Wall clock time and date at job start Wed Apr 1 2020 04:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00291 * 2 1 4 4 H 1.48501 * 109.46893 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46926 * 29.99886 * 3 2 1 6 6 H 1.48492 * 109.47300 * 150.00008 * 3 2 1 7 7 C 1.38817 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99571 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00300 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00169 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47266 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47491 * 64.99684 * 11 10 9 13 13 N 1.46503 * 109.46890 * 304.99960 * 11 10 9 14 14 C 1.34779 * 119.99816 * 155.00260 * 13 11 10 15 15 O 1.21545 * 120.00491 * 359.97438 * 14 13 11 16 16 C 1.47861 * 119.99477 * 180.02562 * 14 13 11 17 17 C 1.39601 * 120.12341 * 0.02562 * 16 14 13 18 18 C 1.37961 * 119.96682 * 179.97438 * 17 16 14 19 19 C 1.38287 * 120.20749 * 359.97166 * 18 17 16 20 20 C 1.38810 * 120.23860 * 0.05175 * 19 18 17 21 21 O 1.35909 * 119.98368 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99994 * 359.97327 * 21 20 19 23 23 C 1.50702 * 109.47180 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99792 * 179.97438 * 23 22 21 25 25 O 1.21276 * 119.99994 * 0.02562 * 23 22 21 26 26 C 1.38490 * 120.02752 * 359.95135 * 20 19 18 27 27 C 1.52999 * 109.47400 * 184.99894 * 11 10 9 28 28 C 1.52998 * 117.49907 * 248.74623 * 27 11 10 29 29 C 1.52998 * 117.50153 * 180.08357 * 27 11 10 30 30 H 0.96998 * 119.99626 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99487 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47513 * 59.99702 * 10 9 7 33 33 H 1.09006 * 109.47288 * 299.99525 * 10 9 7 34 34 H 0.97003 * 119.99875 * 334.99827 * 13 11 10 35 35 H 1.07999 * 120.01420 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.89289 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.87677 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.47573 * 300.00438 * 22 21 20 39 39 H 1.09002 * 109.47069 * 59.99894 * 22 21 20 40 40 H 0.96995 * 120.00233 * 0.02562 * 24 23 22 41 41 H 0.97004 * 119.99266 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.09573 * 180.30141 * 26 20 19 43 43 H 1.09001 * 115.54760 * 34.41262 * 27 11 10 44 44 H 1.08999 * 117.49642 * 359.97438 * 28 27 11 45 45 H 1.09003 * 117.49824 * 145.01694 * 28 27 11 46 46 H 1.08999 * 117.50455 * 214.97758 * 29 27 11 47 47 H 1.09004 * 117.49716 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0024 12 1 5.8935 -1.6985 0.9342 13 7 5.9525 -1.3229 -1.1285 14 6 7.0505 -0.5430 -1.0760 15 8 7.7615 -0.5599 -0.0903 16 6 7.3894 0.3341 -2.2171 17 6 6.5738 0.3568 -3.3498 18 6 6.8928 1.1767 -4.4124 19 6 8.0187 1.9778 -4.3595 20 6 8.8361 1.9617 -3.2377 21 8 9.9417 2.7508 -3.1915 22 6 10.2018 3.5706 -4.3327 23 6 11.4584 4.3697 -4.1012 24 7 11.9018 5.2181 -5.0500 25 8 12.0710 4.2487 -3.0616 26 6 8.5251 1.1423 -2.1654 27 6 6.3803 -3.5111 -0.1233 28 6 7.1785 -3.9839 1.0933 29 6 7.9088 -3.4437 -0.1388 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 0.0007 32 1 3.8490 -3.0424 -0.8891 33 1 3.8484 -3.0427 0.8909 34 1 5.3849 -1.3091 -1.9150 35 1 5.6934 -0.2673 -3.3941 36 1 6.2607 1.1936 -5.2879 37 1 8.2632 2.6180 -5.1943 38 1 10.3290 2.9394 -5.2121 39 1 9.3639 4.2495 -4.4909 40 1 11.4120 5.3145 -5.8816 41 1 12.7104 5.7327 -4.9008 42 1 9.1576 1.1325 -1.2900 43 1 5.9039 -4.2732 -0.7399 44 1 7.1595 -3.3547 1.9832 45 1 7.2274 -5.0572 1.2770 46 1 8.4380 -4.1619 -0.7651 47 1 8.3700 -2.4592 -0.0598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498768528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:58 Heat of formation + Delta-G solvation = -36.492704 kcal Electronic energy + Delta-G solvation = -29928.537915 eV Core-core repulsion = 25692.275598 eV Total energy + Delta-G solvation = -4236.262317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.86585 -40.12744 -39.30267 -37.67502 -36.82989 -35.19683 -34.28435 -33.58685 -31.63355 -31.33887 -30.57018 -28.60665 -28.31583 -24.50405 -23.66414 -22.67864 -22.17114 -21.63219 -21.31270 -20.55828 -20.13109 -18.94002 -18.17556 -17.74417 -17.07498 -16.81617 -16.70139 -16.33553 -15.99988 -15.52070 -15.38447 -14.94032 -14.72402 -14.44652 -14.19622 -14.17108 -13.86346 -13.71096 -13.33734 -13.09180 -12.79370 -12.74336 -12.27804 -12.16405 -11.92961 -11.51302 -11.36568 -11.25361 -11.24524 -11.04778 -10.89227 -10.46826 -10.29808 -10.23159 -10.16919 -9.99111 -9.73215 -9.62733 -9.25431 -8.96330 -8.78954 -8.54111 -7.29724 -5.81012 -3.17349 0.64088 1.16922 2.02818 2.19261 2.82285 3.13167 3.34263 3.41481 3.42109 3.44378 3.72081 4.07789 4.16354 4.37505 4.47689 4.54013 4.55915 4.56501 4.74389 4.81625 4.94126 5.09450 5.13315 5.21601 5.26767 5.36278 5.47376 5.60481 5.68951 5.75403 5.83459 5.89772 5.92779 6.07799 6.10480 6.14588 6.15942 6.28035 6.33003 6.37496 6.47015 6.55817 6.65281 6.79450 7.01349 7.66242 7.67244 7.94178 8.32967 8.37764 9.16135 9.88438 10.07658 11.37044 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.002851 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.729237 B = 9819.980672 C =11795.653823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.164 3.836 12 H 0.090 0.910 13 N -0.704 5.704 14 C 0.559 3.441 15 O -0.535 6.535 16 C -0.089 4.089 17 C -0.118 4.118 18 C -0.085 4.085 19 C -0.189 4.189 20 C 0.116 3.884 21 O -0.288 6.288 22 C 0.039 3.961 23 C 0.519 3.481 24 N -0.852 5.852 25 O -0.515 6.515 26 C -0.087 4.087 27 C -0.163 4.163 28 C -0.170 4.170 29 C -0.185 4.185 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.404 0.596 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.403 0.597 41 H 0.409 0.591 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.577 4.214 -15.717 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.025 3.975 11 C 0.060 3.940 12 H 0.108 0.892 13 N -0.355 5.355 14 C 0.346 3.654 15 O -0.413 6.413 16 C -0.093 4.093 17 C -0.137 4.137 18 C -0.103 4.103 19 C -0.208 4.208 20 C 0.071 3.929 21 O -0.201 6.201 22 C -0.040 4.040 23 C 0.302 3.698 24 N -0.418 5.418 25 O -0.388 6.388 26 C -0.107 4.107 27 C -0.183 4.183 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.240 0.760 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.231 0.769 41 H 0.241 0.759 42 H 0.164 0.836 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.209 3.900 -14.076 26.582 hybrid contribution 0.097 1.589 -1.105 1.938 sum 22.306 5.489 -15.181 27.535 Atomic orbital electron populations 1.69697 1.05063 1.25860 1.57330 1.24651 0.95191 0.97110 1.01893 0.86624 0.79414 0.85138 0.77879 1.20972 1.21619 1.20290 1.19035 0.80444 0.94757 1.43307 0.89070 1.42712 1.04116 1.02089 1.91255 1.20906 0.86805 0.89854 0.99927 1.20923 0.95300 0.88101 0.89702 0.89172 1.45951 1.26228 1.42298 1.21007 1.18112 0.81107 0.79697 0.86532 1.90699 1.50533 1.67099 1.32997 1.19777 0.95968 0.98502 0.95005 1.21359 0.99508 0.99872 0.92964 1.20891 0.95938 0.94844 0.98619 1.21375 0.97603 1.03668 0.98154 1.18795 0.86950 0.92392 0.94722 1.86176 1.41482 1.53327 1.39083 1.22444 0.96995 0.94698 0.89895 1.20066 0.85872 0.79970 0.83886 1.43651 1.31645 1.46024 1.20518 1.90837 1.57435 1.64595 1.25951 1.20453 0.97237 0.94905 0.98087 1.22614 0.93759 0.98969 1.02949 1.22905 1.04313 1.00771 0.92729 1.23269 0.93917 1.04114 1.00885 0.93012 0.80419 0.94771 0.93680 0.75965 0.84868 0.84815 0.85179 0.88697 0.88671 0.76854 0.75919 0.83592 0.87634 0.88712 0.89080 0.89785 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.97 55.49 0.78 -28.12 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 7 C -0.25 -6.78 10.47 -15.06 -0.16 -6.94 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.38 5.24 -59.91 -0.31 -17.69 16 10 C 0.15 2.80 5.80 -4.05 -0.02 2.78 16 11 C 0.16 2.62 2.43 -67.93 -0.17 2.45 16 12 H 0.09 1.63 7.33 -51.93 -0.38 1.25 16 13 N -0.70 -10.66 4.45 -54.74 -0.24 -10.90 16 14 C 0.56 8.91 7.11 -12.32 -0.09 8.82 16 15 O -0.53 -9.84 13.37 5.33 0.07 -9.77 16 16 C -0.09 -1.24 5.87 -104.99 -0.62 -1.86 16 17 C -0.12 -1.37 9.54 -39.17 -0.37 -1.75 16 18 C -0.08 -0.81 10.03 -39.66 -0.40 -1.20 16 19 C -0.19 -1.70 9.03 -39.35 -0.36 -2.06 16 20 C 0.12 1.36 6.68 -39.28 -0.26 1.09 16 21 O -0.29 -3.37 9.67 -39.36 -0.38 -3.75 16 22 C 0.04 0.26 5.22 36.01 0.19 0.45 16 23 C 0.52 4.24 8.18 -10.98 -0.09 4.15 16 24 N -0.85 -2.76 8.87 31.22 0.28 -2.48 16 25 O -0.51 -7.15 17.34 -14.35 -0.25 -7.40 16 26 C -0.09 -1.20 9.53 -39.02 -0.37 -1.57 16 27 C -0.16 -2.22 5.36 -90.62 -0.49 -2.70 16 28 C -0.17 -2.17 10.18 -26.69 -0.27 -2.44 16 29 C -0.18 -2.49 9.74 -26.69 -0.26 -2.75 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.36 8.41 5.19 -40.82 -0.21 8.20 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.40 5.58 6.63 -40.82 -0.27 5.31 16 35 H 0.13 1.39 6.40 -52.49 -0.34 1.06 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.70 6.28 -52.49 -0.33 0.37 16 38 H 0.10 0.35 7.66 -51.93 -0.40 -0.05 16 39 H 0.10 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.40 -0.13 8.83 -40.82 -0.36 -0.49 16 41 H 0.41 1.08 8.93 -40.82 -0.36 0.72 16 42 H 0.15 2.15 7.65 -52.48 -0.40 1.75 16 43 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16 44 H 0.09 1.27 8.05 -51.93 -0.42 0.86 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -37.94 392.76 -8.94 -46.88 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.26 Total: 13.28 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -3.83 Total: -3.40 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.49 Total: -59.20 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.56 Total: -20.92 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.94 -8.94 -46.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498768528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.389 kcal (2) G-P(sol) polarization free energy of solvation -37.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds