Wall clock time and date at job start Wed Apr 1 2020 04:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 119.99798 * 2 1 4 4 H 1.48502 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48488 * 109.47314 * 299.99774 * 3 2 1 6 6 H 1.48502 * 109.47024 * 60.00062 * 3 2 1 7 7 C 1.38655 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00466 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.35745 * 116.99847 * 185.05566 * 9 7 2 11 11 C 1.38901 * 120.07249 * 354.44565 * 10 9 7 12 12 C 1.38077 * 119.93119 * 180.02562 * 11 10 9 13 13 C 1.38314 * 120.07022 * 359.73874 * 12 11 10 14 14 C 1.38285 * 120.13981 * 0.51214 * 13 12 11 15 15 C 1.50698 * 119.96645 * 179.76315 * 14 13 12 16 16 N 1.46500 * 109.47313 * 269.72696 * 15 14 13 17 17 C 1.34773 * 119.99881 * 180.02562 * 16 15 14 18 18 O 1.21583 * 120.00264 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00045 * 180.27508 * 17 16 15 20 20 C 1.46503 * 120.00545 * 179.72344 * 19 17 16 21 21 C 1.52995 * 109.47374 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.46941 * 179.97438 * 21 20 19 23 23 H 1.09005 * 110.85545 * 305.69927 * 22 21 20 24 24 C 1.54480 * 110.96822 * 181.91003 * 22 21 20 25 25 N 1.46766 * 105.47274 * 216.46302 * 24 22 21 26 26 C 1.34418 * 111.30128 * 17.02149 * 25 24 22 27 27 O 1.21282 * 124.94580 * 179.58506 * 26 25 24 28 28 C 1.51340 * 110.12940 * 359.55478 * 26 25 24 29 29 C 1.38126 * 120.06564 * 359.49575 * 14 13 12 30 30 H 0.97003 * 120.00283 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.03189 * 0.03898 * 11 10 9 32 32 H 1.08002 * 119.96244 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.93530 * 180.26224 * 13 12 11 34 34 H 1.09000 * 109.46904 * 149.73035 * 15 14 13 35 35 H 1.08998 * 109.46894 * 29.72886 * 15 14 13 36 36 H 0.96996 * 119.99961 * 0.02562 * 16 15 14 37 37 H 0.97006 * 119.99726 * 359.72243 * 19 17 16 38 38 H 1.09007 * 109.46800 * 300.00164 * 20 19 17 39 39 H 1.09003 * 109.46758 * 59.99344 * 20 19 17 40 40 H 1.08993 * 109.47061 * 299.99687 * 21 20 19 41 41 H 1.08998 * 109.47160 * 59.99914 * 21 20 19 42 42 H 1.08997 * 110.24815 * 335.46592 * 24 22 21 43 43 H 1.09000 * 110.24516 * 97.46663 * 24 22 21 44 44 H 0.97003 * 124.35402 * 197.03325 * 25 24 22 45 45 H 1.08996 * 110.52498 * 225.12413 * 28 26 25 46 46 H 1.09000 * 110.47762 * 102.45852 * 28 26 25 47 47 H 1.07994 * 120.03402 * 180.27471 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4574 -3.4395 0.0948 12 6 4.2024 -4.5969 0.2034 13 6 3.5686 -5.8197 0.3304 14 6 2.1875 -5.8884 0.3383 15 6 1.5010 -7.2233 0.4715 16 7 1.2715 -7.7895 -0.8601 17 6 0.6662 -8.9868 -0.9880 18 8 0.3110 -9.5973 0.0016 19 7 0.4601 -9.5103 -2.2128 20 6 -0.1924 -10.8146 -2.3517 21 6 -0.3027 -11.1743 -3.8347 22 6 -0.9837 -12.5367 -3.9797 23 1 -0.4667 -13.2937 -3.3898 24 6 -1.0702 -12.9563 -5.4639 25 7 -2.3569 -13.6489 -5.6006 26 6 -3.1689 -13.3799 -4.5637 27 8 -4.2925 -13.8163 -4.4297 28 6 -2.4769 -12.4537 -3.5870 29 6 1.4366 -4.7342 0.2299 30 1 -0.4851 0.8400 -0.0004 31 1 3.9528 -2.4845 0.0002 32 1 5.2812 -4.5469 0.1931 33 1 4.1535 -6.7232 0.4195 34 1 0.5458 -7.0915 0.9797 35 1 2.1303 -7.8994 1.0503 36 1 1.5553 -7.3026 -1.6495 37 1 0.7439 -9.0233 -3.0023 38 1 0.3980 -11.5728 -1.8372 39 1 -1.1892 -10.7707 -1.9129 40 1 -0.8928 -10.4162 -4.3495 41 1 0.6942 -11.2183 -4.2731 42 1 -1.0453 -12.0764 -6.1067 43 1 -0.2508 -13.6302 -5.7138 44 1 -2.5913 -14.2267 -6.3436 45 1 -2.6220 -12.7999 -2.5637 46 1 -2.8454 -11.4343 -3.7018 47 1 0.3580 -4.7880 0.2406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414553732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:33 Heat of formation + Delta-G solvation = -76.485690 kcal Electronic energy + Delta-G solvation = -28255.443196 eV Core-core repulsion = 24017.446654 eV Total energy + Delta-G solvation = -4237.996543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81404 -40.00287 -39.09915 -37.43827 -36.86416 -35.51453 -34.42866 -33.03968 -32.35614 -30.81615 -29.37900 -29.01987 -27.82574 -25.88492 -25.08477 -23.36208 -21.74161 -21.43691 -20.98625 -20.85329 -20.72020 -18.60642 -17.84453 -17.66193 -17.09944 -16.77500 -16.33035 -15.87968 -15.44336 -15.22310 -14.94837 -14.72343 -14.56451 -14.49067 -14.22560 -13.96932 -13.94889 -13.63463 -13.57377 -13.40643 -12.86429 -12.67333 -12.65324 -12.40941 -12.20769 -11.84784 -11.68899 -11.49537 -11.40981 -11.38905 -10.97644 -10.83580 -10.71811 -10.48487 -10.29990 -10.22198 -9.63495 -9.43354 -9.35396 -8.92278 -8.80697 -8.27920 -7.35623 -6.51640 -4.11250 1.83727 2.17314 2.23831 2.73555 2.91200 3.07894 3.09572 3.14936 3.22185 3.76782 3.86156 3.90289 4.04815 4.25810 4.43294 4.53717 4.67538 4.69394 4.91594 4.93953 4.95910 5.00986 5.04657 5.12961 5.25931 5.31482 5.43351 5.52055 5.61628 5.66240 5.74919 5.82851 5.91286 6.05135 6.22810 6.29160 6.30689 6.50572 6.52447 6.53442 6.79308 6.86374 6.98130 7.16838 7.24954 7.33310 7.68291 7.79048 7.92447 7.99484 8.59133 8.93823 9.62341 10.66134 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.001520 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.184680 B =18418.979007 C =19363.232655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.073 4.073 15 C 0.187 3.813 16 N -0.736 5.736 17 C 0.703 3.297 18 O -0.595 6.595 19 N -0.751 5.751 20 C 0.138 3.862 21 C -0.122 4.122 22 C -0.097 4.097 23 H 0.097 0.903 24 C 0.105 3.895 25 N -0.735 5.735 26 C 0.519 3.481 27 O -0.535 6.535 28 C -0.156 4.156 29 C -0.170 4.170 30 H 0.270 0.730 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.396 0.604 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.410 0.590 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 -22.086 -11.356 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.074 4.074 15 C 0.063 3.937 16 N -0.391 5.391 17 C 0.403 3.597 18 O -0.473 6.473 19 N -0.408 5.408 20 C 0.014 3.986 21 C -0.160 4.160 22 C -0.116 4.116 23 H 0.116 0.884 24 C -0.020 4.020 25 N -0.391 5.391 26 C 0.305 3.695 27 O -0.411 6.411 28 C -0.196 4.196 29 C -0.190 4.190 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.233 0.767 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.248 0.752 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.554 -22.587 -10.251 24.936 hybrid contribution 0.831 1.181 -1.142 1.841 sum 3.385 -21.407 -11.393 24.485 Atomic orbital electron populations 1.70042 1.05976 1.27680 1.45805 1.25300 0.95849 0.98875 0.96462 0.85640 0.79119 0.80319 0.78309 1.19086 1.20127 1.20089 1.21375 0.91822 0.80747 1.53007 0.88973 1.83984 1.34302 1.11425 1.78277 1.19332 0.90264 0.88087 0.92725 1.21247 0.93846 0.99098 1.10291 1.20745 0.98562 0.92273 0.97922 1.20483 0.93354 0.97117 1.10419 1.19284 0.93474 0.92870 1.01754 1.19997 0.99938 0.90936 0.82789 1.45257 1.63933 1.19903 1.09991 1.15941 0.78876 0.81351 0.83579 1.90923 1.57559 1.61994 1.36817 1.45070 1.66314 1.22380 1.06993 1.21144 0.98152 0.83963 0.95380 1.21797 1.01889 0.95862 0.96502 1.22095 0.95409 0.98413 0.95721 0.88425 1.22146 0.85600 0.97458 0.96759 1.46252 1.17105 1.50525 1.25220 1.20994 0.84999 0.80639 0.82847 1.90778 1.18442 1.54852 1.77052 1.22533 0.94958 1.01455 1.00681 1.20096 0.99460 0.89826 1.09624 0.91982 0.85476 0.87304 0.87495 0.91008 0.91114 0.76743 0.77007 0.91497 0.91369 0.90438 0.90234 0.90632 0.89982 0.75169 0.87544 0.87299 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.18 -4.85 9.76 0.05 0.00 -4.85 16 10 C 0.15 3.42 6.65 -39.11 -0.26 3.16 16 11 C -0.23 -4.59 9.17 -39.40 -0.36 -4.95 16 12 C -0.08 -1.30 10.04 -39.61 -0.40 -1.69 16 13 C -0.19 -3.05 9.70 -39.54 -0.38 -3.44 16 14 C -0.07 -1.19 5.25 -104.65 -0.55 -1.74 16 15 C 0.19 2.67 5.80 -5.19 -0.03 2.64 16 16 N -0.74 -9.07 5.55 -66.42 -0.37 -9.44 16 17 C 0.70 9.06 8.57 -86.92 -0.74 8.31 16 18 O -0.59 -10.10 16.34 5.29 0.09 -10.01 16 19 N -0.75 -6.30 5.56 -65.22 -0.36 -6.66 16 20 C 0.14 0.92 5.55 -4.04 -0.02 0.90 16 21 C -0.12 -0.37 4.68 -26.73 -0.12 -0.50 16 22 C -0.10 -0.30 3.15 -88.99 -0.28 -0.58 16 23 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 24 C 0.11 0.25 7.35 -3.12 -0.02 0.23 16 25 N -0.74 -3.69 6.24 -59.18 -0.37 -4.06 16 26 C 0.52 4.34 8.43 -10.83 -0.09 4.25 16 27 O -0.53 -7.11 18.03 5.56 0.10 -7.01 16 28 C -0.16 -0.86 5.74 -26.71 -0.15 -1.01 16 29 C -0.17 -3.35 9.65 -39.39 -0.38 -3.73 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.40 4.22 8.48 -40.82 -0.35 3.87 16 37 H 0.40 2.26 8.49 -40.82 -0.35 1.91 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.54 7.62 -51.93 -0.40 0.15 16 40 H 0.08 0.22 8.01 -51.93 -0.42 -0.20 16 41 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.08 0.13 7.89 -51.93 -0.41 -0.28 16 43 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.41 1.59 8.96 -40.82 -0.37 1.23 16 45 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.11 0.56 7.81 -51.93 -0.41 0.15 16 47 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -36.12 398.17 -9.39 -45.51 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.61 Total: 7.02 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.60 Total: -7.51 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.34 Total: -44.06 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.19 Total: -21.86 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.12 -9.39 -45.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414553732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.972 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds