Wall clock time and date at job start Wed Apr 1 2020 04:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86794 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47330 * 269.99652 * 3 2 1 5 5 H 1.48505 * 109.47116 * 29.99970 * 3 2 1 6 6 H 1.48494 * 109.47189 * 149.99660 * 3 2 1 7 7 C 1.38951 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00268 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99676 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99945 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99906 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00133 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47412 * 179.97438 * 12 10 9 14 14 C 1.47475 * 110.99994 * 265.97821 * 13 12 10 15 15 C 1.53516 * 87.93128 * 221.29366 * 14 13 12 16 16 C 1.47471 * 111.00266 * 170.00009 * 13 12 10 17 17 H 1.09002 * 113.47632 * 23.88238 * 16 13 12 18 18 C 1.52997 * 113.47848 * 253.47388 * 16 13 12 19 19 N 1.46506 * 109.47289 * 54.99894 * 18 16 13 20 20 C 1.34774 * 120.00072 * 180.02562 * 19 18 16 21 21 O 1.21284 * 120.00066 * 0.02562 * 20 19 18 22 22 C 1.50696 * 119.99838 * 180.02562 * 20 19 18 23 23 O 1.42903 * 109.47284 * 180.02562 * 22 20 19 24 24 C 1.35899 * 116.99972 * 179.97438 * 23 22 20 25 25 C 1.38732 * 120.05670 * 359.72731 * 24 23 22 26 26 C 1.38148 * 119.93941 * 179.69807 * 25 24 23 27 27 C 1.38265 * 120.05618 * 0.59623 * 26 25 24 28 28 C 1.38262 * 120.11554 * 359.67931 * 27 26 25 29 29 C 1.38146 * 120.05100 * 0.02562 * 28 27 26 30 30 H 0.96996 * 119.99666 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00347 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47005 * 60.00151 * 12 10 9 33 33 H 1.08994 * 109.47489 * 300.00006 * 12 10 9 34 34 H 1.08998 * 113.48076 * 336.05131 * 14 13 12 35 35 H 1.08996 * 113.48219 * 106.47215 * 14 13 12 36 36 H 1.09001 * 114.16776 * 272.38210 * 15 14 13 37 37 H 1.08997 * 114.17574 * 139.66729 * 15 14 13 38 38 H 1.09001 * 109.47289 * 294.99766 * 18 16 13 39 39 H 1.09004 * 109.47261 * 175.00022 * 18 16 13 40 40 H 0.97001 * 119.99251 * 0.02562 * 19 18 16 41 41 H 1.09004 * 109.47043 * 299.99952 * 22 20 19 42 42 H 1.09001 * 109.47324 * 59.99585 * 22 20 19 43 43 H 1.07998 * 120.02852 * 359.97438 * 25 24 23 44 44 H 1.08005 * 119.96938 * 180.31233 * 26 25 24 45 45 H 1.08005 * 119.94295 * 179.69718 * 27 26 25 46 46 H 1.07993 * 119.97798 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.02606 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0011 11 8 3.4472 -3.4211 0.0011 12 6 5.5607 -2.3708 0.0011 13 7 6.0504 -3.7558 0.0017 14 6 6.3176 -4.2212 1.3753 15 6 7.5911 -4.8915 0.8409 16 6 7.5048 -3.8022 -0.2374 17 1 8.0191 -2.8801 0.0336 18 6 7.8771 -4.2982 -1.6360 19 7 7.1985 -3.4773 -2.6420 20 6 7.3784 -3.7326 -3.9531 21 8 8.1017 -4.6422 -4.3001 22 6 6.6808 -2.8879 -4.9878 23 8 7.0275 -3.3519 -6.2942 24 6 6.4783 -2.6936 -7.3486 25 6 5.6189 -1.6266 -7.1304 26 6 5.0669 -0.9551 -8.2042 27 6 5.3606 -1.3535 -9.4952 28 6 6.2123 -2.4202 -9.7153 29 6 6.7717 -3.0910 -8.6450 30 1 -0.4849 0.8400 -0.0004 31 1 3.8648 -0.3634 0.0007 32 1 5.9240 -1.8569 0.8911 33 1 5.9241 -1.8570 -0.8888 34 1 6.5152 -3.4114 2.0775 35 1 5.5761 -4.9290 1.7460 36 1 7.4390 -5.9036 0.4659 37 1 8.4542 -4.7996 1.5002 38 1 7.5686 -5.3377 -1.7470 39 1 8.9559 -4.2228 -1.7731 40 1 6.6198 -2.7501 -2.3643 41 1 5.6020 -2.9625 -4.8505 42 1 6.9901 -1.8485 -4.8770 43 1 5.3851 -1.3183 -6.1221 44 1 4.4018 -0.1212 -8.0349 45 1 4.9242 -0.8303 -10.3333 46 1 6.4399 -2.7297 -10.7246 47 1 7.4372 -3.9240 -8.8174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569381804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:50 Heat of formation + Delta-G solvation = -57.173384 kcal Electronic energy + Delta-G solvation = -29748.667934 eV Core-core repulsion = 25511.508835 eV Total energy + Delta-G solvation = -4237.159099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74062 -41.28564 -40.27721 -39.68444 -38.21037 -35.99143 -35.67538 -33.76131 -32.31417 -32.05022 -31.32154 -30.23282 -28.23864 -27.61982 -25.18438 -24.29761 -23.60341 -23.03860 -21.71864 -21.27139 -20.65385 -20.27967 -19.43540 -18.47278 -17.72462 -17.51837 -17.35608 -17.15686 -16.77047 -16.63865 -16.42822 -16.29990 -15.81787 -15.46964 -15.21859 -15.19405 -14.93074 -14.68666 -14.40770 -14.34945 -14.18257 -14.00373 -13.71696 -13.56165 -13.09019 -12.94359 -12.63802 -12.50374 -12.40771 -12.35016 -12.14749 -12.01747 -11.94077 -11.87885 -11.62898 -11.48595 -11.00892 -10.45662 -10.23277 -10.18931 -9.97466 -9.72433 -9.23443 -8.39827 -6.01146 0.37077 0.45231 1.30368 1.36585 1.38782 1.45760 1.50064 1.97717 2.24233 2.50803 2.70353 2.82319 3.14757 3.22680 3.48607 3.55566 3.78058 3.84197 3.96936 3.99148 4.01355 4.03178 4.11107 4.24345 4.27932 4.32765 4.38646 4.39954 4.45317 4.51481 4.63158 4.69836 4.84464 4.87881 5.02040 5.06966 5.20018 5.26946 5.31792 5.43561 5.46387 5.55021 5.58735 5.79726 5.93710 6.07562 6.26259 6.40357 6.61336 6.90693 7.04322 7.41805 8.00781 8.78098 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006761 B = 0.003249 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4140.706367 B = 8616.360152 C =12151.588469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.965 3.035 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.228 1.228 7 C -0.327 4.327 8 H 0.051 0.949 9 N -0.592 5.592 10 C 0.452 3.548 11 O -0.610 6.610 12 C 0.016 3.984 13 N -0.476 5.476 14 C -0.004 4.004 15 C -0.116 4.116 16 C 0.019 3.981 17 H 0.119 0.881 18 C 0.140 3.860 19 N -0.707 5.707 20 C 0.515 3.485 21 O -0.568 6.568 22 C 0.038 3.962 23 O -0.316 6.316 24 C 0.104 3.896 25 C -0.220 4.220 26 C -0.088 4.088 27 C -0.161 4.161 28 C -0.082 4.082 29 C -0.169 4.169 30 H 0.278 0.722 31 H 0.390 0.610 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.409 0.591 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.155 0.845 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.281 3.130 -9.409 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.151 1.151 7 C -0.456 4.456 8 H 0.069 0.931 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.493 6.493 12 C -0.116 4.116 13 N -0.199 5.199 14 C -0.133 4.133 15 C -0.154 4.154 16 C -0.091 4.091 17 H 0.137 0.863 18 C 0.017 3.983 19 N -0.361 5.361 20 C 0.301 3.699 21 O -0.447 6.447 22 C -0.040 4.040 23 O -0.230 6.230 24 C 0.059 3.941 25 C -0.238 4.238 26 C -0.106 4.106 27 C -0.179 4.179 28 C -0.099 4.099 29 C -0.188 4.188 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.245 0.755 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.173 0.827 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.845 1.365 -10.079 23.194 hybrid contribution -0.651 1.579 0.879 1.921 sum 20.194 2.945 -9.200 22.386 Atomic orbital electron populations 1.69821 1.08304 1.29213 1.50450 1.26147 0.96433 1.02805 0.96107 0.85363 0.79520 0.76509 0.80091 1.17807 1.20477 1.15111 1.18958 0.81646 0.94711 1.50311 0.93119 1.42029 1.05650 1.07577 1.68165 1.20896 0.90786 0.83190 0.81168 1.90572 1.71317 1.33016 1.54432 1.22574 0.90948 0.93118 1.04965 1.68809 1.14018 1.17904 1.19148 1.23868 0.97926 1.00430 0.91065 1.23104 0.97782 0.98001 0.96535 1.23860 0.89466 1.01267 0.94465 0.86333 1.21451 0.97221 0.94498 0.85174 1.45729 1.49595 1.36198 1.04528 1.20344 0.81340 0.84307 0.83899 1.90712 1.39830 1.32698 1.81438 1.22614 1.01214 0.99566 0.80589 1.86088 1.67564 1.56194 1.13139 1.19358 0.94351 0.92666 0.87683 1.21543 1.02035 0.98637 1.01621 1.21336 0.97898 0.99037 0.92302 1.21470 1.00198 0.98615 0.97627 1.21315 0.95101 0.94484 0.99030 1.20710 1.04853 1.03476 0.89715 0.91231 0.77450 0.88341 0.86574 0.89237 0.92134 0.89365 0.86877 0.92709 0.89414 0.75460 0.87900 0.85814 0.84232 0.83773 0.83355 0.82724 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.51 13.96 21.66 0.30 -55.21 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 3 Si 0.97 36.58 27.74 68.60 1.90 38.48 16 4 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.23 -7.01 6.52 99.48 0.65 -6.36 16 7 C -0.33 -18.54 10.16 84.04 0.85 -17.69 16 8 H 0.05 3.49 7.39 -2.91 -0.02 3.47 16 9 N -0.59 -26.05 5.09 -306.98 -1.56 -27.61 16 10 C 0.45 19.04 7.85 87.65 0.69 19.73 16 11 O -0.61 -33.18 16.01 -3.08 -0.05 -33.23 16 12 C 0.02 0.40 5.05 85.56 0.43 0.83 16 13 N -0.48 -12.26 5.39 -906.78 -4.89 -17.14 16 14 C 0.00 -0.09 7.71 83.58 0.64 0.55 16 15 C -0.12 -1.77 8.00 30.94 0.25 -1.52 16 16 C 0.02 0.30 3.23 42.19 0.14 0.44 16 17 H 0.12 1.21 7.91 -2.39 -0.02 1.19 16 18 C 0.14 2.77 5.81 86.38 0.50 3.27 16 19 N -0.71 -15.12 5.46 -463.05 -2.53 -17.65 16 20 C 0.52 13.61 7.91 87.66 0.69 14.30 16 21 O -0.57 -19.87 16.50 16.00 0.26 -19.60 16 22 C 0.04 0.84 5.22 71.23 0.37 1.21 16 23 O -0.32 -8.78 9.67 -73.38 -0.71 -9.49 16 24 C 0.10 2.54 6.69 22.51 0.15 2.69 16 25 C -0.22 -4.58 9.04 22.37 0.20 -4.37 16 26 C -0.09 -1.57 10.04 22.25 0.22 -1.34 16 27 C -0.16 -2.56 10.04 22.28 0.22 -2.34 16 28 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 29 C -0.17 -3.68 9.99 22.37 0.22 -3.46 16 30 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.39 13.72 5.76 -92.71 -0.53 13.18 16 32 H 0.10 1.92 7.30 -2.39 -0.02 1.90 16 33 H 0.12 2.14 6.27 -2.39 -0.01 2.13 16 34 H 0.09 1.59 7.42 -2.39 -0.02 1.57 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.53 7.94 -2.39 -0.02 1.51 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.34 7.88 -2.39 -0.02 1.33 16 39 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.41 7.51 6.22 -92.71 -0.58 6.93 16 41 H 0.10 2.12 7.65 -2.38 -0.02 2.10 16 42 H 0.12 1.86 7.68 -2.39 -0.02 1.84 16 43 H 0.14 2.46 6.30 -2.91 -0.02 2.44 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -88.42 393.49 -1.14 -89.56 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -0.15 Total: 41.17 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 6.28 Total: 10.74 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -8.67 Total: -117.61 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -0.49 Total: -62.33 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 1.90 Total: 38.48 kcal Total: -88.42 -1.14 -89.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569381804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.382 kcal (2) G-P(sol) polarization free energy of solvation -88.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds