Wall clock time and date at job start Wed Apr 1 2020 04:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00350 * 2 1 4 4 H 1.48496 * 109.47003 * 240.00010 * 3 2 1 5 5 H 1.48503 * 109.47119 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47068 * 119.99832 * 3 2 1 7 7 C 1.38813 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00459 * 157.94532 * 7 2 1 9 9 N 1.36939 * 119.99904 * 337.94890 * 7 2 1 10 10 C 1.46507 * 119.99917 * 324.91799 * 9 7 2 11 11 C 1.52998 * 109.47031 * 270.00053 * 10 9 7 12 12 N 1.46499 * 109.46826 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00197 * 180.02562 * 12 11 10 14 14 O 1.21558 * 119.99767 * 359.97438 * 13 12 11 15 15 C 1.47856 * 120.00261 * 180.02562 * 13 12 11 16 16 C 1.39604 * 120.11880 * 359.97438 * 15 13 12 17 17 C 1.37959 * 119.96554 * 180.02562 * 16 15 13 18 18 C 1.38287 * 120.21080 * 359.72031 * 17 16 15 19 19 C 1.38810 * 120.23393 * 0.54907 * 18 17 16 20 20 O 1.35915 * 119.98648 * 179.72476 * 19 18 17 21 21 C 1.42900 * 116.99450 * 359.73160 * 20 19 18 22 22 C 1.50707 * 109.46692 * 180.02562 * 21 20 19 23 23 N 1.34774 * 119.99824 * 179.72447 * 22 21 20 24 24 O 1.21275 * 120.00273 * 359.97438 * 22 21 20 25 25 C 1.38500 * 120.03245 * 359.45599 * 19 18 17 26 26 C 1.46496 * 120.00280 * 144.92008 * 9 7 2 27 27 C 1.53003 * 117.50048 * 3.23971 * 26 9 7 28 28 C 1.53002 * 117.49872 * 294.58086 * 26 9 7 29 29 H 0.96997 * 119.99585 * 355.76861 * 1 2 3 30 30 H 1.09005 * 109.46808 * 149.99832 * 10 9 7 31 31 H 1.08997 * 109.46859 * 30.00190 * 10 9 7 32 32 H 1.08992 * 109.47226 * 60.00311 * 11 10 9 33 33 H 1.08997 * 109.47411 * 299.99799 * 11 10 9 34 34 H 0.97005 * 120.00385 * 0.02562 * 12 11 10 35 35 H 1.07997 * 120.01443 * 359.97438 * 16 15 13 36 36 H 1.08008 * 119.89556 * 180.02562 * 17 16 15 37 37 H 1.07995 * 119.88364 * 180.28232 * 18 17 16 38 38 H 1.08991 * 109.47447 * 60.00259 * 21 20 19 39 39 H 1.09005 * 109.47262 * 299.99571 * 21 20 19 40 40 H 0.97006 * 120.00139 * 180.27090 * 23 22 21 41 41 H 0.97002 * 119.99997 * 0.27363 * 23 22 21 42 42 H 1.07995 * 120.10288 * 180.24989 * 25 19 18 43 43 H 1.08997 * 115.55288 * 148.90633 * 26 9 7 44 44 H 1.09007 * 117.49383 * 359.97438 * 27 26 9 45 45 H 1.08991 * 117.50640 * 145.02078 * 27 26 9 46 46 H 1.09000 * 117.49627 * 214.98205 * 28 26 9 47 47 H 1.09001 * 117.49731 * 359.97256 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0310 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4454 -2.2815 1.5532 11 6 1.1884 -2.4680 2.8776 12 7 0.2332 -2.4040 3.9865 13 6 0.6641 -2.5429 5.2560 14 8 1.8453 -2.7218 5.4807 15 6 -0.3000 -2.4789 6.3752 16 6 -1.6571 -2.2741 6.1198 17 6 -2.5538 -2.2143 7.1665 18 6 -2.1138 -2.3625 8.4691 19 6 -0.7656 -2.5610 8.7331 20 8 -0.3378 -2.7004 10.0157 21 6 -1.3296 -2.6263 11.0418 22 6 -0.6739 -2.8008 12.3875 23 7 -1.4185 -2.7612 13.5102 24 8 0.5245 -2.9722 12.4605 25 6 0.1433 -2.6226 7.6899 26 6 1.7037 -3.6308 -0.1889 27 6 2.7654 -3.6431 -1.2905 28 6 1.2873 -3.8146 -1.6496 29 1 -0.4849 0.8378 0.0620 30 1 -0.2971 -3.0713 1.4387 31 1 -0.0522 -1.3117 1.5491 32 1 1.9308 -1.6782 2.9920 33 1 1.6860 -3.4378 2.8817 34 1 -0.7094 -2.2616 3.8072 35 1 -2.0047 -2.1616 5.1035 36 1 -3.6036 -2.0562 6.9677 37 1 -2.8210 -2.3194 9.2842 38 1 -2.0673 -3.4144 10.8918 39 1 -1.8223 -1.6548 11.0014 40 1 -0.9960 -2.8696 14.3766 41 1 -2.3771 -2.6244 13.4518 42 1 1.1920 -2.7809 7.8937 43 1 1.6462 -4.5015 0.4642 44 1 3.2381 -2.6942 -1.5445 45 1 3.4060 -4.5219 -1.3624 46 1 0.9561 -4.8064 -1.9575 47 1 0.7875 -2.9789 -2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567442043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:37 Heat of formation + Delta-G solvation = -29.422211 kcal Electronic energy + Delta-G solvation = -29050.511404 eV Core-core repulsion = 24814.555687 eV Total energy + Delta-G solvation = -4235.955717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.81526 -39.86934 -38.99876 -37.26700 -36.99182 -34.80751 -34.28235 -33.26174 -31.51467 -31.09095 -30.37380 -28.55510 -27.61379 -24.72996 -23.69960 -22.67641 -21.84900 -21.41903 -21.19518 -20.26401 -19.77293 -18.80361 -18.16948 -17.17781 -16.81220 -16.61840 -16.29680 -16.10716 -15.71559 -15.53257 -15.19863 -14.94599 -14.65492 -14.54824 -14.13458 -13.99801 -13.90670 -13.52836 -13.06093 -13.02400 -12.63526 -12.55006 -12.17128 -11.91766 -11.58978 -11.44496 -11.33719 -11.04195 -10.76473 -10.72429 -10.46331 -10.33550 -10.29611 -10.14281 -9.89746 -9.69150 -9.64951 -9.30107 -9.24258 -8.60713 -8.53188 -8.46839 -6.65937 -5.86691 -3.46864 0.68447 1.17483 2.03189 2.20385 2.93628 3.25242 3.34714 3.40224 3.44712 3.58143 3.80852 4.16423 4.37377 4.41715 4.47643 4.56088 4.56548 4.85024 4.91373 4.95169 5.16124 5.25098 5.28407 5.32662 5.70412 5.89393 5.93918 6.01483 6.09350 6.10415 6.15006 6.16943 6.20367 6.26030 6.36810 6.49147 6.51540 6.60399 6.65580 6.82113 6.96984 7.02760 7.05390 7.20284 7.50639 7.66648 7.75070 7.86829 8.39545 8.51450 9.07003 9.69740 10.24476 11.09698 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.001902 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.703834 B =14720.762533 C =15174.348480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.011 3.989 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.546 5.546 10 C 0.136 3.864 11 C 0.098 3.902 12 N -0.711 5.711 13 C 0.549 3.451 14 O -0.538 6.538 15 C -0.085 4.085 16 C -0.121 4.121 17 C -0.086 4.086 18 C -0.192 4.192 19 C 0.117 3.883 20 O -0.288 6.288 21 C 0.039 3.961 22 C 0.519 3.481 23 N -0.852 5.852 24 O -0.514 6.514 25 C -0.089 4.089 26 C 0.118 3.882 27 C -0.195 4.195 28 C -0.220 4.220 29 H 0.255 0.745 30 H 0.032 0.968 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.409 0.591 41 H 0.403 0.597 42 H 0.146 0.854 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 -5.474 21.709 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.189 4.189 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.263 5.263 10 C 0.008 3.992 11 C -0.027 4.027 12 N -0.362 5.362 13 C 0.335 3.665 14 O -0.416 6.416 15 C -0.088 4.088 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.211 4.211 19 C 0.072 3.928 20 O -0.201 6.201 21 C -0.040 4.040 22 C 0.302 3.698 23 N -0.419 5.419 24 O -0.388 6.388 25 C -0.108 4.108 26 C 0.010 3.990 27 C -0.233 4.233 28 C -0.261 4.261 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.241 0.759 41 H 0.231 0.769 42 H 0.164 0.836 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.957 -5.567 21.667 24.910 hybrid contribution -0.720 1.022 0.251 1.275 sum -11.678 -4.545 21.918 25.247 Atomic orbital electron populations 1.70026 1.05479 1.26243 1.50907 1.25122 0.95048 0.98820 0.99930 0.86453 0.79303 0.83123 0.78502 1.20600 1.21556 1.20685 1.19065 0.94544 0.85412 1.39748 0.91434 1.43206 1.49182 1.01707 1.32212 1.21113 0.91016 1.03636 0.83385 1.22385 0.92704 1.01277 0.86309 1.46010 1.12270 1.72070 1.05851 1.18165 0.87793 0.77636 0.82937 1.90780 1.17084 1.49190 1.84544 1.19887 0.93818 1.01853 0.93247 1.21329 0.92081 1.00590 0.99992 1.20869 0.99917 0.98086 0.91527 1.21350 0.94141 1.07120 0.98492 1.18815 0.92557 0.97932 0.83471 1.86185 1.34129 1.87718 1.12050 1.22436 0.91511 1.03880 0.86154 1.20075 0.87408 0.76554 0.85808 1.43653 1.12227 1.77330 1.08648 1.90841 1.14517 1.46390 1.87008 1.20493 1.00582 1.00670 0.89094 1.21244 1.00645 0.89951 0.87200 1.23044 0.91921 1.01979 1.06384 1.23362 0.97443 1.00682 1.04614 0.93464 0.94957 0.87618 0.91335 0.92894 0.76781 0.84930 0.84940 0.85261 0.88723 0.88704 0.75923 0.76875 0.83602 0.89417 0.88404 0.90661 0.91173 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 11.33 55.49 0.63 -23.37 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 3 Si 0.90 21.21 29.61 -169.99 -5.03 16.18 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.26 -6.76 8.63 -15.06 -0.13 -6.89 16 8 H 0.07 1.79 6.55 -52.49 -0.34 1.44 16 9 N -0.55 -13.00 2.78 -165.66 -0.46 -13.46 16 10 C 0.14 2.93 5.45 -4.04 -0.02 2.91 16 11 C 0.10 1.97 6.00 -4.04 -0.02 1.94 16 12 N -0.71 -11.86 5.51 -61.25 -0.34 -12.20 16 13 C 0.55 9.59 7.77 -12.32 -0.10 9.50 16 14 O -0.54 -11.48 16.35 5.32 0.09 -11.39 16 15 C -0.08 -1.19 5.87 -104.99 -0.62 -1.80 16 16 C -0.12 -1.31 9.54 -39.17 -0.37 -1.68 16 17 C -0.09 -0.73 10.02 -39.67 -0.40 -1.13 16 18 C -0.19 -1.61 9.03 -39.35 -0.36 -1.97 16 19 C 0.12 1.34 6.68 -39.27 -0.26 1.08 16 20 O -0.29 -3.33 9.67 -39.38 -0.38 -3.71 16 21 C 0.04 0.25 5.22 36.01 0.19 0.44 16 22 C 0.52 4.11 8.18 -10.98 -0.09 4.02 16 23 N -0.85 -2.51 8.87 31.22 0.28 -2.23 16 24 O -0.51 -7.08 17.34 -14.35 -0.25 -7.33 16 25 C -0.09 -1.24 9.53 -39.02 -0.37 -1.61 16 26 C 0.12 2.49 6.56 -67.93 -0.45 2.05 16 27 C -0.20 -3.83 9.80 -26.69 -0.26 -4.09 16 28 C -0.22 -4.41 10.36 -26.69 -0.28 -4.68 16 29 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 30 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.11 2.55 5.36 -51.93 -0.28 2.27 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.40 5.48 6.50 -40.82 -0.27 5.21 16 35 H 0.13 1.21 6.40 -52.49 -0.34 0.87 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.13 0.61 6.28 -52.49 -0.33 0.28 16 38 H 0.09 0.33 7.64 -51.93 -0.40 -0.07 16 39 H 0.10 0.34 7.67 -51.93 -0.40 -0.06 16 40 H 0.41 0.98 8.93 -40.82 -0.36 0.61 16 41 H 0.40 -0.28 8.83 -40.82 -0.36 -0.64 16 42 H 0.15 2.24 7.65 -52.49 -0.40 1.84 16 43 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -35.95 397.85 -9.41 -45.37 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.32 Total: 7.89 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.62 Total: -1.73 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.11 Total: -51.26 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.54 Total: -22.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.95 -9.41 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567442043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.944 kcal (2) G-P(sol) polarization free energy of solvation -35.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds