Wall clock time and date at job start Wed Apr 1 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48501 * 109.47179 * 240.00281 * 3 2 1 5 5 H 1.48504 * 109.47290 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47446 * 120.00170 * 3 2 1 7 7 C 1.38958 * 119.99395 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99580 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00435 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99379 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00410 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.47630 * 111.00155 * 69.87325 * 13 12 10 15 15 C 1.54712 * 107.20532 * 125.56907 * 14 13 12 16 16 C 1.54184 * 102.14442 * 21.62024 * 15 14 13 17 17 H 1.09005 * 109.49053 * 77.48604 * 16 15 14 18 18 C 1.50947 * 112.77308 * 199.69623 * 16 15 14 19 19 N 1.46711 * 111.13360 * 70.15674 * 18 16 15 20 20 C 1.34779 * 121.35232 * 232.16644 * 19 18 16 21 21 O 1.21692 * 119.99903 * 184.23249 * 20 19 18 22 22 C 1.46658 * 120.00138 * 4.23837 * 20 19 18 23 23 C 1.36540 * 125.98743 * 173.36058 * 22 20 19 24 24 C 1.40370 * 106.70553 * 180.02562 * 23 22 20 25 25 C 1.35122 * 107.11552 * 359.97438 * 24 23 22 26 26 O 1.33929 * 108.77125 * 0.02562 * 25 24 23 27 27 C 1.47209 * 117.28929 * 52.44259 * 19 18 16 28 28 C 1.53215 * 107.51876 * 301.65826 * 27 19 18 29 29 C 1.49042 * 111.00088 * 190.12193 * 13 12 10 30 30 H 1.09001 * 112.00552 * 90.01659 * 29 13 12 31 31 H 0.97008 * 119.99540 * 359.97438 * 1 2 3 32 32 H 0.97006 * 119.99740 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.46980 * 60.00071 * 12 10 9 34 34 H 1.09003 * 109.46905 * 300.00215 * 12 10 9 35 35 H 1.08997 * 109.89113 * 6.16813 * 14 13 12 36 36 H 1.09008 * 110.03063 * 245.04161 * 14 13 12 37 37 H 1.09001 * 110.86386 * 263.45851 * 15 14 13 38 38 H 1.08998 * 111.04868 * 139.87118 * 15 14 13 39 39 H 1.08999 * 109.15098 * 309.72539 * 18 16 15 40 40 H 1.09003 * 109.09551 * 190.55218 * 18 16 15 41 41 H 1.07997 * 126.64656 * 0.02562 * 23 22 20 42 42 H 1.07996 * 126.43742 * 180.02562 * 24 23 22 43 43 H 1.08004 * 125.61438 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.80132 * 61.24466 * 27 19 18 45 45 H 1.08999 * 109.80178 * 182.10885 * 27 19 18 46 46 H 1.09001 * 109.33361 * 297.69367 * 28 27 19 47 47 H 1.08999 * 109.11354 * 178.32811 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0087 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2434 -4.8630 0.0000 13 7 2.1979 -5.9796 0.0007 14 6 2.9012 -6.0736 1.2953 15 6 2.7020 -7.5151 1.8207 16 6 2.3680 -8.2879 0.5289 17 1 3.2838 -8.4682 -0.0341 18 6 1.6738 -9.6012 0.7967 19 7 0.3082 -9.3871 1.2885 20 6 -0.1291 -9.9724 2.4210 21 8 -1.2887 -9.8402 2.7656 22 6 0.7925 -10.7685 3.2381 23 6 0.5189 -11.3059 4.4632 24 6 1.6780 -11.9819 4.8752 25 6 2.5964 -11.8300 3.8958 26 8 2.0593 -11.0981 2.9111 27 6 -0.5667 -8.5118 0.4913 28 6 0.1167 -7.1442 0.3910 29 6 1.5040 -7.2757 -0.2444 30 1 1.4498 -7.5156 -1.3063 31 1 -0.4850 0.8401 0.0004 32 1 0.3532 -2.3906 -0.0002 33 1 0.6171 -4.9204 -0.8903 34 1 0.6164 -4.9208 0.8897 35 1 2.4764 -5.3597 2.0008 36 1 3.9637 -5.8723 1.1585 37 1 1.8719 -7.5601 2.5257 38 1 3.6164 -7.8959 2.2756 39 1 2.2393 -10.1589 1.5432 40 1 1.6347 -10.1787 -0.1270 41 1 -0.4094 -11.2262 5.0092 42 1 1.8105 -12.5226 5.8007 43 1 3.5986 -12.2324 3.9054 44 1 -0.7023 -8.9335 -0.5046 45 1 -1.5335 -8.4084 0.9840 46 1 0.2184 -6.7176 1.3889 47 1 -0.4967 -6.4827 -0.2207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320096920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:16 Heat of formation + Delta-G solvation = -43.183607 kcal Electronic energy + Delta-G solvation = -31249.303137 eV Core-core repulsion = 27012.750681 eV Total energy + Delta-G solvation = -4236.552456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.72579 -41.86731 -40.39494 -39.53461 -36.95696 -35.89701 -34.14434 -33.96176 -33.22812 -32.54633 -30.71889 -30.10041 -28.41552 -26.57930 -25.80349 -24.55138 -23.33148 -22.71314 -22.25851 -21.39114 -20.76100 -20.14402 -19.76068 -18.75358 -17.86023 -17.77985 -17.42073 -17.05627 -16.73808 -16.55350 -16.43676 -16.02738 -15.66513 -15.55489 -15.32120 -14.71697 -14.68398 -14.45555 -14.16682 -14.10770 -13.81528 -13.67421 -13.60463 -13.53018 -13.44442 -13.22339 -12.92157 -12.79982 -12.53198 -12.43927 -12.14416 -12.09571 -11.85032 -11.62910 -11.48478 -11.38716 -11.19309 -11.03052 -10.33918 -10.01614 -9.97171 -9.55522 -9.16603 -8.46893 -5.95682 0.02809 1.38655 1.39951 1.44289 1.51194 1.53993 1.99447 2.05576 2.11040 2.27683 2.74714 3.19224 3.29613 3.44441 3.54892 3.65355 3.79793 3.95161 3.98600 4.04274 4.12863 4.19650 4.24231 4.32007 4.39575 4.42853 4.50048 4.54236 4.55913 4.66861 4.73110 4.75941 4.82659 4.87543 4.90355 4.96419 5.08720 5.11821 5.25693 5.31037 5.38265 5.39609 5.51539 5.86764 5.88433 6.00884 6.10098 6.23945 6.60416 6.87477 7.12550 7.56180 8.12319 8.70441 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002303 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.656919 B =12154.902055 C =12388.468703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.616 6.616 12 C 0.056 3.944 13 N -0.519 5.519 14 C 0.059 3.941 15 C -0.120 4.120 16 C -0.095 4.095 17 H 0.109 0.891 18 C 0.107 3.893 19 N -0.598 5.598 20 C 0.598 3.402 21 O -0.567 6.567 22 C -0.106 4.106 23 C -0.128 4.128 24 C -0.234 4.234 25 C 0.005 3.995 26 O -0.158 6.158 27 C 0.118 3.882 28 C -0.158 4.158 29 C 0.081 3.919 30 H 0.119 0.881 31 H 0.277 0.723 32 H 0.395 0.605 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.153 0.847 42 H 0.179 0.821 43 H 0.254 0.746 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -27.678 4.704 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.076 4.076 13 N -0.243 5.243 14 C -0.069 4.069 15 C -0.159 4.159 16 C -0.115 4.115 17 H 0.128 0.872 18 C -0.015 4.015 19 N -0.328 5.328 20 C 0.388 3.612 21 O -0.449 6.449 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.253 4.253 25 C -0.063 4.063 26 O -0.055 6.055 27 C -0.004 4.004 28 C -0.197 4.197 29 C -0.026 4.026 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.171 0.829 42 H 0.197 0.803 43 H 0.269 0.731 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.535 -27.207 4.170 27.641 hybrid contribution -0.954 1.297 1.058 1.927 sum 1.581 -25.911 5.228 26.480 Atomic orbital electron populations 1.69673 1.06845 1.29316 1.50453 1.26049 0.96562 1.02426 0.96367 0.84992 0.77765 0.76644 0.78960 1.19591 1.19457 1.19776 1.19604 0.92624 0.84019 1.49917 0.90405 1.41940 1.09240 1.04753 1.65498 1.20877 0.88363 0.86003 0.82078 1.90478 1.15697 1.87924 1.56050 1.21927 0.93923 0.88795 1.02942 1.63697 1.26301 1.02272 1.32009 1.22639 0.99272 0.96175 0.88795 1.22618 1.01924 0.93886 0.97441 1.21778 0.99869 0.93875 0.95955 0.87243 1.21771 0.80602 0.96482 1.02605 1.48096 1.14828 1.46827 1.23064 1.16928 0.85627 0.78630 0.80010 1.90842 1.18172 1.63954 1.71935 1.21753 0.85359 1.09613 0.99001 1.22225 1.01131 0.97311 0.94210 1.22172 0.92922 1.06655 1.03558 1.25498 1.01075 0.93748 0.85991 1.84150 1.23745 1.55489 1.42086 1.21775 0.93459 0.88657 0.96513 1.22661 0.97964 0.97862 1.01236 1.22971 0.91070 0.87707 1.00866 0.86367 0.91327 0.77158 0.87127 0.92028 0.96076 0.92042 0.92979 0.89106 0.86343 0.88195 0.82917 0.80316 0.73064 0.87854 0.90076 0.93437 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.77 13.05 21.67 0.28 -50.49 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 3 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.58 -30.45 5.29 -306.99 -1.62 -32.07 16 10 C 0.44 21.54 7.47 87.66 0.65 22.19 16 11 O -0.62 -34.81 15.12 -3.07 -0.05 -34.86 16 12 C 0.06 1.98 3.87 85.56 0.33 2.31 16 13 N -0.52 -16.58 4.86 -862.43 -4.19 -20.76 16 14 C 0.06 1.92 5.34 86.75 0.46 2.38 16 15 C -0.12 -2.75 5.88 31.58 0.19 -2.56 16 16 C -0.10 -1.72 2.88 -10.75 -0.03 -1.75 16 17 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 18 C 0.11 1.57 5.72 85.67 0.49 2.06 16 19 N -0.60 -11.88 2.80 -827.67 -2.31 -14.19 16 20 C 0.60 14.75 7.68 86.44 0.66 15.42 16 21 O -0.57 -17.94 16.37 -4.32 -0.07 -18.01 16 22 C -0.11 -2.15 6.87 24.07 0.17 -1.98 16 23 C -0.13 -2.33 10.63 22.39 0.24 -2.10 16 24 C -0.23 -2.65 10.87 22.07 0.24 -2.41 16 25 C 0.01 0.05 12.08 67.10 0.81 0.86 16 26 O -0.16 -2.27 7.12 -5.07 -0.04 -2.31 16 27 C 0.12 2.24 6.47 86.32 0.56 2.80 16 28 C -0.16 -3.38 3.75 30.72 0.12 -3.27 16 29 C 0.08 1.76 3.70 44.86 0.17 1.93 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 32 H 0.39 19.87 7.90 -92.70 -0.73 19.14 16 33 H 0.11 3.43 7.42 -2.39 -0.02 3.41 16 34 H 0.06 2.09 6.32 -2.39 -0.02 2.07 16 35 H 0.02 0.78 7.35 -2.39 -0.02 0.76 16 36 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.05 1.32 7.41 -2.39 -0.02 1.30 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.12 1.65 3.83 -48.83 -0.19 1.46 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.25 -0.34 8.06 -2.91 -0.02 -0.36 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.82 7.08 -2.39 -0.02 1.80 16 46 H 0.05 1.26 5.91 -2.39 -0.01 1.25 16 47 H 0.09 1.83 6.89 -2.39 -0.02 1.81 16 Total: -1.00 -77.85 372.46 0.47 -77.38 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.11 Total: 32.46 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.33 Total: 17.10 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -7.84 Total: -117.51 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.15 Total: -55.18 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -77.85 0.47 -77.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320096920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.196 kcal (2) G-P(sol) polarization free energy of solvation -77.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds