Wall clock time and date at job start Wed Apr 1 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00196 * 2 1 4 4 H 1.48507 * 109.47121 * 270.00239 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.47264 * 150.00138 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00281 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00062 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47102 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47355 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99594 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00175 * 179.97438 * 12 11 10 15 15 C 1.46967 * 120.59354 * 359.72299 * 14 12 11 16 16 C 1.53807 * 108.39652 * 124.75498 * 15 14 12 17 17 N 1.46963 * 108.57796 * 49.64333 * 16 15 14 18 18 C 1.34774 * 120.59715 * 124.66651 * 17 16 15 19 19 O 1.21585 * 120.00270 * 354.15979 * 18 17 16 20 20 C 1.47620 * 120.00067 * 174.15483 * 18 17 16 21 21 C 1.40286 * 120.49453 * 141.70495 * 20 18 17 22 22 C 1.37955 * 118.35362 * 180.02562 * 21 20 18 23 23 C 1.39166 * 119.26530 * 359.97438 * 22 21 20 24 24 O 1.35498 * 119.52768 * 179.97438 * 23 22 21 25 25 N 1.32410 * 120.95044 * 0.02562 * 23 22 21 26 26 C 1.31671 * 121.79553 * 359.69846 * 25 23 22 27 27 C 1.46963 * 118.80836 * 304.63958 * 17 16 15 28 28 C 1.46962 * 120.59164 * 180.02562 * 14 12 11 29 29 H 0.96997 * 119.99971 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46875 * 60.00029 * 9 7 2 31 31 H 1.09007 * 109.47125 * 300.00283 * 9 7 2 32 32 H 1.08997 * 109.47498 * 60.00057 * 10 9 7 33 33 H 1.09005 * 109.47560 * 299.99896 * 10 9 7 34 34 H 1.09002 * 109.46882 * 60.00123 * 11 10 9 35 35 H 1.08997 * 109.47282 * 299.99905 * 11 10 9 36 36 H 1.09003 * 109.60870 * 244.54431 * 15 14 12 37 37 H 1.09004 * 109.61025 * 5.05180 * 15 14 12 38 38 H 1.08992 * 109.74653 * 289.84686 * 16 15 14 39 39 H 1.09002 * 109.67216 * 169.38436 * 16 15 14 40 40 H 1.07998 * 120.82529 * 0.02963 * 21 20 18 41 41 H 1.08002 * 120.36657 * 180.02562 * 22 21 20 42 42 H 0.96696 * 114.00522 * 89.99616 * 24 23 22 43 43 H 1.07996 * 119.68295 * 180.29157 * 26 25 23 44 44 H 1.09003 * 109.61218 * 295.48213 * 27 17 16 45 45 H 1.09004 * 109.60762 * 174.97377 * 27 17 16 46 46 H 1.08996 * 109.61197 * 354.95283 * 28 14 12 47 47 H 1.09007 * 109.60645 * 115.46284 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0538 -4.0575 0.0009 13 8 5.2656 -4.9794 0.0009 14 7 7.3789 -4.3039 0.0005 15 6 8.3454 -3.1968 -0.0067 16 6 9.2929 -3.3718 1.1922 17 7 9.7972 -4.7522 1.1928 18 6 11.1222 -4.9986 1.1924 19 8 11.9114 -4.0799 1.0845 20 6 11.6155 -6.3837 1.3233 21 6 12.7332 -6.8134 0.5923 22 6 13.1561 -8.1173 0.7480 23 6 12.4666 -8.9569 1.6178 24 8 12.8771 -10.2387 1.7742 25 7 11.4148 -8.5214 2.2939 26 6 10.9805 -7.2836 2.1797 27 6 8.8306 -5.8593 1.1944 28 6 7.8830 -5.6843 0.0007 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6798 0.8894 31 1 3.8746 -0.6809 -0.8905 32 1 3.6578 -3.1507 -0.8896 33 1 3.6585 -3.1503 0.8903 34 1 5.9147 -2.1228 0.8901 35 1 5.9149 -2.1229 -0.8899 36 1 8.9173 -3.2165 -0.9345 37 1 7.8157 -2.2480 0.0793 38 1 8.7533 -3.1790 2.1193 39 1 10.1284 -2.6773 1.1040 40 1 13.2499 -6.1401 -0.0756 41 1 14.0131 -8.4822 0.2014 42 1 13.5257 -10.3605 2.4809 43 1 10.1218 -6.9633 2.7510 44 1 8.2580 -5.8437 2.1217 45 1 9.3605 -6.8076 1.1047 46 1 7.0478 -6.3788 0.0914 47 1 8.4228 -5.8767 -0.9265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327649187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:05 Heat of formation + Delta-G solvation = -58.760256 kcal Electronic energy + Delta-G solvation = -29713.446045 eV Core-core repulsion = 25476.218135 eV Total energy + Delta-G solvation = -4237.227910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60377 -40.48418 -39.53312 -37.63316 -37.28888 -34.52575 -34.39682 -33.26271 -32.38416 -32.00177 -30.94704 -28.87752 -27.76880 -25.02281 -24.94965 -24.14499 -23.47069 -22.56907 -20.79356 -20.03947 -19.52453 -19.05019 -18.13488 -17.48201 -16.96370 -16.67114 -16.61690 -16.27258 -15.97130 -15.87072 -15.67227 -15.19535 -14.93346 -14.43617 -14.26860 -14.04829 -13.98127 -13.64061 -13.46931 -13.30119 -12.95244 -12.87487 -12.62005 -12.48802 -12.18216 -12.05065 -11.81654 -11.72888 -11.66199 -10.97976 -10.81149 -10.71770 -10.62755 -10.05865 -10.03670 -9.87782 -9.72443 -9.64352 -9.57918 -9.46129 -9.15446 -8.66680 -8.52305 -6.01867 -3.99831 -0.05245 0.49697 2.08166 2.25438 2.69763 2.77672 2.85870 3.14138 3.30364 3.37699 3.39910 3.75917 3.93145 4.13695 4.28045 4.31072 4.38325 4.45745 4.54326 4.58001 4.68435 4.84412 4.88728 4.90873 4.95897 5.19207 5.24551 5.28054 5.31252 5.35106 5.42977 5.47834 5.49737 5.54500 5.67937 5.87638 6.01899 6.23871 6.51919 6.65022 6.73332 6.78368 6.88861 7.14636 7.22362 7.35606 7.42882 7.52752 7.81009 8.21001 8.57688 9.04722 9.59993 11.11782 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.001836 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.403585 B =15250.093398 C =15979.205368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.141 4.141 12 C 0.517 3.483 13 O -0.530 6.530 14 N -0.624 5.624 15 C 0.094 3.906 16 C 0.096 3.904 17 N -0.605 5.605 18 C 0.569 3.431 19 O -0.530 6.530 20 C -0.197 4.197 21 C -0.004 4.004 22 C -0.190 4.190 23 C 0.333 3.667 24 O -0.480 6.480 25 N -0.503 5.503 26 C 0.158 3.842 27 C 0.081 3.919 28 C 0.098 3.902 29 H 0.262 0.738 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.406 0.594 43 H 0.171 0.829 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.171 -15.287 3.264 35.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.126 4.126 11 C -0.181 4.181 12 C 0.307 3.693 13 O -0.405 6.405 14 N -0.360 5.360 15 C -0.030 4.030 16 C -0.026 4.026 17 N -0.338 5.338 18 C 0.357 3.643 19 O -0.406 6.406 20 C -0.202 4.202 21 C -0.030 4.030 22 C -0.211 4.211 23 C 0.155 3.845 24 O -0.288 6.288 25 N -0.222 5.222 26 C -0.001 4.001 27 C -0.043 4.043 28 C -0.026 4.026 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.168 0.832 41 H 0.168 0.832 42 H 0.265 0.735 43 H 0.188 0.812 44 H 0.102 0.898 45 H 0.118 0.882 46 H 0.126 0.874 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 31.220 -15.917 3.293 35.198 hybrid contribution 1.142 1.426 -0.195 1.837 sum 32.362 -14.491 3.097 35.593 Atomic orbital electron populations 1.69922 1.06306 1.26804 1.51252 1.25057 0.94750 0.99157 0.94696 0.86762 0.80308 0.83653 0.78410 1.20360 1.21442 1.19046 1.21156 0.89506 0.94541 1.50530 0.90944 1.19605 0.97367 0.92090 0.96097 1.21281 0.89062 0.99638 1.02580 1.21915 1.00786 0.91794 1.03587 1.21255 0.80735 0.92817 0.74470 1.90697 1.54432 1.46761 1.48605 1.48190 1.06018 1.06298 1.75506 1.22229 0.91123 0.91196 0.98412 1.22198 0.98714 0.82652 0.99071 1.47942 1.05042 1.07844 1.72952 1.17981 0.81965 0.87924 0.76424 1.90819 1.54837 1.45475 1.49511 1.20935 1.00092 0.95837 1.03330 1.21578 0.91909 0.94928 0.94630 1.22122 1.02760 0.93638 1.02580 1.19441 0.89460 0.84318 0.91267 1.84722 1.63894 1.21832 1.58376 1.67252 1.14059 1.16379 1.24484 1.22954 0.96802 0.86561 0.93750 1.22632 0.91196 0.90179 1.00250 1.21904 0.98268 0.85052 0.97374 0.92783 0.96649 0.97107 0.92076 0.92039 0.89257 0.89279 0.90712 0.87601 0.90131 0.87422 0.83205 0.83198 0.73452 0.81241 0.89751 0.88240 0.87376 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.75 4.44 -26.74 -0.12 -1.87 16 11 C -0.14 -2.05 4.04 -27.88 -0.11 -2.16 16 12 C 0.52 7.46 7.70 -10.98 -0.08 7.38 16 13 O -0.53 -9.74 15.39 5.55 0.09 -9.66 16 14 N -0.62 -6.58 2.94 -172.18 -0.51 -7.09 16 15 C 0.09 0.75 6.53 -3.37 -0.02 0.73 16 16 C 0.10 0.72 6.62 -3.37 -0.02 0.70 16 17 N -0.60 -4.70 2.95 -173.39 -0.51 -5.21 16 18 C 0.57 5.10 7.35 -12.43 -0.09 5.01 16 19 O -0.53 -6.34 16.33 5.29 0.09 -6.26 16 20 C -0.20 -1.44 5.21 -104.82 -0.55 -1.99 16 21 C 0.00 -0.03 9.77 -38.92 -0.38 -0.41 16 22 C -0.19 -1.00 10.02 -39.34 -0.39 -1.40 16 23 C 0.33 2.29 7.74 -16.96 -0.13 2.15 16 24 O -0.48 -2.68 13.55 -18.19 -0.25 -2.93 16 25 N -0.50 -4.12 10.37 -12.97 -0.13 -4.25 16 26 C 0.16 1.10 8.53 -17.14 -0.15 0.95 16 27 C 0.08 0.55 5.05 -3.58 -0.02 0.53 16 28 C 0.10 0.87 6.59 -3.58 -0.02 0.85 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 31 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 32 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 33 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.09 1.12 7.73 -51.93 -0.40 0.71 16 35 H 0.09 1.14 7.90 -51.93 -0.41 0.73 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.75 5.91 -51.93 -0.31 0.44 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.83 6.99 -51.93 -0.36 0.47 16 40 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 42 H 0.41 0.21 9.06 45.56 0.41 0.62 16 43 H 0.17 0.90 6.41 -52.49 -0.34 0.57 16 44 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 45 H 0.10 0.57 4.55 -51.93 -0.24 0.34 16 46 H 0.11 1.11 6.99 -51.93 -0.36 0.75 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -38.26 383.96 -7.70 -45.96 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.73 Total: -2.32 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.63 Total: -3.51 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.38 Total: -43.92 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.26 -7.70 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327649187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.798 kcal (2) G-P(sol) polarization free energy of solvation -38.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds