Wall clock time and date at job start Wed Apr 1 2020 04:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99693 * 2 1 4 4 H 1.48501 * 109.46889 * 239.99744 * 3 2 1 5 5 H 1.48493 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46907 * 120.00028 * 3 2 1 7 7 C 1.37874 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00391 * 359.72505 * 7 2 1 10 10 H 1.09000 * 109.49815 * 60.27605 * 9 7 2 11 11 C 1.53043 * 109.49861 * 180.34183 * 9 7 2 12 12 C 1.53036 * 109.53781 * 181.28187 * 11 9 7 13 13 C 1.53197 * 109.34037 * 298.68543 * 12 11 9 14 14 N 1.46923 * 108.77603 * 54.62030 * 13 12 11 15 15 C 1.34768 * 120.63140 * 126.41596 * 14 13 12 16 16 O 1.21356 * 120.00140 * 173.06142 * 15 14 13 17 17 C 1.49446 * 120.00057 * 353.06161 * 15 14 13 18 18 O 1.21350 * 120.00387 * 353.37697 * 17 15 14 19 19 N 1.34782 * 120.00084 * 173.37736 * 17 15 14 20 20 C 1.46502 * 120.00166 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.47360 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.47222 * 64.99823 * 21 20 19 23 23 C 1.35908 * 117.00137 * 180.02562 * 22 21 20 24 24 C 1.39139 * 120.47583 * 180.02562 * 23 22 21 25 25 C 1.38534 * 118.37561 * 180.02562 * 24 23 22 26 26 C 1.38254 * 119.22244 * 359.97438 * 25 24 23 27 27 N 1.31855 * 120.88387 * 0.02562 * 26 25 24 28 28 C 1.31842 * 121.78148 * 359.69795 * 27 26 25 29 29 C 1.46927 * 118.73556 * 306.38909 * 14 13 12 30 30 H 0.97000 * 120.00590 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.45764 * 301.33967 * 11 9 7 32 32 H 1.09001 * 109.46036 * 61.29815 * 11 9 7 33 33 H 1.08995 * 109.49669 * 178.71286 * 12 11 9 34 34 H 1.09009 * 109.47168 * 58.63626 * 12 11 9 35 35 H 1.08998 * 109.57952 * 294.83077 * 13 12 11 36 36 H 1.09003 * 109.69903 * 174.47809 * 13 12 11 37 37 H 0.96996 * 119.99775 * 0.02562 * 19 17 15 38 38 H 1.09007 * 109.47072 * 300.00583 * 20 19 17 39 39 H 1.09010 * 109.46729 * 59.99889 * 20 19 17 40 40 H 1.08999 * 109.47151 * 185.00325 * 21 20 19 41 41 H 1.09005 * 109.46911 * 304.99894 * 21 20 19 42 42 H 1.07997 * 120.80742 * 359.97438 * 24 23 22 43 43 H 1.07998 * 120.38948 * 180.02562 * 25 24 23 44 44 H 1.07991 * 119.56017 * 179.97438 * 26 25 24 45 45 H 1.07997 * 119.65655 * 180.29233 * 28 27 26 46 46 H 1.09003 * 109.59192 * 293.82315 * 29 14 13 47 47 H 1.08998 * 109.70190 * 173.47043 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0074 10 1 0.6243 -2.5621 -0.8821 11 6 2.2451 -3.6628 0.0152 12 6 1.4812 -4.9886 -0.0101 13 6 0.6040 -5.0927 1.2415 14 7 -0.2547 -3.9030 1.3174 15 6 -1.5912 -4.0274 1.4387 16 8 -2.2775 -3.0444 1.6269 17 6 -2.2280 -5.3759 1.3416 18 8 -1.5603 -6.3416 1.0347 19 7 -3.5440 -5.5196 1.5947 20 6 -4.1684 -6.8414 1.4990 21 6 -5.6573 -6.7275 1.8323 22 8 -6.3077 -5.9294 0.8412 23 6 -7.6434 -5.7279 0.9904 24 6 -8.3491 -4.9627 0.0671 25 6 -9.7091 -4.7850 0.2617 26 6 -10.3162 -5.3694 1.3577 27 7 -9.6183 -6.0890 2.2143 28 6 -8.3237 -6.2866 2.0623 29 6 0.3713 -2.5751 1.2592 30 1 -0.4851 0.8400 -0.0004 31 1 2.8882 -3.5968 -0.8624 32 1 2.8553 -3.6131 0.9170 33 1 2.1899 -5.8165 -0.0277 34 1 0.8523 -5.0287 -0.8996 35 1 1.2366 -5.1441 2.1277 36 1 -0.0156 -5.9876 1.1825 37 1 -4.0778 -4.7476 1.8396 38 1 -4.0516 -7.2258 0.4856 39 1 -3.6890 -7.5215 2.2031 40 1 -6.1032 -7.7220 1.8481 41 1 -5.7760 -6.2606 2.8101 42 1 -7.8485 -4.5176 -0.7800 43 1 -10.2885 -4.1975 -0.4351 44 1 -11.3760 -5.2340 1.5149 45 1 -7.7865 -6.8861 2.7824 46 1 0.9849 -2.4210 2.1469 47 1 -0.4003 -1.8068 1.2107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328886480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:05 Heat of formation + Delta-G solvation = -77.647339 kcal Electronic energy + Delta-G solvation = -29969.677857 eV Core-core repulsion = 25731.630941 eV Total energy + Delta-G solvation = -4238.046916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98990 -41.55824 -39.91036 -39.17310 -38.53549 -36.31994 -35.14409 -33.48801 -33.36390 -31.69707 -31.57099 -30.52162 -27.68123 -26.84109 -25.53479 -24.42260 -23.99299 -23.50434 -22.77800 -21.71799 -20.47757 -19.42085 -18.95455 -18.26274 -18.06406 -17.71754 -17.50197 -17.26997 -16.96919 -16.55119 -16.41256 -15.90598 -15.67760 -15.47460 -15.30413 -14.84944 -14.80473 -14.55849 -14.45087 -14.36020 -14.08910 -13.95221 -13.73080 -13.45786 -13.07895 -13.06969 -12.85958 -12.76442 -12.52626 -12.31179 -12.29034 -12.17551 -11.71692 -11.61890 -11.17505 -10.98858 -10.70641 -10.55365 -10.47247 -10.39659 -10.00373 -9.55134 -9.47736 -8.12924 -6.29612 0.13521 0.27517 0.34239 1.33263 1.41664 1.43771 1.51198 2.00395 2.14961 2.40667 2.57620 2.81333 3.15180 3.30752 3.49862 3.59024 3.73773 3.99807 4.01587 4.09811 4.15733 4.19230 4.26755 4.35018 4.36465 4.57289 4.60341 4.62682 4.69421 4.73379 4.81761 4.81993 4.98931 5.05457 5.15174 5.15280 5.23665 5.27064 5.39068 5.51670 5.55824 5.56710 5.83172 5.92496 5.95622 6.19032 6.28541 6.43977 6.71747 6.82226 6.95079 6.97932 7.40246 8.90918 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.002236 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.018735 B =12518.303165 C =14162.459887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.012 1.012 11 C -0.107 4.107 12 C -0.121 4.121 13 C 0.049 3.951 14 N -0.575 5.575 15 C 0.483 3.517 16 O -0.561 6.561 17 C 0.523 3.477 18 O -0.517 6.517 19 N -0.687 5.687 20 C 0.118 3.882 21 C 0.041 3.959 22 O -0.324 6.324 23 C 0.070 3.930 24 C -0.126 4.126 25 C -0.126 4.126 26 C 0.049 3.951 27 N -0.478 5.478 28 C 0.007 3.993 29 C 0.121 3.879 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.416 0.584 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.170 0.830 44 H 0.181 0.819 45 H 0.177 0.823 46 H 0.044 0.956 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.139 -17.321 4.111 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.006 0.994 11 C -0.144 4.144 12 C -0.159 4.159 13 C -0.071 4.071 14 N -0.306 5.306 15 C 0.266 3.734 16 O -0.440 6.440 17 C 0.304 3.696 18 O -0.396 6.396 19 N -0.339 5.339 20 C -0.003 4.003 21 C -0.034 4.034 22 O -0.237 6.237 23 C 0.023 3.977 24 C -0.153 4.153 25 C -0.145 4.145 26 C -0.109 4.109 27 N -0.188 5.188 28 C -0.150 4.150 29 C -0.001 4.001 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.253 0.747 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.164 0.836 43 H 0.188 0.812 44 H 0.198 0.802 45 H 0.194 0.806 46 H 0.062 0.938 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.447 -17.707 4.567 24.595 hybrid contribution 0.645 2.152 -0.684 2.348 sum -15.802 -15.555 3.883 22.511 Atomic orbital electron populations 1.70043 1.07393 1.27492 1.50498 1.25896 0.95628 1.02929 0.94447 0.85583 0.78269 0.78597 0.79069 1.19415 1.21319 1.19188 1.21461 0.93338 0.91277 1.51338 0.91874 1.18912 0.93115 0.93976 0.92075 0.99434 1.21558 0.97713 0.94174 1.00982 1.21826 0.98677 0.98084 0.97286 1.23336 0.95337 0.89904 0.98507 1.48470 1.05272 1.09833 1.67010 1.20534 0.83631 0.89920 0.79308 1.90736 1.62779 1.40664 1.49860 1.19861 0.83699 0.88043 0.77954 1.90279 1.60605 1.40588 1.48110 1.45809 1.07709 1.13207 1.67212 1.21830 0.90153 0.83468 1.04895 1.23388 0.90953 0.97487 0.91535 1.86136 1.18092 1.68817 1.50651 1.20195 0.84032 0.97162 0.96332 1.21327 0.94840 0.99224 0.99892 1.22364 0.93822 0.99210 0.99122 1.23162 1.01589 0.94927 0.91191 1.67556 1.07719 1.14530 1.28986 1.23219 0.91479 1.02408 0.97888 1.21938 0.97547 0.82063 0.98530 0.92956 0.92835 0.92387 0.88284 0.93630 0.91025 0.82610 0.74685 0.89894 0.86004 0.86558 0.89256 0.83610 0.81249 0.80157 0.80568 0.93787 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 11.38 21.45 0.24 -54.88 16 2 C 0.01 0.59 5.30 84.65 0.45 1.04 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -29.66 8.57 25.60 0.22 -29.44 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 10 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 11 C -0.11 -4.34 5.11 30.62 0.16 -4.18 16 12 C -0.12 -4.09 6.08 30.67 0.19 -3.90 16 13 C 0.05 1.67 6.27 86.36 0.54 2.21 16 14 N -0.57 -24.31 2.97 -820.48 -2.44 -26.75 16 15 C 0.48 19.82 7.74 87.27 0.68 20.50 16 16 O -0.56 -26.68 15.95 -3.27 -0.05 -26.73 16 17 C 0.52 16.30 7.78 87.27 0.68 16.98 16 18 O -0.52 -15.99 13.10 -3.25 -0.04 -16.03 16 19 N -0.69 -16.01 5.49 -464.39 -2.55 -18.57 16 20 C 0.12 1.71 6.06 86.38 0.52 2.24 16 21 C 0.04 0.44 4.88 71.98 0.35 0.79 16 22 O -0.32 -5.79 10.10 -92.51 -0.93 -6.73 16 23 C 0.07 1.26 6.71 22.60 0.15 1.41 16 24 C -0.13 -2.14 10.13 22.56 0.23 -1.91 16 25 C -0.13 -1.64 10.11 22.34 0.23 -1.42 16 26 C 0.05 0.71 11.18 84.69 0.95 1.65 16 27 N -0.48 -8.94 10.36 -195.44 -2.02 -10.96 16 28 C 0.01 0.12 10.22 84.80 0.87 0.99 16 29 C 0.12 6.12 5.38 86.36 0.46 6.58 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.16 4.95 3.78 -78.73 -0.30 4.65 16 37 H 0.42 9.99 7.96 -92.71 -0.74 9.25 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.12 0.58 7.67 -2.39 -0.02 0.56 16 41 H 0.09 0.75 7.69 -2.38 -0.02 0.73 16 42 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.18 1.55 8.06 -2.92 -0.02 1.52 16 45 H 0.18 1.92 6.32 -2.91 -0.02 1.90 16 46 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.08 4.95 5.17 -2.39 -0.01 4.94 16 Total: -1.00 -75.24 386.06 0.85 -74.39 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.02 Total: 24.65 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.64 Total: 15.49 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -6.77 Total: -111.15 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.03 Total: -49.49 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -75.24 0.85 -74.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328886480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.254 kcal (2) G-P(sol) polarization free energy of solvation -75.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds