Wall clock time and date at job start Wed Apr 1 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46994 * 299.99693 * 3 2 1 6 6 H 1.48501 * 109.47407 * 59.99380 * 3 2 1 7 7 C 1.38952 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00342 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00292 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99315 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00402 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47194 * 179.97438 * 12 10 9 14 14 C 1.48813 * 111.18681 * 52.66331 * 13 12 10 15 15 C 1.54933 * 103.35205 * 159.50572 * 14 13 12 16 16 C 1.54594 * 102.91997 * 322.69117 * 15 14 13 17 17 H 1.09001 * 110.39460 * 140.91666 * 16 15 14 18 18 N 1.46503 * 110.30564 * 263.04163 * 16 15 14 19 19 C 1.34777 * 119.99886 * 270.71523 * 18 16 15 20 20 O 1.21280 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99979 * 180.02562 * 19 18 16 22 22 O 1.42903 * 109.47024 * 180.02562 * 21 19 18 23 23 C 1.35899 * 116.99762 * 180.02562 * 22 21 19 24 24 C 1.38735 * 120.05639 * 359.72230 * 23 22 21 25 25 C 1.38141 * 119.93939 * 179.74426 * 24 23 22 26 26 C 1.38267 * 120.05966 * 0.51321 * 25 24 23 27 27 C 1.38262 * 120.11202 * 359.76216 * 26 25 24 28 28 C 1.38153 * 120.05294 * 359.97438 * 27 26 25 29 29 C 1.47905 * 111.00050 * 169.99666 * 13 12 10 30 30 H 0.96997 * 119.99965 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00265 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47620 * 59.99366 * 12 10 9 33 33 H 1.09011 * 109.46935 * 299.99480 * 12 10 9 34 34 H 1.08998 * 110.51915 * 41.07024 * 14 13 12 35 35 H 1.09004 * 110.69711 * 278.02347 * 14 13 12 36 36 H 1.08999 * 110.72416 * 204.32980 * 15 14 13 37 37 H 1.08999 * 110.72531 * 81.04521 * 15 14 13 38 38 H 0.96996 * 120.00402 * 90.71574 * 18 16 15 39 39 H 1.09000 * 109.47052 * 299.99768 * 21 19 18 40 40 H 1.08991 * 109.46932 * 59.99812 * 21 19 18 41 41 H 1.07995 * 120.02446 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.96915 * 180.27238 * 25 24 23 43 43 H 1.07998 * 119.94564 * 179.74508 * 26 25 24 44 44 H 1.07996 * 119.97823 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.02445 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.91668 * 94.80258 * 29 13 12 47 47 H 1.09002 * 109.91761 * 333.70433 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1984 -5.9794 0.0017 14 6 3.1867 -5.8414 1.1057 15 6 3.7258 -7.2827 1.2857 16 6 2.4690 -8.1530 1.0554 17 1 2.7261 -9.0496 0.4912 18 7 1.8607 -8.5170 2.3374 19 6 2.2504 -9.6394 2.9738 20 8 3.1044 -10.3482 2.4848 21 6 1.6242 -10.0141 4.2924 22 8 2.1999 -11.2343 4.7633 23 6 1.7419 -11.7152 5.9490 24 6 0.7628 -11.0238 6.6477 25 6 0.2953 -11.5176 7.8501 26 6 0.8097 -12.6942 8.3627 27 6 1.7896 -13.3822 7.6711 28 6 2.2567 -12.8954 6.4655 29 6 1.5091 -7.2660 0.2411 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6181 -4.9209 -0.8896 33 1 0.6162 -4.9205 0.8904 34 1 2.6966 -5.4974 2.0165 35 1 3.9907 -5.1628 0.8205 36 1 4.1147 -7.4259 2.2938 37 1 4.4902 -7.5044 0.5411 38 1 1.1774 -7.9503 2.7284 39 1 1.8066 -9.2225 5.0192 40 1 0.5504 -10.1457 4.1602 41 1 0.3640 -10.1024 6.2500 42 1 -0.4701 -10.9820 8.3923 43 1 0.4457 -13.0764 9.3049 44 1 2.1901 -14.3008 8.0737 45 1 3.0224 -13.4330 5.9259 46 1 1.2771 -7.7455 -0.7099 47 1 0.5918 -7.0965 0.8049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481708638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:11 Heat of formation + Delta-G solvation = -87.366740 kcal Electronic energy + Delta-G solvation = -28999.018382 eV Core-core repulsion = 24760.550001 eV Total energy + Delta-G solvation = -4238.468381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58519 -40.93832 -40.24524 -38.98002 -38.11299 -36.05669 -35.31584 -33.34304 -32.50505 -31.96479 -31.10959 -29.92929 -28.97233 -27.78505 -25.93520 -23.80087 -23.25877 -22.65801 -21.92498 -21.46988 -20.95984 -19.85002 -19.41362 -18.36688 -17.93480 -17.48049 -17.34319 -16.95347 -16.69179 -16.61388 -16.31684 -16.12750 -15.74305 -15.48977 -15.33712 -15.19570 -14.74118 -14.67396 -14.32613 -14.19083 -13.69392 -13.65805 -13.54032 -13.43352 -13.15468 -12.94417 -12.82090 -12.47999 -12.46659 -12.39051 -12.28355 -12.11007 -12.10412 -11.93699 -11.83299 -11.47094 -11.01617 -10.31860 -10.11156 -9.99222 -9.95180 -9.32131 -9.20879 -8.46852 -5.94807 0.39399 0.47574 1.36183 1.41897 1.42241 1.47272 1.55697 2.05188 2.28534 2.57837 2.84581 2.89829 3.20671 3.29804 3.50652 3.58275 3.77332 3.88146 4.00109 4.04428 4.06668 4.07996 4.28053 4.30098 4.31771 4.37317 4.47436 4.49540 4.53572 4.58366 4.69600 4.72284 4.82883 4.94393 5.06242 5.09089 5.26211 5.33246 5.37559 5.42779 5.48113 5.61240 5.81890 5.84735 5.93997 6.10741 6.30118 6.45457 6.61383 7.08726 7.13958 7.56674 8.12994 8.70603 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.001661 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.722247 B =16857.834941 C =17824.127651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.615 6.615 12 C 0.049 3.951 13 N -0.514 5.514 14 C 0.044 3.956 15 C -0.126 4.126 16 C 0.144 3.856 17 H 0.095 0.905 18 N -0.703 5.703 19 C 0.516 3.484 20 O -0.567 6.567 21 C 0.042 3.958 22 O -0.321 6.321 23 C 0.106 3.894 24 C -0.215 4.215 25 C -0.085 4.085 26 C -0.163 4.163 27 C -0.084 4.084 28 C -0.173 4.173 29 C 0.035 3.965 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.417 0.583 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.125 0.875 46 H 0.104 0.896 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 -23.215 14.990 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.502 6.502 12 C -0.082 4.082 13 N -0.239 5.239 14 C -0.083 4.083 15 C -0.166 4.166 16 C 0.039 3.961 17 H 0.113 0.887 18 N -0.358 5.358 19 C 0.302 3.698 20 O -0.445 6.445 21 C -0.036 4.036 22 O -0.235 6.235 23 C 0.061 3.939 24 C -0.234 4.234 25 C -0.103 4.103 26 C -0.181 4.181 27 C -0.102 4.102 28 C -0.192 4.192 29 C -0.093 4.093 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.143 0.857 46 H 0.122 0.878 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.600 -23.623 13.984 27.835 hybrid contribution -0.669 1.502 0.662 1.772 sum -5.269 -22.122 14.647 27.049 Atomic orbital electron populations 1.69665 1.06723 1.29178 1.50424 1.25981 0.96510 1.02252 0.96363 0.84909 0.78023 0.77353 0.78284 1.19959 1.19727 1.19624 1.19675 0.92661 0.84024 1.49742 0.90393 1.41910 1.09312 1.04620 1.65073 1.20787 0.88317 0.86095 0.82312 1.90461 1.15708 1.87616 1.56393 1.22017 0.94100 0.88189 1.03908 1.64667 1.13613 1.01068 1.44529 1.23283 0.96608 0.96911 0.91495 1.22875 0.97763 0.93860 1.02074 1.21680 0.92523 0.98039 0.83902 0.88741 1.45876 1.42811 1.24674 1.22424 1.20532 0.82138 0.80739 0.86359 1.90748 1.33277 1.52566 1.67910 1.22639 0.99785 0.87376 0.93824 1.86107 1.62386 1.39598 1.35387 1.19322 0.94802 0.94502 0.85260 1.21562 1.00476 1.02880 0.98467 1.21354 0.98740 0.95754 0.94471 1.21469 0.98549 0.96425 1.01693 1.21286 0.95918 1.00069 0.92940 1.20700 1.03864 0.96130 0.98522 1.23260 0.95878 0.89140 1.01041 0.91333 0.76944 0.86984 0.90490 0.94592 0.90612 0.90917 0.90617 0.74537 0.86378 0.85715 0.83289 0.83283 0.83576 0.83298 0.85689 0.87763 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.32 13.05 21.66 0.28 -48.03 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 0.99 42.25 29.55 68.60 2.03 44.27 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.33 -18.38 9.68 84.04 0.81 -17.57 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.57 -28.24 5.29 -306.99 -1.62 -29.86 16 10 C 0.44 19.85 7.50 87.65 0.66 20.51 16 11 O -0.62 -32.65 13.12 -3.08 -0.04 -32.69 16 12 C 0.05 1.55 5.52 85.56 0.47 2.02 16 13 N -0.51 -15.36 5.27 -886.79 -4.67 -20.03 16 14 C 0.04 1.42 5.31 86.59 0.46 1.88 16 15 C -0.13 -3.30 6.79 31.80 0.22 -3.09 16 16 C 0.14 3.03 3.34 45.87 0.15 3.18 16 17 H 0.09 2.20 7.56 -2.39 -0.02 2.18 16 18 N -0.70 -11.37 5.06 -438.36 -2.22 -13.59 16 19 C 0.52 10.63 7.91 87.66 0.69 11.32 16 20 O -0.57 -17.69 16.15 16.01 0.26 -17.44 16 21 C 0.04 0.59 5.22 71.24 0.37 0.96 16 22 O -0.32 -7.03 9.67 -73.37 -0.71 -7.74 16 23 C 0.11 1.96 6.69 22.51 0.15 2.12 16 24 C -0.22 -2.84 9.04 22.37 0.20 -2.64 16 25 C -0.09 -0.93 10.04 22.25 0.22 -0.71 16 26 C -0.16 -1.78 10.04 22.28 0.22 -1.56 16 27 C -0.08 -1.08 10.04 22.26 0.22 -0.86 16 28 C -0.17 -3.07 9.99 22.37 0.22 -2.85 16 29 C 0.03 0.70 6.46 86.44 0.56 1.25 16 30 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.40 18.47 7.90 -92.71 -0.73 17.74 16 32 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 33 H 0.08 2.01 7.81 -2.38 -0.02 1.99 16 34 H 0.04 1.12 8.02 -2.39 -0.02 1.10 16 35 H 0.08 3.12 6.00 -2.38 -0.01 3.11 16 36 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.42 4.05 8.34 -92.71 -0.77 3.28 16 39 H 0.12 1.06 7.65 -2.39 -0.02 1.05 16 40 H 0.13 0.94 7.67 -2.39 -0.02 0.92 16 41 H 0.15 1.17 6.30 -2.91 -0.02 1.15 16 42 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 43 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 44 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 45 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 1.16 7.05 -2.39 -0.02 1.14 16 Total: -1.00 -77.16 392.01 -1.07 -78.23 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.49 Total: 33.03 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 6.11 Total: 13.85 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -8.23 Total: -111.51 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.49 Total: -57.87 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -77.16 -1.07 -78.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481708638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.136 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds