Wall clock time and date at job start Wed Apr 1 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86804 * 120.00232 * 2 1 4 4 H 1.48501 * 109.46734 * 359.97438 * 3 2 1 5 5 H 1.48491 * 109.47311 * 119.99510 * 3 2 1 6 6 H 1.48500 * 109.46833 * 240.00003 * 3 2 1 7 7 C 1.40051 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99618 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00172 * 354.98547 * 9 7 2 11 11 N 1.34781 * 119.99589 * 174.98903 * 9 7 2 12 12 C 1.47076 * 120.88472 * 4.48293 * 11 9 7 13 13 C 1.53694 * 108.27735 * 128.75167 * 12 11 9 14 14 N 1.46906 * 109.25207 * 54.08661 * 13 12 11 15 15 C 1.46902 * 110.99987 * 172.60635 * 14 13 12 16 16 C 1.50707 * 109.46943 * 313.57160 * 15 14 13 17 17 N 1.36426 * 125.45131 * 263.98520 * 16 15 14 18 18 H 0.97000 * 124.81444 * 359.94854 * 17 16 15 19 19 C 1.34628 * 110.38069 * 179.97438 * 17 16 15 20 20 C 1.37845 * 108.20532 * 0.02562 * 19 17 16 21 21 C 1.47109 * 127.02572 * 180.02562 * 20 19 17 22 22 O 1.21546 * 120.00085 * 183.64927 * 21 20 19 23 23 O 1.34792 * 119.99941 * 3.64768 * 21 20 19 24 24 C 1.34426 * 125.45989 * 83.68004 * 16 15 14 25 25 C 1.50705 * 126.81424 * 0.03499 * 24 16 15 26 26 C 1.52995 * 117.49771 * 129.61712 * 25 24 16 27 27 C 1.53003 * 117.49542 * 60.95899 * 25 24 16 28 28 C 1.46897 * 111.26794 * 296.75450 * 14 13 12 29 29 C 1.47078 * 120.87899 * 184.76205 * 11 9 7 30 30 H 0.97006 * 119.99779 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.62921 * 248.52659 * 12 11 9 32 32 H 1.09003 * 109.62651 * 9.10723 * 12 11 9 33 33 H 1.08993 * 109.65020 * 294.08408 * 13 12 11 34 34 H 1.08998 * 109.44656 * 173.95882 * 13 12 11 35 35 H 1.09006 * 109.46958 * 73.56583 * 15 14 13 36 36 H 1.08994 * 109.47167 * 193.56922 * 15 14 13 37 37 H 1.08000 * 125.90191 * 179.97438 * 19 17 16 38 38 H 0.96698 * 117.00175 * 180.02562 * 23 21 20 39 39 H 1.08994 * 115.55058 * 275.28905 * 25 24 16 40 40 H 1.09003 * 117.49919 * 0.02562 * 26 25 24 41 41 H 1.09000 * 117.49959 * 145.02025 * 26 25 24 42 42 H 1.08994 * 117.49627 * 214.97766 * 27 25 24 43 43 H 1.09000 * 117.50054 * 359.97438 * 27 25 24 44 44 H 1.09007 * 109.49097 * 303.14564 * 28 14 13 45 45 H 1.09005 * 109.49266 * 183.06506 * 28 14 13 46 46 H 1.09009 * 109.62912 * 350.90194 * 29 11 9 47 47 H 1.09007 * 109.62991 * 111.28096 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0945 1.6963 -1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0617 -2.4825 0.0922 11 7 1.9451 -3.6455 -0.1009 12 6 3.4156 -3.6719 -0.1141 13 6 3.8890 -4.6847 0.9406 14 7 3.2428 -5.9804 0.6923 15 6 3.7978 -7.0218 1.5672 16 6 5.3025 -6.9376 1.5563 17 7 6.1310 -7.6835 0.7700 18 1 5.8357 -8.3515 0.1316 19 6 7.4168 -7.3616 1.0060 20 6 7.4443 -6.3790 1.9723 21 6 8.6350 -5.7269 2.5390 22 8 8.5149 -4.9177 3.4379 23 8 9.8592 -6.0267 2.0612 24 6 6.0428 -6.1115 2.3155 25 6 5.5346 -5.1117 3.3221 26 6 6.1569 -5.1376 4.7196 27 6 4.7299 -5.6492 4.5073 28 6 1.7847 -5.8867 0.8449 29 6 1.2252 -4.9236 -0.2075 30 1 -0.4850 0.8401 -0.0004 31 1 3.7675 -3.9742 -1.1004 32 1 3.8018 -2.6818 0.1280 33 1 3.6214 -4.3296 1.9357 34 1 4.9709 -4.7992 0.8739 35 1 3.4330 -6.8746 2.5838 36 1 3.4861 -8.0024 1.2077 37 1 8.2780 -7.7984 0.5225 38 1 10.6115 -5.5730 2.4653 39 1 5.2471 -4.1415 2.9172 40 1 6.9342 -5.8775 4.9108 41 1 6.2784 -4.1844 5.2341 42 1 3.9133 -5.0324 4.8822 43 1 4.5677 -6.7259 4.5586 44 1 1.5466 -5.5148 1.8415 45 1 1.3406 -6.8727 0.7083 46 1 0.1624 -4.7614 -0.0272 47 1 1.3678 -5.3422 -1.2038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:21 Heat of formation + Delta-G solvation = -32.568475 kcal Electronic energy + Delta-G solvation = -31547.466314 eV Core-core repulsion = 27311.374164 eV Total energy + Delta-G solvation = -4236.092150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72382 -39.65129 -38.71430 -37.06918 -36.42871 -35.85347 -33.57944 -32.46888 -31.18718 -30.95886 -29.83542 -27.58518 -26.08913 -24.43044 -23.65748 -23.10196 -22.68540 -22.23244 -20.77589 -20.14083 -18.82751 -18.70820 -17.88127 -17.53158 -16.62940 -16.07710 -15.93323 -15.65066 -15.33690 -15.04209 -14.82412 -14.40882 -14.32641 -14.15001 -13.95643 -13.88998 -13.66145 -13.43541 -12.94751 -12.52179 -12.44240 -11.98479 -11.74145 -11.63213 -11.57072 -11.37921 -11.29219 -11.15459 -10.95487 -10.87288 -10.74567 -10.69347 -10.43330 -10.25625 -10.21888 -9.94243 -9.89065 -8.91129 -8.83681 -8.50577 -8.02752 -7.57030 -7.15983 -6.18337 -4.63038 1.36024 2.06497 2.82746 3.15239 3.17221 3.22100 3.23134 3.23857 3.91319 4.07699 4.18175 4.56743 4.62702 4.64565 4.66121 4.77127 5.00570 5.10978 5.13979 5.25084 5.37496 5.51226 5.55496 5.59297 5.68326 5.71814 5.77203 5.80492 5.86339 5.88021 6.01288 6.07574 6.14307 6.24779 6.29406 6.34258 6.46074 6.49585 6.52613 6.54741 6.70688 6.74078 7.12817 7.19564 7.28894 7.47022 7.63720 7.99237 8.15377 8.38369 9.03737 9.46023 10.58996 10.77634 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003300 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.181907 B = 8483.936899 C = 9653.345600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.580 6.580 11 N -0.644 5.644 12 C 0.128 3.872 13 C 0.034 3.966 14 N -0.531 5.531 15 C 0.119 3.881 16 C 0.028 3.972 17 N -0.533 5.533 18 H 0.421 0.579 19 C 0.078 3.922 20 C -0.220 4.220 21 C 0.550 3.450 22 O -0.510 6.510 23 O -0.524 6.524 24 C -0.061 4.061 25 C -0.090 4.090 26 C -0.138 4.138 27 C -0.183 4.183 28 C 0.046 3.954 29 C 0.126 3.874 30 H 0.269 0.731 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.181 0.819 38 H 0.409 0.591 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.478 -17.471 3.674 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.462 6.462 11 N -0.382 5.382 12 C 0.003 3.997 13 C -0.094 4.094 14 N -0.257 5.257 15 C -0.009 4.009 16 C -0.082 4.082 17 N -0.126 5.126 18 H 0.258 0.742 19 C -0.060 4.060 20 C -0.229 4.229 21 C 0.395 3.605 22 O -0.398 6.398 23 O -0.336 6.336 24 C -0.067 4.067 25 C -0.108 4.108 26 C -0.175 4.175 27 C -0.220 4.220 28 C -0.083 4.083 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.199 0.801 38 H 0.267 0.733 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.219 -17.541 3.228 23.446 hybrid contribution 0.929 0.904 0.641 1.446 sum 16.149 -16.637 3.869 23.506 Atomic orbital electron populations 1.70005 1.07062 1.27367 1.35311 1.25712 0.94589 1.00243 0.92551 0.86479 0.79899 0.81159 0.79542 1.20545 1.19195 1.19228 1.20940 0.93540 0.89291 1.54325 0.91031 1.18230 0.86870 0.82206 0.76068 1.90583 1.14388 1.86117 1.55156 1.48239 1.04783 1.05680 1.79534 1.21592 0.82510 0.98830 0.96734 1.23004 0.99145 0.88592 0.98701 1.62148 1.04724 1.06375 1.52406 1.20597 0.86522 0.96707 0.97074 1.19820 0.92605 0.98153 0.97619 1.41495 1.05703 1.32577 1.32806 0.74174 1.22306 0.86986 0.98233 0.98510 1.19473 0.90640 1.05936 1.06857 1.19882 0.82014 0.79045 0.79521 1.90911 1.86615 1.33136 1.29171 1.84564 1.17247 1.67700 1.64107 1.19354 0.89397 0.98445 0.99503 1.20445 1.04219 0.98208 0.87954 1.22733 0.94466 1.02590 0.97759 1.23063 0.95742 1.00865 1.02364 1.22524 0.86813 0.99685 0.99268 1.21172 0.97864 0.84506 0.96281 0.92066 0.93556 0.88904 0.93966 0.89841 0.92175 0.90412 0.80146 0.73306 0.86474 0.89155 0.88988 0.88746 0.89294 0.94446 0.90958 0.89579 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.84 55.55 0.66 -22.47 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 3 Si 0.90 20.28 29.56 -169.99 -5.02 15.26 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.54 -15.35 8.86 -35.63 -0.32 -15.67 16 8 H 0.07 1.85 5.73 -52.49 -0.30 1.55 16 9 C 0.56 16.02 7.63 -12.99 -0.10 15.92 16 10 O -0.58 -18.78 14.49 5.20 0.08 -18.70 16 11 N -0.64 -14.76 3.00 -173.84 -0.52 -15.29 16 12 C 0.13 2.47 6.50 -3.37 -0.02 2.45 16 13 C 0.03 0.54 3.79 -3.46 -0.01 0.53 16 14 N -0.53 -7.48 4.77 -235.46 -1.12 -8.60 16 15 C 0.12 1.32 5.55 -4.97 -0.03 1.29 16 16 C 0.03 0.30 5.59 -81.89 -0.46 -0.16 16 17 N -0.53 -4.24 5.89 -8.88 -0.05 -4.29 16 18 H 0.42 2.11 8.96 -40.82 -0.37 1.74 16 19 C 0.08 0.65 11.80 -16.47 -0.19 0.45 16 20 C -0.22 -2.53 6.32 -103.01 -0.65 -3.19 16 21 C 0.55 6.52 8.32 34.33 0.29 6.80 16 22 O -0.51 -7.38 14.47 -19.30 -0.28 -7.66 16 23 O -0.52 -4.39 13.28 -40.74 -0.54 -4.93 16 24 C -0.06 -0.75 4.23 -102.53 -0.43 -1.19 16 25 C -0.09 -1.20 3.92 -91.77 -0.36 -1.56 16 26 C -0.14 -1.77 8.24 -26.70 -0.22 -1.99 16 27 C -0.18 -2.19 9.15 -26.69 -0.24 -2.44 16 28 C 0.05 0.70 5.58 -3.71 -0.02 0.68 16 29 C 0.13 2.47 6.61 -3.61 -0.02 2.44 16 30 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.88 5.45 -51.93 -0.28 1.60 16 33 H 0.04 0.73 6.52 -51.93 -0.34 0.39 16 34 H 0.08 1.27 5.05 -51.93 -0.26 1.01 16 35 H 0.06 0.70 6.67 -51.93 -0.35 0.35 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.41 1.74 9.11 45.56 0.42 2.15 16 39 H 0.12 1.74 6.31 -51.93 -0.33 1.41 16 40 H 0.09 1.20 7.40 -51.93 -0.38 0.81 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 0.99 7.92 -51.93 -0.41 0.57 16 44 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 46 H 0.09 1.86 7.04 -51.92 -0.37 1.50 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -37.38 375.69 -9.52 -46.90 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.49 Total: 7.33 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.89 Total: 6.78 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -1.04 Total: -50.64 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.75 Total: -31.29 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.38 -9.52 -46.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.336 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds