -37.85121 -35.89114 -33.87368 -33.50285 -32.95518 -31.56275 -31.14039 -29.97807 -29.06870 -26.98135 -25.30145 -24.38751 -23.53636 -22.59402 -22.08850 -20.91544 -20.62565 -19.38947 -18.85422 -17.96815 -17.74719 -17.06538 -16.74676 -16.32690 -16.08838 -15.65590 -15.27449 -14.95806 -14.67622 -14.39692 -14.04512 -13.93851 -13.81652 -13.57633 -13.44523 -13.25817 -13.16481 -13.05674 -12.70587 -12.31195 -12.19079 -12.04745 -11.84604 -11.62068 -11.40501 -11.07762 -10.95708 -10.74083 -10.64109 -10.45440 -10.42653 -10.40033 -10.30188 -10.18263 -9.45877 -9.20647 -8.88524 -8.41032 -7.93397 -7.82539 -6.38681 -3.79286 0.72370 2.00390 2.22041 2.72858 2.89648 3.21725 3.27096 3.31446 3.91578 3.96887 4.10377 4.22673 4.37088 4.53255 4.56200 4.63190 4.73149 4.88877 4.92463 5.05892 5.13148 5.16004 5.26077 5.29322 5.31519 5.39284 5.41311 5.45480 5.53072 5.59510 5.71739 5.74770 5.81679 5.84015 5.91399 5.94116 5.95355 6.10438 6.25860 6.27184 6.33346 6.48382 6.48957 7.03416 7.22588 7.27240 7.57585 7.72899 8.09285 8.65606 9.21484 9.58258 10.10662 10.79177 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002303 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.656919 B =12154.902055 C =12388.468703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.039 3.961 13 N -0.501 5.501 14 C 0.058 3.942 15 C -0.134 4.134 16 C -0.106 4.106 17 H 0.095 0.905 18 C 0.104 3.896 19 N -0.599 5.599 20 C 0.604 3.396 21 O -0.524 6.524 22 C -0.076 4.076 23 C -0.120 4.120 24 C -0.223 4.223 25 C -0.015 4.015 26 O -0.156 6.156 27 C 0.115 3.885 28 C -0.165 4.165 29 C 0.079 3.921 30 H 0.099 0.901 31 H 0.271 0.729 32 H 0.391 0.609 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.209 0.791 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -25.681 5.153 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.427 4.427 8 H 0.119 0.881 9 N -0.204 5.204 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.092 4.092 13 N -0.224 5.224 14 C -0.070 4.070 15 C -0.172 4.172 16 C -0.126 4.126 17 H 0.114 0.886 18 C -0.019 4.019 19 N -0.331 5.331 20 C 0.392 3.608 21 O -0.402 6.402 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.242 4.242 25 C -0.084 4.084 26 O -0.053 6.053 27 C -0.007 4.007 28 C -0.204 4.204 29 C -0.029 4.029 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.224 0.776 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.177 0.823 42 H 0.173 0.827 43 H 0.226 0.774 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.609 -25.191 4.638 25.665 hybrid contribution -0.740 0.744 0.866 1.361 sum 0.869 -24.447 5.505 25.074 Atomic orbital electron populations 1.69606 1.05910 1.28182 1.50765 1.25249 0.95630 0.99663 0.97459 0.85930 0.78758 0.80558 0.79034 1.19914 1.21004 1.19969 1.19630 0.93279 0.82258 1.47568 0.88060 1.41855 1.09133 1.04580 1.64808 1.19804 0.88450 0.84572 0.84315 1.90513 1.13697 1.87050 1.54847 1.22111 0.94318 0.91370 1.01444 1.63755 1.25822 1.00898 1.31944 1.22762 1.00905 0.94201 0.89130 1.22738 1.01453 0.96308 0.96704 1.21793 0.99487 0.93873 0.97413 0.88636 1.21651 0.81752 0.97269 1.01185 1.48004 1.14105 1.47440 1.23542 1.16646 0.85768 0.78612 0.79761 1.90880 1.16341 1.62132 1.70844 1.22072 0.84367 1.07761 0.98513 1.21985 1.00297 0.97397 0.94345 1.21856 0.93808 1.06404 1.02167 1.24587 0.99987 0.96281 0.87551 1.84200 1.24696 1.55064 1.41302 1.21780 0.94274 0.89213 0.95443 1.22766 0.97971 0.97052 1.02636 1.22793 0.91078 0.89585 0.99454 0.88313 0.91873 0.77565 0.89437 0.93047 0.93120 0.89831 0.91972 0.90872 0.87150 0.90841 0.82301 0.82654 0.77450 0.90532 0.88650 0.90980 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.51 5.29 -10.96 -0.06 -14.57 16 10 C 0.44 10.55 7.47 -10.99 -0.08 10.47 16 11 O -0.58 -15.72 15.12 5.54 0.08 -15.64 16 12 C 0.04 0.69 3.87 -4.98 -0.02 0.68 16 13 N -0.50 -8.10 4.86 -223.95 -1.09 -9.19 16 14 C 0.06 0.92 5.34 -2.52 -0.01 0.90 16 15 C -0.13 -1.59 5.88 -25.21 -0.15 -1.74 16 16 C -0.11 -1.09 2.88 -90.55 -0.26 -1.35 16 17 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 18 C 0.10 0.92 5.72 -4.96 -0.03 0.89 16 19 N -0.60 -6.36 2.80 -175.59 -0.49 -6.85 16 20 C 0.60 7.48 7.68 -12.86 -0.10 7.38 16 21 O -0.52 -7.98 16.37 5.20 0.09 -7.90 16 22 C -0.08 -0.80 6.87 -36.80 -0.25 -1.05 16 23 C -0.12 -1.13 10.63 -39.39 -0.42 -1.55 16 24 C -0.22 -1.54 10.87 -39.89 -0.43 -1.98 16 25 C -0.02 -0.09 12.08 29.62 0.36 0.27 16 26 O -0.16 -1.33 7.12 4.99 0.04 -1.30 16 27 C 0.12 1.17 6.47 -3.54 -0.02 1.15 16 28 C -0.17 -1.86 3.75 -26.54 -0.10 -1.96 16 29 C 0.08 0.94 3.70 -65.96 -0.24 0.70 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 33 H 0.09 1.40 7.42 -51.93 -0.39 1.02 16 34 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 35 H 0.05 0.90 7.35 -51.93 -0.38 0.51 16 36 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 37 H 0.06 0.79 7.41 -51.93 -0.38 0.41 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 0.94 3.83 -54.86 -0.21 0.73 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.21 0.42 8.06 -52.48 -0.42 0.00 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 1.07 7.08 -51.93 -0.37 0.70 16 46 H 0.07 0.95 5.91 -51.93 -0.31 0.65 16 47 H 0.08 0.92 6.89 -51.93 -0.36 0.56 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -34.12 372.46 -8.48 -42.61 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.36 Total: 10.30 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.01 Total: 4.76 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.91 Total: -54.72 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.20 Total: -24.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.12 -8.48 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320096920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.407 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds