Wall clock time and date at job start Wed Apr 1 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46994 * 299.99693 * 3 2 1 6 6 H 1.48501 * 109.47407 * 59.99380 * 3 2 1 7 7 C 1.38952 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00342 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00292 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99315 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00402 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47194 * 179.97438 * 12 10 9 14 14 C 1.48813 * 111.18681 * 52.66331 * 13 12 10 15 15 C 1.54933 * 103.35205 * 159.50572 * 14 13 12 16 16 C 1.54594 * 102.91997 * 322.69117 * 15 14 13 17 17 H 1.09001 * 110.39460 * 140.91666 * 16 15 14 18 18 N 1.46503 * 110.30564 * 263.04163 * 16 15 14 19 19 C 1.34777 * 119.99886 * 270.71523 * 18 16 15 20 20 O 1.21280 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99979 * 180.02562 * 19 18 16 22 22 O 1.42903 * 109.47024 * 180.02562 * 21 19 18 23 23 C 1.35899 * 116.99762 * 180.02562 * 22 21 19 24 24 C 1.38735 * 120.05639 * 359.72230 * 23 22 21 25 25 C 1.38141 * 119.93939 * 179.74426 * 24 23 22 26 26 C 1.38267 * 120.05966 * 0.51321 * 25 24 23 27 27 C 1.38262 * 120.11202 * 359.76216 * 26 25 24 28 28 C 1.38153 * 120.05294 * 359.97438 * 27 26 25 29 29 C 1.47905 * 111.00050 * 169.99666 * 13 12 10 30 30 H 0.96997 * 119.99965 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00265 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47620 * 59.99366 * 12 10 9 33 33 H 1.09011 * 109.46935 * 299.99480 * 12 10 9 34 34 H 1.08998 * 110.51915 * 41.07024 * 14 13 12 35 35 H 1.09004 * 110.69711 * 278.02347 * 14 13 12 36 36 H 1.08999 * 110.72416 * 204.32980 * 15 14 13 37 37 H 1.08999 * 110.72531 * 81.04521 * 15 14 13 38 38 H 0.96996 * 120.00402 * 90.71574 * 18 16 15 39 39 H 1.09000 * 109.47052 * 299.99768 * 21 19 18 40 40 H 1.08991 * 109.46932 * 59.99812 * 21 19 18 41 41 H 1.07995 * 120.02446 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.96915 * 180.27238 * 25 24 23 43 43 H 1.07998 * 119.94564 * 179.74508 * 26 25 24 44 44 H 1.07996 * 119.97823 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.02445 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.91668 * 94.80258 * 29 13 12 47 47 H 1.09002 * 109.91761 * 333.70433 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1984 -5.9794 0.0017 14 6 3.1867 -5.8414 1.1057 15 6 3.7258 -7.2827 1.2857 16 6 2.4690 -8.1530 1.0554 17 1 2.7261 -9.0496 0.4912 18 7 1.8607 -8.5170 2.3374 19 6 2.2504 -9.6394 2.9738 20 8 3.1044 -10.3482 2.4848 21 6 1.6242 -10.0141 4.2924 22 8 2.1999 -11.2343 4.7633 23 6 1.7419 -11.7152 5.9490 24 6 0.7628 -11.0238 6.6477 25 6 0.2953 -11.5176 7.8501 26 6 0.8097 -12.6942 8.3627 27 6 1.7896 -13.3822 7.6711 28 6 2.2567 -12.8954 6.4655 29 6 1.5091 -7.2660 0.2411 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6181 -4.9209 -0.8896 33 1 0.6162 -4.9205 0.8904 34 1 2.6966 -5.4974 2.0165 35 1 3.9907 -5.1628 0.8205 36 1 4.1147 -7.4259 2.2938 37 1 4.4902 -7.5044 0.5411 38 1 1.1774 -7.9503 2.7284 39 1 1.8066 -9.2225 5.0192 40 1 0.5504 -10.1457 4.1602 41 1 0.3640 -10.1024 6.2500 42 1 -0.4701 -10.9820 8.3923 43 1 0.4457 -13.0764 9.3049 44 1 2.1901 -14.3008 8.0737 45 1 3.0224 -13.4330 5.9259 46 1 1.2771 -7.7455 -0.7099 47 1 0.5918 -7.0965 0.8049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481708638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:12 Heat of formation + Delta-G solvation = -62.507494 kcal Electronic energy + Delta-G solvation = -28997.940404 eV Core-core repulsion = 24760.550001 eV Total energy + Delta-G solvation = -4237.390403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82233 -40.02554 -38.93921 -37.77338 -37.26820 -34.54056 -33.85079 -31.70859 -31.44095 -31.08333 -30.45635 -29.02165 -27.98788 -26.37640 -24.23993 -23.21275 -22.64921 -21.55951 -21.00225 -20.44601 -19.27495 -18.81485 -17.92645 -17.54877 -16.90494 -16.68199 -16.35813 -15.98356 -15.79911 -15.37459 -14.89936 -14.74846 -14.62506 -14.53530 -14.23122 -13.94357 -13.81766 -13.60413 -13.36775 -13.03945 -13.02912 -12.59373 -12.21523 -12.01203 -11.95622 -11.84068 -11.59224 -11.52369 -11.34404 -11.29148 -11.15890 -10.92146 -10.82458 -10.37611 -10.27980 -10.10598 -9.56723 -9.42906 -9.32638 -8.63458 -8.45717 -8.08539 -7.97061 -6.47719 -3.88604 0.91430 1.02802 2.17053 2.25024 3.12221 3.23561 3.27784 3.30758 3.37688 3.82418 4.01805 4.16604 4.27489 4.39603 4.46669 4.52179 4.54005 4.58996 4.73080 4.73819 4.96414 4.98726 5.04823 5.10136 5.19546 5.21417 5.37692 5.48704 5.58475 5.59684 5.67270 5.82728 5.86725 5.88937 5.96750 5.98202 6.12194 6.13326 6.20966 6.29610 6.35002 6.62482 6.91669 7.10797 7.13107 7.21592 7.50171 7.86927 8.00123 8.55036 9.12157 9.47187 9.98591 10.69901 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.001661 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.722247 B =16857.834941 C =17824.127651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.441 3.559 11 O -0.580 6.580 12 C 0.037 3.963 13 N -0.493 5.493 14 C 0.038 3.962 15 C -0.135 4.135 16 C 0.135 3.865 17 H 0.101 0.899 18 N -0.719 5.719 19 C 0.516 3.484 20 O -0.514 6.514 21 C 0.041 3.959 22 O -0.289 6.289 23 C 0.129 3.871 24 C -0.211 4.211 25 C -0.080 4.080 26 C -0.160 4.160 27 C -0.080 4.080 28 C -0.149 4.149 29 C 0.028 3.972 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.400 0.600 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 -22.818 13.548 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.095 4.095 13 N -0.218 5.218 14 C -0.089 4.089 15 C -0.174 4.174 16 C 0.031 3.969 17 H 0.119 0.881 18 N -0.373 5.373 19 C 0.301 3.699 20 O -0.388 6.388 21 C -0.038 4.038 22 O -0.201 6.201 23 C 0.084 3.916 24 C -0.230 4.230 25 C -0.098 4.098 26 C -0.178 4.178 27 C -0.098 4.098 28 C -0.168 4.168 29 C -0.100 4.100 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.235 0.765 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.108 0.892 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.165 -23.233 12.527 26.483 hybrid contribution -1.433 1.448 1.080 2.306 sum -3.598 -21.785 13.606 25.936 Atomic orbital electron populations 1.69615 1.05961 1.28133 1.50486 1.25271 0.95636 0.99772 0.97214 0.85797 0.79735 0.81071 0.77731 1.19184 1.20693 1.20775 1.19759 0.93424 0.82149 1.47577 0.87786 1.41856 1.09192 1.04585 1.64092 1.19686 0.88372 0.84640 0.84685 1.90452 1.13688 1.86704 1.55590 1.22110 0.94481 0.91294 1.01574 1.64721 1.13077 0.99780 1.44223 1.23552 0.97477 0.96325 0.91497 1.22991 0.96981 0.95134 1.02260 1.21904 0.93300 0.98746 0.82978 0.88130 1.46054 1.43003 1.24924 1.23284 1.19970 0.83018 0.81261 0.85676 1.90767 1.30820 1.50838 1.66408 1.22490 0.98661 0.87442 0.95241 1.86164 1.61207 1.38333 1.34429 1.19089 0.93566 0.93766 0.85198 1.21293 1.01124 1.02300 0.98298 1.20975 0.98503 0.95620 0.94683 1.21102 0.99147 0.96562 1.01003 1.21004 0.95900 0.99323 0.93606 1.20498 1.03218 0.95595 0.97455 1.23233 0.95466 0.91551 0.99795 0.91876 0.77472 0.89080 0.93436 0.94697 0.86228 0.91022 0.89765 0.76520 0.88812 0.88863 0.85388 0.85659 0.85844 0.85240 0.84951 0.89172 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.73 5.29 -10.97 -0.06 -13.79 16 10 C 0.44 9.95 7.50 -10.99 -0.08 9.87 16 11 O -0.58 -14.88 13.12 5.54 0.07 -14.81 16 12 C 0.04 0.62 5.52 -4.98 -0.03 0.59 16 13 N -0.49 -7.74 5.27 -231.64 -1.22 -8.96 16 14 C 0.04 0.61 5.31 -1.74 -0.01 0.60 16 15 C -0.13 -1.77 6.79 -24.87 -0.17 -1.94 16 16 C 0.14 1.53 3.34 -66.57 -0.22 1.31 16 17 H 0.10 1.22 7.56 -51.93 -0.39 0.83 16 18 N -0.72 -6.65 5.06 -52.49 -0.27 -6.92 16 19 C 0.52 5.65 7.91 -10.98 -0.09 5.57 16 20 O -0.51 -7.97 16.15 -14.35 -0.23 -8.20 16 21 C 0.04 0.33 5.22 36.01 0.19 0.51 16 22 O -0.29 -3.21 9.67 -39.33 -0.38 -3.59 16 23 C 0.13 1.24 6.69 -39.22 -0.26 0.98 16 24 C -0.21 -1.62 9.04 -39.43 -0.36 -1.98 16 25 C -0.08 -0.54 10.04 -39.61 -0.40 -0.94 16 26 C -0.16 -1.05 10.04 -39.56 -0.40 -1.45 16 27 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 28 C -0.15 -1.31 9.99 -39.43 -0.39 -1.70 16 29 C 0.03 0.33 6.46 -2.75 -0.02 0.31 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 31 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.05 0.70 7.81 -51.92 -0.41 0.30 16 34 H 0.03 0.55 8.02 -51.93 -0.42 0.14 16 35 H 0.12 2.35 6.00 -51.93 -0.31 2.03 16 36 H 0.07 0.92 8.05 -51.93 -0.42 0.51 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.40 2.67 8.34 -40.82 -0.34 2.33 16 39 H 0.09 0.56 7.65 -51.93 -0.40 0.16 16 40 H 0.09 0.50 7.67 -51.93 -0.40 0.11 16 41 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.48 7.05 -51.93 -0.37 0.12 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -33.94 392.01 -9.92 -43.85 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.57 Total: 11.10 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.87 Total: 3.00 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.82 Total: -52.87 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.54 Total: -26.60 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.94 -9.92 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481708638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.656 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds