Wall clock time and date at job start Wed Apr 1 2020 04:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 119.99798 * 2 1 4 4 H 1.48502 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48488 * 109.47314 * 299.99774 * 3 2 1 6 6 H 1.48502 * 109.47024 * 60.00062 * 3 2 1 7 7 C 1.38655 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00466 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.35745 * 116.99847 * 185.05566 * 9 7 2 11 11 C 1.38901 * 120.07249 * 354.44565 * 10 9 7 12 12 C 1.38077 * 119.93119 * 180.02562 * 11 10 9 13 13 C 1.38314 * 120.07022 * 359.73874 * 12 11 10 14 14 C 1.38285 * 120.13981 * 0.51214 * 13 12 11 15 15 C 1.50698 * 119.96645 * 179.76315 * 14 13 12 16 16 N 1.46500 * 109.47313 * 269.72696 * 15 14 13 17 17 C 1.34773 * 119.99881 * 180.02562 * 16 15 14 18 18 O 1.21583 * 120.00264 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00045 * 180.27508 * 17 16 15 20 20 C 1.46503 * 120.00545 * 179.72344 * 19 17 16 21 21 C 1.52995 * 109.47374 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.46941 * 179.97438 * 21 20 19 23 23 H 1.09005 * 110.85545 * 305.69927 * 22 21 20 24 24 C 1.54480 * 110.96822 * 181.91003 * 22 21 20 25 25 N 1.46766 * 105.47274 * 216.46302 * 24 22 21 26 26 C 1.34418 * 111.30128 * 17.02149 * 25 24 22 27 27 O 1.21282 * 124.94580 * 179.58506 * 26 25 24 28 28 C 1.51340 * 110.12940 * 359.55478 * 26 25 24 29 29 C 1.38126 * 120.06564 * 359.49575 * 14 13 12 30 30 H 0.97003 * 120.00283 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.03189 * 0.03898 * 11 10 9 32 32 H 1.08002 * 119.96244 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.93530 * 180.26224 * 13 12 11 34 34 H 1.09000 * 109.46904 * 149.73035 * 15 14 13 35 35 H 1.08998 * 109.46894 * 29.72886 * 15 14 13 36 36 H 0.96996 * 119.99961 * 0.02562 * 16 15 14 37 37 H 0.97006 * 119.99726 * 359.72243 * 19 17 16 38 38 H 1.09007 * 109.46800 * 300.00164 * 20 19 17 39 39 H 1.09003 * 109.46758 * 59.99344 * 20 19 17 40 40 H 1.08993 * 109.47061 * 299.99687 * 21 20 19 41 41 H 1.08998 * 109.47160 * 59.99914 * 21 20 19 42 42 H 1.08997 * 110.24815 * 335.46592 * 24 22 21 43 43 H 1.09000 * 110.24516 * 97.46663 * 24 22 21 44 44 H 0.97003 * 124.35402 * 197.03325 * 25 24 22 45 45 H 1.08996 * 110.52498 * 225.12413 * 28 26 25 46 46 H 1.09000 * 110.47762 * 102.45852 * 28 26 25 47 47 H 1.07994 * 120.03402 * 180.27471 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4574 -3.4395 0.0948 12 6 4.2024 -4.5969 0.2034 13 6 3.5686 -5.8197 0.3304 14 6 2.1875 -5.8884 0.3383 15 6 1.5010 -7.2233 0.4715 16 7 1.2715 -7.7895 -0.8601 17 6 0.6662 -8.9868 -0.9880 18 8 0.3110 -9.5973 0.0016 19 7 0.4601 -9.5103 -2.2128 20 6 -0.1924 -10.8146 -2.3517 21 6 -0.3027 -11.1743 -3.8347 22 6 -0.9837 -12.5367 -3.9797 23 1 -0.4667 -13.2937 -3.3898 24 6 -1.0702 -12.9563 -5.4639 25 7 -2.3569 -13.6489 -5.6006 26 6 -3.1689 -13.3799 -4.5637 27 8 -4.2925 -13.8163 -4.4297 28 6 -2.4769 -12.4537 -3.5870 29 6 1.4366 -4.7342 0.2299 30 1 -0.4851 0.8400 -0.0004 31 1 3.9528 -2.4845 0.0002 32 1 5.2812 -4.5469 0.1931 33 1 4.1535 -6.7232 0.4195 34 1 0.5458 -7.0915 0.9797 35 1 2.1303 -7.8994 1.0503 36 1 1.5553 -7.3026 -1.6495 37 1 0.7439 -9.0233 -3.0023 38 1 0.3980 -11.5728 -1.8372 39 1 -1.1892 -10.7707 -1.9129 40 1 -0.8928 -10.4162 -4.3495 41 1 0.6942 -11.2183 -4.2731 42 1 -1.0453 -12.0764 -6.1067 43 1 -0.2508 -13.6302 -5.7138 44 1 -2.5913 -14.2267 -6.3436 45 1 -2.6220 -12.7999 -2.5637 46 1 -2.8454 -11.4343 -3.7018 47 1 0.3580 -4.7880 0.2406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414553732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:32 Heat of formation + Delta-G solvation = -105.231613 kcal Electronic energy + Delta-G solvation = -28256.689713 eV Core-core repulsion = 24017.446654 eV Total energy + Delta-G solvation = -4239.243060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35757 -41.08050 -40.61533 -38.52734 -37.98849 -36.27414 -35.63051 -34.27892 -33.64344 -32.09454 -30.76701 -29.75805 -28.35818 -27.47106 -26.54913 -23.93777 -23.23381 -22.43036 -22.07125 -21.48129 -21.38931 -19.81119 -19.20670 -18.66426 -18.36410 -17.35730 -17.25806 -16.85838 -16.66226 -16.29556 -16.09299 -15.99370 -15.62138 -15.49301 -15.39998 -15.29778 -14.88825 -14.56698 -14.44497 -14.29001 -13.94817 -13.88698 -13.66763 -13.36748 -13.17821 -13.03647 -13.01353 -12.54480 -12.34180 -12.28941 -12.24699 -12.07590 -11.84785 -11.77886 -11.38132 -11.18460 -10.92921 -10.81062 -10.33725 -10.07517 -9.75384 -9.70033 -9.01502 -8.46193 -6.14623 0.39297 0.72692 1.36772 1.44397 1.54551 1.54748 1.85115 2.18053 2.20707 2.47970 2.83276 3.14244 3.35854 3.41850 3.44615 3.56072 3.81560 3.86077 4.09668 4.12191 4.31287 4.33459 4.35921 4.46110 4.55766 4.59748 4.69206 4.71047 4.75295 4.75840 4.79752 4.90314 5.04320 5.05046 5.13457 5.23965 5.28189 5.36497 5.46098 5.59333 5.64682 5.72934 5.74517 5.88503 6.01200 6.02370 6.06229 6.19530 6.98906 7.13909 7.23839 7.62780 7.79618 8.77106 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.001520 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.184680 B =18418.979007 C =19363.232655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.111 3.889 11 C -0.234 4.234 12 C -0.070 4.070 13 C -0.166 4.166 14 C -0.058 4.058 15 C 0.194 3.806 16 N -0.730 5.730 17 C 0.699 3.301 18 O -0.638 6.638 19 N -0.733 5.733 20 C 0.134 3.866 21 C -0.108 4.108 22 C -0.087 4.087 23 H 0.105 0.895 24 C 0.104 3.896 25 N -0.724 5.724 26 C 0.507 3.493 27 O -0.597 6.597 28 C -0.156 4.156 29 C -0.180 4.180 30 H 0.272 0.728 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.409 0.591 37 H 0.413 0.587 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.415 0.585 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.802 -23.638 -12.723 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.122 0.878 9 O -0.140 6.140 10 C 0.061 3.939 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.185 4.185 14 C -0.058 4.058 15 C 0.070 3.930 16 N -0.386 5.386 17 C 0.398 3.602 18 O -0.520 6.520 19 N -0.390 5.390 20 C 0.010 3.990 21 C -0.146 4.146 22 C -0.107 4.107 23 H 0.123 0.877 24 C -0.019 4.019 25 N -0.378 5.378 26 C 0.295 3.705 27 O -0.479 6.479 28 C -0.196 4.196 29 C -0.200 4.200 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.245 0.755 37 H 0.249 0.751 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.254 0.746 45 H 0.117 0.883 46 H 0.130 0.870 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.547 -24.185 -11.698 27.652 hybrid contribution -0.252 1.284 -0.724 1.496 sum 6.295 -22.901 -12.423 26.803 Atomic orbital electron populations 1.70190 1.08066 1.28680 1.49024 1.26576 0.96809 1.02767 0.95963 0.84530 0.78377 0.74911 0.78416 1.17218 1.19445 1.19669 1.21867 0.92559 0.81344 1.52963 0.87845 1.83950 1.35988 1.12596 1.81474 1.19866 0.91671 0.87825 0.94529 1.21375 0.92968 1.00432 1.10553 1.21163 1.00430 0.91110 0.96038 1.21000 0.93002 0.98279 1.06198 1.19449 0.93973 0.92493 0.99908 1.19833 0.99326 0.89939 0.83946 1.45044 1.64020 1.19923 1.09592 1.16129 0.78610 0.81140 0.84298 1.90898 1.59321 1.63124 1.38670 1.44976 1.65141 1.22773 1.06079 1.21291 0.96917 0.82868 0.97959 1.21707 1.03388 0.95741 0.93758 1.22071 0.93379 0.98810 0.96404 0.87683 1.22386 0.84737 0.98492 0.96283 1.46334 1.17534 1.49706 1.24267 1.21508 0.84487 0.80564 0.83958 1.90736 1.21141 1.57388 1.78594 1.22550 0.96655 1.00761 0.99648 1.20220 0.99373 0.90193 1.10247 0.91926 0.86235 0.83325 0.83319 0.92453 0.89786 0.75533 0.75094 0.92023 0.93039 0.89619 0.87800 0.88941 0.87433 0.74584 0.88274 0.87018 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.78 13.67 21.61 0.30 -55.48 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 3 Si 1.02 41.76 29.55 68.60 2.03 43.79 16 4 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.41 -23.20 9.49 67.92 0.64 -22.56 16 8 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 9 O -0.23 -13.60 9.76 -22.75 -0.22 -13.82 16 10 C 0.11 5.23 6.65 22.58 0.15 5.38 16 11 C -0.23 -9.35 9.17 22.39 0.21 -9.14 16 12 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 13 C -0.17 -4.45 9.70 22.30 0.22 -4.24 16 14 C -0.06 -1.75 5.25 -19.88 -0.10 -1.85 16 15 C 0.19 5.13 5.80 85.63 0.50 5.62 16 16 N -0.73 -16.33 5.55 -482.31 -2.68 -19.00 16 17 C 0.70 16.73 8.57 179.06 1.53 18.27 16 18 O -0.64 -21.12 16.34 -3.98 -0.06 -21.18 16 19 N -0.73 -10.45 5.56 -478.54 -2.66 -13.11 16 20 C 0.13 1.51 5.55 86.38 0.48 1.98 16 21 C -0.11 -0.28 4.68 30.59 0.14 -0.14 16 22 C -0.09 -0.30 3.15 -9.74 -0.03 -0.33 16 23 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 24 C 0.10 0.15 7.35 86.83 0.64 0.79 16 25 N -0.72 -6.17 6.24 -459.74 -2.87 -9.03 16 26 C 0.51 8.51 8.43 87.92 0.74 9.25 16 27 O -0.60 -16.80 18.03 -3.04 -0.05 -16.85 16 28 C -0.16 -1.61 5.74 30.61 0.18 -1.44 16 29 C -0.18 -7.20 9.65 22.39 0.22 -6.98 16 30 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 36 H 0.41 7.50 8.48 -92.71 -0.79 6.71 16 37 H 0.41 3.28 8.49 -92.70 -0.79 2.50 16 38 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.05 0.78 7.62 -2.39 -0.02 0.76 16 40 H 0.09 0.16 8.01 -2.39 -0.02 0.14 16 41 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.09 -0.09 7.89 -2.39 -0.02 -0.11 16 43 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.42 2.70 8.96 -92.71 -0.83 1.87 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.11 1.08 7.81 -2.39 -0.02 1.06 16 47 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -86.56 398.17 -1.40 -87.96 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -1.37 Total: 24.84 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 6.19 Total: -8.10 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -7.91 Total: -96.64 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.34 Total: -51.85 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -86.56 -1.40 -87.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414553732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.277 kcal (2) G-P(sol) polarization free energy of solvation -86.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds