Wall clock time and date at job start Wed Apr 1 2020 04:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00350 * 2 1 4 4 H 1.48496 * 109.47003 * 240.00010 * 3 2 1 5 5 H 1.48503 * 109.47119 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47068 * 119.99832 * 3 2 1 7 7 C 1.38813 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00459 * 157.94532 * 7 2 1 9 9 N 1.36939 * 119.99904 * 337.94890 * 7 2 1 10 10 C 1.46507 * 119.99917 * 324.91799 * 9 7 2 11 11 C 1.52998 * 109.47031 * 270.00053 * 10 9 7 12 12 N 1.46499 * 109.46826 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00197 * 180.02562 * 12 11 10 14 14 O 1.21558 * 119.99767 * 359.97438 * 13 12 11 15 15 C 1.47856 * 120.00261 * 180.02562 * 13 12 11 16 16 C 1.39604 * 120.11880 * 359.97438 * 15 13 12 17 17 C 1.37959 * 119.96554 * 180.02562 * 16 15 13 18 18 C 1.38287 * 120.21080 * 359.72031 * 17 16 15 19 19 C 1.38810 * 120.23393 * 0.54907 * 18 17 16 20 20 O 1.35915 * 119.98648 * 179.72476 * 19 18 17 21 21 C 1.42900 * 116.99450 * 359.73160 * 20 19 18 22 22 C 1.50707 * 109.46692 * 180.02562 * 21 20 19 23 23 N 1.34774 * 119.99824 * 179.72447 * 22 21 20 24 24 O 1.21275 * 120.00273 * 359.97438 * 22 21 20 25 25 C 1.38500 * 120.03245 * 359.45599 * 19 18 17 26 26 C 1.46496 * 120.00280 * 144.92008 * 9 7 2 27 27 C 1.53003 * 117.50048 * 3.23971 * 26 9 7 28 28 C 1.53002 * 117.49872 * 294.58086 * 26 9 7 29 29 H 0.96997 * 119.99585 * 355.76861 * 1 2 3 30 30 H 1.09005 * 109.46808 * 149.99832 * 10 9 7 31 31 H 1.08997 * 109.46859 * 30.00190 * 10 9 7 32 32 H 1.08992 * 109.47226 * 60.00311 * 11 10 9 33 33 H 1.08997 * 109.47411 * 299.99799 * 11 10 9 34 34 H 0.97005 * 120.00385 * 0.02562 * 12 11 10 35 35 H 1.07997 * 120.01443 * 359.97438 * 16 15 13 36 36 H 1.08008 * 119.89556 * 180.02562 * 17 16 15 37 37 H 1.07995 * 119.88364 * 180.28232 * 18 17 16 38 38 H 1.08991 * 109.47447 * 60.00259 * 21 20 19 39 39 H 1.09005 * 109.47262 * 299.99571 * 21 20 19 40 40 H 0.97006 * 120.00139 * 180.27090 * 23 22 21 41 41 H 0.97002 * 119.99997 * 0.27363 * 23 22 21 42 42 H 1.07995 * 120.10288 * 180.24989 * 25 19 18 43 43 H 1.08997 * 115.55288 * 148.90633 * 26 9 7 44 44 H 1.09007 * 117.49383 * 359.97438 * 27 26 9 45 45 H 1.08991 * 117.50640 * 145.02078 * 27 26 9 46 46 H 1.09000 * 117.49627 * 214.98205 * 28 26 9 47 47 H 1.09001 * 117.49731 * 359.97256 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0310 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4454 -2.2815 1.5532 11 6 1.1884 -2.4680 2.8776 12 7 0.2332 -2.4040 3.9865 13 6 0.6641 -2.5429 5.2560 14 8 1.8453 -2.7218 5.4807 15 6 -0.3000 -2.4789 6.3752 16 6 -1.6571 -2.2741 6.1198 17 6 -2.5538 -2.2143 7.1665 18 6 -2.1138 -2.3625 8.4691 19 6 -0.7656 -2.5610 8.7331 20 8 -0.3378 -2.7004 10.0157 21 6 -1.3296 -2.6263 11.0418 22 6 -0.6739 -2.8008 12.3875 23 7 -1.4185 -2.7612 13.5102 24 8 0.5245 -2.9722 12.4605 25 6 0.1433 -2.6226 7.6899 26 6 1.7037 -3.6308 -0.1889 27 6 2.7654 -3.6431 -1.2905 28 6 1.2873 -3.8146 -1.6496 29 1 -0.4849 0.8378 0.0620 30 1 -0.2971 -3.0713 1.4387 31 1 -0.0522 -1.3117 1.5491 32 1 1.9308 -1.6782 2.9920 33 1 1.6860 -3.4378 2.8817 34 1 -0.7094 -2.2616 3.8072 35 1 -2.0047 -2.1616 5.1035 36 1 -3.6036 -2.0562 6.9677 37 1 -2.8210 -2.3194 9.2842 38 1 -2.0673 -3.4144 10.8918 39 1 -1.8223 -1.6548 11.0014 40 1 -0.9960 -2.8696 14.3766 41 1 -2.3771 -2.6244 13.4518 42 1 1.1920 -2.7809 7.8937 43 1 1.6462 -4.5015 0.4642 44 1 3.2381 -2.6942 -1.5445 45 1 3.4060 -4.5219 -1.3624 46 1 0.9561 -4.8064 -1.9575 47 1 0.7875 -2.9789 -2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567442043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:36 Heat of formation + Delta-G solvation = -56.356926 kcal Electronic energy + Delta-G solvation = -29051.679381 eV Core-core repulsion = 24814.555687 eV Total energy + Delta-G solvation = -4237.123694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63443 -40.86570 -39.95624 -38.85043 -38.00502 -36.39063 -35.02816 -34.80219 -32.86990 -32.22975 -31.47044 -29.31356 -29.08230 -26.46466 -24.92190 -23.57794 -23.26542 -22.87024 -22.17613 -21.58609 -21.24682 -19.80270 -18.65078 -18.29231 -17.85007 -17.48978 -17.38605 -17.24269 -17.03110 -16.83050 -16.44238 -16.33547 -16.13241 -15.69564 -15.39176 -14.96502 -14.87530 -14.66644 -14.50415 -14.43102 -13.89392 -13.77295 -13.48298 -13.27529 -12.95566 -12.82565 -12.64247 -12.50644 -12.19073 -12.14564 -12.10134 -11.91947 -11.68962 -11.38558 -11.16054 -11.12221 -10.90582 -10.75514 -10.49961 -10.24845 -9.96243 -9.33177 -8.57942 -7.84711 -5.48170 -0.24242 0.36294 1.43060 1.46713 1.48113 1.52815 1.61769 1.79644 2.12965 2.48950 2.81003 2.84314 3.12936 3.39971 3.50476 3.70563 3.71082 3.91109 4.02857 4.11749 4.14117 4.14964 4.29042 4.30039 4.35754 4.40143 4.48361 4.53581 4.61921 4.78725 4.86836 4.94524 5.03746 5.15902 5.20980 5.28284 5.30155 5.35103 5.42601 5.54850 5.58482 5.66534 5.75299 5.82073 6.24416 6.41583 6.44387 6.53578 7.10343 7.17005 7.26713 7.79956 8.29197 9.07226 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.001902 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.703834 B =14720.762533 C =15174.348480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.030 4.030 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.264 4.264 8 H 0.058 0.942 9 N -0.564 5.564 10 C 0.144 3.856 11 C 0.119 3.881 12 N -0.701 5.701 13 C 0.546 3.454 14 O -0.589 6.589 15 C -0.107 4.107 16 C -0.120 4.120 17 C -0.073 4.073 18 C -0.168 4.168 19 C 0.114 3.886 20 O -0.324 6.324 21 C 0.031 3.969 22 C 0.513 3.487 23 N -0.824 5.824 24 O -0.588 6.588 25 C -0.121 4.121 26 C 0.097 3.903 27 C -0.186 4.186 28 C -0.209 4.209 29 H 0.254 0.746 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.413 0.587 35 H 0.148 0.852 36 H 0.177 0.823 37 H 0.180 0.820 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.413 0.587 41 H 0.424 0.576 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.551 -6.012 22.988 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.228 4.228 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.394 4.394 8 H 0.075 0.925 9 N -0.281 5.281 10 C 0.017 3.983 11 C -0.007 4.007 12 N -0.352 5.352 13 C 0.335 3.665 14 O -0.471 6.471 15 C -0.110 4.110 16 C -0.139 4.139 17 C -0.091 4.091 18 C -0.187 4.187 19 C 0.069 3.931 20 O -0.238 6.238 21 C -0.047 4.047 22 C 0.298 3.702 23 N -0.391 5.391 24 O -0.468 6.468 25 C -0.141 4.141 26 C -0.011 4.011 27 C -0.224 4.224 28 C -0.250 4.250 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.251 0.749 35 H 0.166 0.834 36 H 0.195 0.805 37 H 0.197 0.803 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.246 0.754 41 H 0.257 0.743 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.900 -6.107 22.967 28.049 hybrid contribution 0.380 1.137 -0.015 1.199 sum -14.520 -4.969 22.952 27.610 Atomic orbital electron populations 1.70103 1.06141 1.26500 1.52074 1.25648 0.95745 1.00906 1.00509 0.85671 0.78233 0.80535 0.78021 1.20260 1.21276 1.21450 1.19166 0.94339 0.86728 1.39172 0.92466 1.43389 1.49418 1.02154 1.33154 1.20982 0.90957 1.02985 0.83381 1.21893 0.92362 0.99546 0.86903 1.45791 1.12553 1.71865 1.05029 1.18810 0.87871 0.76119 0.83738 1.90740 1.19529 1.51570 1.85286 1.19555 0.94558 1.05295 0.91585 1.21579 0.90655 0.99779 1.01871 1.21386 1.01429 0.95665 0.90620 1.21877 0.93072 1.03641 1.00090 1.18808 0.93414 0.97953 0.82940 1.86146 1.36973 1.87838 1.12802 1.22877 0.90914 1.07213 0.83691 1.20548 0.86710 0.75530 0.87452 1.43469 1.13171 1.74814 1.07632 1.90818 1.17650 1.50267 1.88048 1.20365 0.99843 1.03347 0.90543 1.21552 1.02024 0.89479 0.88063 1.23057 0.92076 1.02278 1.05025 1.23268 0.97440 1.01164 1.03125 0.93662 0.93148 0.89770 0.94999 0.93347 0.74876 0.83389 0.80546 0.80292 0.84902 0.85069 0.75432 0.74301 0.87156 0.87105 0.90740 0.87270 0.87789 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.86 11.33 21.65 0.25 -49.61 16 2 C -0.03 -1.62 4.96 84.86 0.42 -1.20 16 3 Si 0.95 44.54 29.61 68.60 2.03 46.57 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 7 C -0.26 -14.16 8.63 84.03 0.73 -13.43 16 8 H 0.06 3.13 6.55 -2.91 -0.02 3.11 16 9 N -0.56 -27.19 2.78 -678.02 -1.88 -29.07 16 10 C 0.14 6.30 5.45 86.38 0.47 6.77 16 11 C 0.12 4.96 6.00 86.38 0.52 5.48 16 12 N -0.70 -24.00 5.51 -465.97 -2.57 -26.57 16 13 C 0.55 20.16 7.77 86.79 0.67 20.83 16 14 O -0.59 -27.28 16.35 -3.90 -0.06 -27.34 16 15 C -0.11 -3.05 5.87 -20.10 -0.12 -3.17 16 16 C -0.12 -2.31 9.54 22.53 0.21 -2.09 16 17 C -0.07 -0.89 10.02 22.22 0.22 -0.67 16 18 C -0.17 -2.02 9.03 22.42 0.20 -1.81 16 19 C 0.11 2.46 6.68 22.47 0.15 2.61 16 20 O -0.32 -7.27 9.67 -73.56 -0.71 -7.98 16 21 C 0.03 0.29 5.22 71.24 0.37 0.66 16 22 C 0.51 7.42 8.18 87.66 0.72 8.14 16 23 N -0.82 -2.74 8.87 -173.53 -1.54 -4.28 16 24 O -0.59 -16.83 17.34 16.02 0.28 -16.55 16 25 C -0.12 -3.58 9.53 22.63 0.22 -3.36 16 26 C 0.10 3.99 6.56 44.99 0.30 4.28 16 27 C -0.19 -7.11 9.80 30.62 0.30 -6.81 16 28 C -0.21 -8.11 10.36 30.62 0.32 -7.80 16 29 H 0.25 13.54 8.32 -92.71 -0.77 12.77 16 30 H 0.05 1.99 8.07 -2.38 -0.02 1.98 16 31 H 0.08 4.14 5.36 -2.39 -0.01 4.12 16 32 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 11.26 6.50 -92.70 -0.60 10.65 16 35 H 0.15 2.29 6.40 -2.91 -0.02 2.27 16 36 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 37 H 0.18 0.33 6.28 -2.91 -0.02 0.31 16 38 H 0.13 0.21 7.64 -2.39 -0.02 0.20 16 39 H 0.13 0.26 7.67 -2.38 -0.02 0.24 16 40 H 0.41 1.22 8.93 -92.70 -0.83 0.39 16 41 H 0.42 -2.29 8.83 -92.71 -0.82 -3.10 16 42 H 0.11 3.90 7.65 -2.91 -0.02 3.88 16 43 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 44 H 0.07 3.20 6.37 -2.38 -0.02 3.19 16 45 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -86.76 397.85 0.29 -86.47 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -1.20 Total: 19.95 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.70 Total: 8.42 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -5.74 Total: -109.54 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.50 Total: -51.87 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -86.76 0.29 -86.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567442043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.118 kcal (2) G-P(sol) polarization free energy of solvation -86.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds