Wall clock time and date at job start Wed Apr 1 2020 04:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99693 * 2 1 4 4 H 1.48501 * 109.46889 * 239.99744 * 3 2 1 5 5 H 1.48493 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46907 * 120.00028 * 3 2 1 7 7 C 1.37874 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00391 * 359.72505 * 7 2 1 10 10 H 1.09000 * 109.49815 * 60.27605 * 9 7 2 11 11 C 1.53043 * 109.49861 * 180.34183 * 9 7 2 12 12 C 1.53036 * 109.53781 * 181.28187 * 11 9 7 13 13 C 1.53197 * 109.34037 * 298.68543 * 12 11 9 14 14 N 1.46923 * 108.77603 * 54.62030 * 13 12 11 15 15 C 1.34768 * 120.63140 * 126.41596 * 14 13 12 16 16 O 1.21356 * 120.00140 * 173.06142 * 15 14 13 17 17 C 1.49446 * 120.00057 * 353.06161 * 15 14 13 18 18 O 1.21350 * 120.00387 * 353.37697 * 17 15 14 19 19 N 1.34782 * 120.00084 * 173.37736 * 17 15 14 20 20 C 1.46502 * 120.00166 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.47360 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.47222 * 64.99823 * 21 20 19 23 23 C 1.35908 * 117.00137 * 180.02562 * 22 21 20 24 24 C 1.39139 * 120.47583 * 180.02562 * 23 22 21 25 25 C 1.38534 * 118.37561 * 180.02562 * 24 23 22 26 26 C 1.38254 * 119.22244 * 359.97438 * 25 24 23 27 27 N 1.31855 * 120.88387 * 0.02562 * 26 25 24 28 28 C 1.31842 * 121.78148 * 359.69795 * 27 26 25 29 29 C 1.46927 * 118.73556 * 306.38909 * 14 13 12 30 30 H 0.97000 * 120.00590 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.45764 * 301.33967 * 11 9 7 32 32 H 1.09001 * 109.46036 * 61.29815 * 11 9 7 33 33 H 1.08995 * 109.49669 * 178.71286 * 12 11 9 34 34 H 1.09009 * 109.47168 * 58.63626 * 12 11 9 35 35 H 1.08998 * 109.57952 * 294.83077 * 13 12 11 36 36 H 1.09003 * 109.69903 * 174.47809 * 13 12 11 37 37 H 0.96996 * 119.99775 * 0.02562 * 19 17 15 38 38 H 1.09007 * 109.47072 * 300.00583 * 20 19 17 39 39 H 1.09010 * 109.46729 * 59.99889 * 20 19 17 40 40 H 1.08999 * 109.47151 * 185.00325 * 21 20 19 41 41 H 1.09005 * 109.46911 * 304.99894 * 21 20 19 42 42 H 1.07997 * 120.80742 * 359.97438 * 24 23 22 43 43 H 1.07998 * 120.38948 * 180.02562 * 25 24 23 44 44 H 1.07991 * 119.56017 * 179.97438 * 26 25 24 45 45 H 1.07997 * 119.65655 * 180.29233 * 28 27 26 46 46 H 1.09003 * 109.59192 * 293.82315 * 29 14 13 47 47 H 1.08998 * 109.70190 * 173.47043 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0074 10 1 0.6243 -2.5621 -0.8821 11 6 2.2451 -3.6628 0.0152 12 6 1.4812 -4.9886 -0.0101 13 6 0.6040 -5.0927 1.2415 14 7 -0.2547 -3.9030 1.3174 15 6 -1.5912 -4.0274 1.4387 16 8 -2.2775 -3.0444 1.6269 17 6 -2.2280 -5.3759 1.3416 18 8 -1.5603 -6.3416 1.0347 19 7 -3.5440 -5.5196 1.5947 20 6 -4.1684 -6.8414 1.4990 21 6 -5.6573 -6.7275 1.8323 22 8 -6.3077 -5.9294 0.8412 23 6 -7.6434 -5.7279 0.9904 24 6 -8.3491 -4.9627 0.0671 25 6 -9.7091 -4.7850 0.2617 26 6 -10.3162 -5.3694 1.3577 27 7 -9.6183 -6.0890 2.2143 28 6 -8.3237 -6.2866 2.0623 29 6 0.3713 -2.5751 1.2592 30 1 -0.4851 0.8400 -0.0004 31 1 2.8882 -3.5968 -0.8624 32 1 2.8553 -3.6131 0.9170 33 1 2.1899 -5.8165 -0.0277 34 1 0.8523 -5.0287 -0.8996 35 1 1.2366 -5.1441 2.1277 36 1 -0.0156 -5.9876 1.1825 37 1 -4.0778 -4.7476 1.8396 38 1 -4.0516 -7.2258 0.4856 39 1 -3.6890 -7.5215 2.2031 40 1 -6.1032 -7.7220 1.8481 41 1 -5.7760 -6.2606 2.8101 42 1 -7.8485 -4.5176 -0.7800 43 1 -10.2885 -4.1975 -0.4351 44 1 -11.3760 -5.2340 1.5149 45 1 -7.7865 -6.8861 2.7824 46 1 0.9849 -2.4210 2.1469 47 1 -0.4003 -1.8068 1.2107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328886480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:06 Heat of formation + Delta-G solvation = -54.132406 kcal Electronic energy + Delta-G solvation = -29968.658173 eV Core-core repulsion = 25731.630941 eV Total energy + Delta-G solvation = -4237.027232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02945 -40.50837 -38.80451 -38.17311 -36.87213 -35.23778 -33.25884 -32.75603 -31.74212 -31.00091 -29.81464 -29.72572 -26.11520 -25.03579 -24.62749 -23.68768 -22.96473 -21.89334 -21.79603 -20.29139 -18.84716 -18.80680 -17.47874 -17.14190 -17.02058 -16.81765 -16.30671 -16.00646 -15.70774 -15.24049 -14.89640 -14.80506 -14.56970 -14.28150 -13.94394 -13.78588 -13.76837 -13.39108 -13.25558 -13.14771 -12.76786 -12.59330 -12.50862 -12.23220 -12.08203 -11.77728 -11.74680 -11.39616 -10.97000 -10.72353 -10.47804 -10.28072 -10.10480 -10.07185 -9.89619 -9.84514 -9.37722 -9.22868 -9.11941 -8.86742 -8.54838 -8.42454 -7.83598 -6.02462 -4.10749 0.71972 0.90746 1.75206 2.53896 2.65489 3.31065 3.36688 3.38296 3.41814 3.61779 3.91762 4.05046 4.16510 4.32432 4.41152 4.52274 4.53155 4.65527 4.68378 4.74498 4.92525 5.13729 5.21346 5.27971 5.36267 5.57628 5.62564 5.68728 5.73190 5.84039 6.02775 6.10817 6.24574 6.38766 6.57994 6.60505 6.73473 6.78258 6.85850 6.98965 7.02581 7.16685 7.18765 7.55380 7.58402 7.81951 7.94076 7.95449 8.14952 8.34484 8.56217 8.93064 9.54740 11.03112 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.002236 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.018735 B =12518.303165 C =14162.459887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.127 4.127 13 C 0.050 3.950 14 N -0.566 5.566 15 C 0.495 3.505 16 O -0.524 6.524 17 C 0.514 3.486 18 O -0.514 6.514 19 N -0.703 5.703 20 C 0.121 3.879 21 C 0.042 3.958 22 O -0.303 6.303 23 C 0.083 3.917 24 C -0.106 4.106 25 C -0.131 4.131 26 C 0.057 3.943 27 N -0.452 5.452 28 C 0.015 3.985 29 C 0.108 3.892 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.143 0.857 37 H 0.416 0.584 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.048 0.952 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.134 -15.508 3.536 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.166 4.166 13 C -0.072 4.072 14 N -0.298 5.298 15 C 0.275 3.725 16 O -0.401 6.401 17 C 0.297 3.703 18 O -0.392 6.392 19 N -0.357 5.357 20 C -0.002 4.002 21 C -0.033 4.033 22 O -0.216 6.216 23 C 0.035 3.965 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.100 4.100 27 N -0.161 5.161 28 C -0.143 4.143 29 C -0.012 4.012 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.253 0.747 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.175 0.825 45 H 0.175 0.825 46 H 0.066 0.934 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.435 -15.842 3.988 23.173 hybrid contribution 0.729 1.608 -0.484 1.830 sum -15.706 -14.234 3.504 21.484 Atomic orbital electron populations 1.69857 1.05783 1.27008 1.49412 1.25061 0.94911 0.99315 0.94786 0.86622 0.79557 0.83014 0.78614 1.20255 1.21250 1.20219 1.21058 0.92944 0.90039 1.51745 0.92290 1.18971 0.92682 0.92529 0.93667 0.95272 1.21664 0.98536 0.94391 1.00493 1.21855 0.98402 0.98519 0.97791 1.23077 0.95278 0.90971 0.97837 1.48441 1.04308 1.10224 1.66848 1.19713 0.83968 0.88218 0.80563 1.90767 1.62041 1.38786 1.48497 1.20804 0.82462 0.90257 0.76806 1.90308 1.60242 1.41491 1.47144 1.45770 1.09224 1.11386 1.69338 1.21491 0.88970 0.85537 1.04238 1.23210 0.92451 0.95982 0.91664 1.86173 1.17852 1.68050 1.49488 1.20066 0.84007 0.96612 0.95828 1.21048 0.93895 0.98786 0.99567 1.22064 0.94271 0.99692 0.99001 1.22683 1.00447 0.95510 0.91390 1.67525 1.07108 1.13498 1.27989 1.22928 0.91547 1.02234 0.97617 1.22493 0.98837 0.80728 0.99113 0.92566 0.93067 0.93255 0.92275 0.92343 0.92733 0.84035 0.74707 0.89605 0.88457 0.89635 0.90552 0.83710 0.83935 0.82495 0.82515 0.93377 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 11.38 55.43 0.63 -24.87 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.08 8.57 -34.44 -0.30 -14.38 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.34 5.11 -26.69 -0.14 -2.47 16 12 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 13 C 0.05 0.89 6.27 -3.71 -0.02 0.86 16 14 N -0.57 -11.81 2.97 -173.27 -0.51 -12.33 16 15 C 0.49 9.93 7.74 -11.59 -0.09 9.84 16 16 O -0.52 -11.91 15.95 5.49 0.09 -11.83 16 17 C 0.51 8.21 7.78 -11.58 -0.09 8.12 16 18 O -0.51 -8.43 13.10 5.50 0.07 -8.36 16 19 N -0.70 -8.59 5.49 -60.72 -0.33 -8.92 16 20 C 0.12 1.02 6.06 -4.04 -0.02 0.99 16 21 C 0.04 0.27 4.88 37.16 0.18 0.46 16 22 O -0.30 -2.86 10.10 -19.45 -0.20 -3.06 16 23 C 0.08 0.77 6.71 -39.07 -0.26 0.51 16 24 C -0.11 -0.92 10.13 -39.14 -0.40 -1.32 16 25 C -0.13 -0.93 10.11 -39.47 -0.40 -1.33 16 26 C 0.06 0.45 11.18 -17.54 -0.20 0.26 16 27 N -0.45 -4.47 10.36 -13.13 -0.14 -4.61 16 28 C 0.01 0.13 10.22 -17.37 -0.18 -0.05 16 29 C 0.11 2.63 5.38 -3.71 -0.02 2.61 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.14 2.41 3.78 -56.75 -0.21 2.19 16 37 H 0.42 5.08 7.96 -40.82 -0.32 4.76 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.09 0.35 7.67 -51.93 -0.40 -0.05 16 41 H 0.08 0.41 7.69 -51.93 -0.40 0.02 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.16 1.01 6.32 -52.49 -0.33 0.68 16 46 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -33.14 386.06 -8.54 -41.68 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.55 Total: 6.23 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.39 Total: 4.09 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.35 Total: -50.73 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.14 -8.54 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328886480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.456 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds