Wall clock time and date at job start Wed Apr 1 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00196 * 2 1 4 4 H 1.48507 * 109.47121 * 270.00239 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.47264 * 150.00138 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00281 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00062 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47102 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47355 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99594 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00175 * 179.97438 * 12 11 10 15 15 C 1.46967 * 120.59354 * 359.72299 * 14 12 11 16 16 C 1.53807 * 108.39652 * 124.75498 * 15 14 12 17 17 N 1.46963 * 108.57796 * 49.64333 * 16 15 14 18 18 C 1.34774 * 120.59715 * 124.66651 * 17 16 15 19 19 O 1.21585 * 120.00270 * 354.15979 * 18 17 16 20 20 C 1.47620 * 120.00067 * 174.15483 * 18 17 16 21 21 C 1.40286 * 120.49453 * 141.70495 * 20 18 17 22 22 C 1.37955 * 118.35362 * 180.02562 * 21 20 18 23 23 C 1.39166 * 119.26530 * 359.97438 * 22 21 20 24 24 O 1.35498 * 119.52768 * 179.97438 * 23 22 21 25 25 N 1.32410 * 120.95044 * 0.02562 * 23 22 21 26 26 C 1.31671 * 121.79553 * 359.69846 * 25 23 22 27 27 C 1.46963 * 118.80836 * 304.63958 * 17 16 15 28 28 C 1.46962 * 120.59164 * 180.02562 * 14 12 11 29 29 H 0.96997 * 119.99971 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46875 * 60.00029 * 9 7 2 31 31 H 1.09007 * 109.47125 * 300.00283 * 9 7 2 32 32 H 1.08997 * 109.47498 * 60.00057 * 10 9 7 33 33 H 1.09005 * 109.47560 * 299.99896 * 10 9 7 34 34 H 1.09002 * 109.46882 * 60.00123 * 11 10 9 35 35 H 1.08997 * 109.47282 * 299.99905 * 11 10 9 36 36 H 1.09003 * 109.60870 * 244.54431 * 15 14 12 37 37 H 1.09004 * 109.61025 * 5.05180 * 15 14 12 38 38 H 1.08992 * 109.74653 * 289.84686 * 16 15 14 39 39 H 1.09002 * 109.67216 * 169.38436 * 16 15 14 40 40 H 1.07998 * 120.82529 * 0.02963 * 21 20 18 41 41 H 1.08002 * 120.36657 * 180.02562 * 22 21 20 42 42 H 0.96696 * 114.00522 * 89.99616 * 24 23 22 43 43 H 1.07996 * 119.68295 * 180.29157 * 26 25 23 44 44 H 1.09003 * 109.61218 * 295.48213 * 27 17 16 45 45 H 1.09004 * 109.60762 * 174.97377 * 27 17 16 46 46 H 1.08996 * 109.61197 * 354.95283 * 28 14 12 47 47 H 1.09007 * 109.60645 * 115.46284 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0538 -4.0575 0.0009 13 8 5.2656 -4.9794 0.0009 14 7 7.3789 -4.3039 0.0005 15 6 8.3454 -3.1968 -0.0067 16 6 9.2929 -3.3718 1.1922 17 7 9.7972 -4.7522 1.1928 18 6 11.1222 -4.9986 1.1924 19 8 11.9114 -4.0799 1.0845 20 6 11.6155 -6.3837 1.3233 21 6 12.7332 -6.8134 0.5923 22 6 13.1561 -8.1173 0.7480 23 6 12.4666 -8.9569 1.6178 24 8 12.8771 -10.2387 1.7742 25 7 11.4148 -8.5214 2.2939 26 6 10.9805 -7.2836 2.1797 27 6 8.8306 -5.8593 1.1944 28 6 7.8830 -5.6843 0.0007 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6798 0.8894 31 1 3.8746 -0.6809 -0.8905 32 1 3.6578 -3.1507 -0.8896 33 1 3.6585 -3.1503 0.8903 34 1 5.9147 -2.1228 0.8901 35 1 5.9149 -2.1229 -0.8899 36 1 8.9173 -3.2165 -0.9345 37 1 7.8157 -2.2480 0.0793 38 1 8.7533 -3.1790 2.1193 39 1 10.1284 -2.6773 1.1040 40 1 13.2499 -6.1401 -0.0756 41 1 14.0131 -8.4822 0.2014 42 1 13.5257 -10.3605 2.4809 43 1 10.1218 -6.9633 2.7510 44 1 8.2580 -5.8437 2.1217 45 1 9.3605 -6.8076 1.1047 46 1 7.0478 -6.3788 0.0914 47 1 8.4228 -5.8767 -0.9265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327649187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:04 Heat of formation + Delta-G solvation = -89.587706 kcal Electronic energy + Delta-G solvation = -29714.782824 eV Core-core repulsion = 25476.218135 eV Total energy + Delta-G solvation = -4238.564689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.17914 -41.24224 -40.36131 -38.22042 -38.01144 -36.15563 -35.33777 -34.14249 -33.74725 -32.84986 -31.63727 -30.25198 -28.77202 -26.03605 -25.58026 -25.03500 -24.28387 -23.43815 -22.07071 -21.21536 -19.95520 -19.88041 -18.96912 -18.73100 -18.05436 -17.78574 -17.14783 -16.93517 -16.88979 -16.86803 -16.37935 -16.17961 -15.75295 -15.63036 -15.36447 -14.87378 -14.69956 -14.63076 -14.46680 -14.35712 -13.95098 -13.86346 -13.72616 -13.39322 -13.18906 -12.90648 -12.89368 -12.63100 -12.51763 -12.43732 -12.40680 -11.76693 -11.68216 -11.47874 -11.36774 -11.28628 -11.12625 -10.78514 -10.73280 -10.57182 -10.40554 -10.04808 -9.44754 -8.25959 -6.31504 -0.53770 0.04739 1.40113 1.43515 1.44377 1.55440 1.59710 1.63454 2.04106 2.36076 2.40611 2.66891 3.09317 3.20091 3.48406 3.55222 3.68883 3.73573 3.78609 3.88409 4.08473 4.11997 4.13944 4.19130 4.23029 4.29956 4.36938 4.52462 4.58025 4.64309 4.73492 4.78478 4.83516 4.88052 4.92161 4.94004 4.96892 5.06305 5.24423 5.30762 5.43965 5.58593 5.62513 5.69843 6.08848 6.28575 6.34081 6.49153 6.73590 6.77462 6.88219 7.15132 7.32827 8.91626 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.001836 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.403585 B =15250.093398 C =15979.205368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.004 4.004 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.233 1.233 7 C -0.539 4.539 8 H 0.019 0.981 9 C -0.009 4.009 10 C -0.080 4.080 11 C -0.131 4.131 12 C 0.517 3.483 13 O -0.582 6.582 14 N -0.614 5.614 15 C 0.092 3.908 16 C 0.097 3.903 17 N -0.602 5.602 18 C 0.573 3.427 19 O -0.563 6.563 20 C -0.208 4.208 21 C -0.006 4.006 22 C -0.181 4.181 23 C 0.327 3.673 24 O -0.490 6.490 25 N -0.530 5.530 26 C 0.158 3.842 27 C 0.091 3.909 28 C 0.095 3.905 29 H 0.266 0.734 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.159 0.841 41 H 0.176 0.824 42 H 0.426 0.574 43 H 0.181 0.819 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.898 -14.033 3.300 38.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.155 1.155 7 C -0.577 4.577 8 H 0.037 0.963 9 C -0.047 4.047 10 C -0.119 4.119 11 C -0.171 4.171 12 C 0.307 3.693 13 O -0.461 6.461 14 N -0.348 5.348 15 C -0.030 4.030 16 C -0.026 4.026 17 N -0.334 5.334 18 C 0.362 3.638 19 O -0.443 6.443 20 C -0.213 4.213 21 C -0.032 4.032 22 C -0.202 4.202 23 C 0.149 3.851 24 O -0.302 6.302 25 N -0.249 5.249 26 C 0.000 4.000 27 C -0.033 4.033 28 C -0.029 4.029 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.177 0.823 41 H 0.193 0.807 42 H 0.289 0.711 43 H 0.198 0.802 44 H 0.109 0.891 45 H 0.130 0.870 46 H 0.110 0.890 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 35.011 -14.691 3.342 38.115 hybrid contribution -0.038 0.873 -0.208 0.899 sum 34.974 -13.817 3.134 37.735 Atomic orbital electron populations 1.70111 1.08714 1.28225 1.52763 1.26208 0.95741 1.04149 0.93930 0.85506 0.79788 0.77047 0.79338 1.19031 1.21403 1.15546 1.21572 0.92812 0.92763 1.50584 0.96304 1.19551 0.93366 0.94368 0.97387 1.21044 0.93466 0.97098 1.00262 1.21771 0.96257 0.92650 1.06385 1.21197 0.81693 0.92195 0.74191 1.90689 1.56074 1.47996 1.51386 1.48164 1.05165 1.07813 1.73616 1.22456 0.90695 0.90780 0.99108 1.22240 0.98623 0.82494 0.99219 1.47990 1.04902 1.08250 1.72263 1.18150 0.81921 0.88114 0.75630 1.90800 1.55627 1.46533 1.51309 1.20880 1.00956 0.95131 1.04336 1.21775 0.91499 0.95483 0.94460 1.22317 1.03040 0.92944 1.01896 1.19682 0.89319 0.84785 0.91277 1.84675 1.64673 1.21311 1.59524 1.67261 1.15093 1.16958 1.25572 1.23073 0.97032 0.86218 0.93672 1.22596 0.90653 0.90508 0.99507 1.22008 0.98113 0.83882 0.98856 0.92581 0.94934 0.95266 0.94679 0.94440 0.86198 0.86538 0.89782 0.85986 0.89292 0.87326 0.82297 0.80690 0.71115 0.80193 0.89064 0.86996 0.88969 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.50 13.96 21.45 0.30 -61.20 16 2 C 0.00 -0.27 5.47 84.65 0.46 0.20 16 3 Si 0.96 43.28 27.47 68.60 1.88 45.16 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.23 -9.19 6.54 99.48 0.65 -8.54 16 7 C -0.54 -32.01 9.66 25.60 0.25 -31.76 16 8 H 0.02 1.26 7.99 -2.91 -0.02 1.24 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.08 -3.23 4.44 30.59 0.14 -3.09 16 11 C -0.13 -3.47 4.04 29.85 0.12 -3.35 16 12 C 0.52 14.29 7.70 87.66 0.67 14.96 16 13 O -0.58 -21.84 15.39 -3.05 -0.05 -21.89 16 14 N -0.61 -11.67 2.94 -817.06 -2.40 -14.07 16 15 C 0.09 1.16 6.53 86.56 0.57 1.72 16 16 C 0.10 1.18 6.62 86.56 0.57 1.75 16 17 N -0.60 -8.08 2.95 -820.74 -2.42 -10.50 16 18 C 0.57 9.31 7.35 86.72 0.64 9.95 16 19 O -0.56 -12.71 16.33 -3.98 -0.07 -12.77 16 20 C -0.21 -2.73 5.21 -19.99 -0.10 -2.84 16 21 C -0.01 -0.07 9.77 22.70 0.22 0.16 16 22 C -0.18 -1.53 10.02 22.43 0.22 -1.30 16 23 C 0.33 3.96 7.74 84.83 0.66 4.61 16 24 O -0.49 -4.66 13.55 -87.99 -1.19 -5.86 16 25 N -0.53 -8.02 10.37 -307.82 -3.19 -11.21 16 26 C 0.16 1.98 8.53 85.03 0.73 2.71 16 27 C 0.09 1.07 5.05 86.43 0.44 1.51 16 28 C 0.09 1.56 6.59 86.43 0.57 2.13 16 29 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 31 H 0.03 1.23 7.57 -2.38 -0.02 1.21 16 32 H 0.03 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 34 H 0.12 2.47 7.73 -2.39 -0.02 2.45 16 35 H 0.12 2.48 7.90 -2.39 -0.02 2.47 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 1.17 5.91 -2.38 -0.01 1.16 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 1.39 6.99 -2.39 -0.02 1.38 16 40 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 42 H 0.43 -0.29 9.06 -74.06 -0.67 -0.96 16 43 H 0.18 1.66 6.41 -2.91 -0.02 1.64 16 44 H 0.09 1.01 8.13 -2.39 -0.02 0.99 16 45 H 0.11 1.10 4.55 -2.39 -0.01 1.09 16 46 H 0.09 1.88 6.99 -2.39 -0.02 1.87 16 47 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -87.17 383.96 -0.58 -87.75 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.29 Total: 7.54 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 6.27 Total: -2.95 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -7.71 Total: -96.98 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.30 Total: -40.52 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -87.17 -0.58 -87.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327649187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.842 kcal (2) G-P(sol) polarization free energy of solvation -87.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds