Wall clock time and date at job start Wed Apr 1 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86804 * 120.00232 * 2 1 4 4 H 1.48501 * 109.46734 * 359.97438 * 3 2 1 5 5 H 1.48491 * 109.47311 * 119.99510 * 3 2 1 6 6 H 1.48500 * 109.46833 * 240.00003 * 3 2 1 7 7 C 1.40051 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99618 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00172 * 354.98547 * 9 7 2 11 11 N 1.34781 * 119.99589 * 174.98903 * 9 7 2 12 12 C 1.47076 * 120.88472 * 4.48293 * 11 9 7 13 13 C 1.53694 * 108.27735 * 128.75167 * 12 11 9 14 14 N 1.46906 * 109.25207 * 54.08661 * 13 12 11 15 15 C 1.46902 * 110.99987 * 172.60635 * 14 13 12 16 16 C 1.50707 * 109.46943 * 313.57160 * 15 14 13 17 17 N 1.36426 * 125.45131 * 263.98520 * 16 15 14 18 18 H 0.97000 * 124.81444 * 359.94854 * 17 16 15 19 19 C 1.34628 * 110.38069 * 179.97438 * 17 16 15 20 20 C 1.37845 * 108.20532 * 0.02562 * 19 17 16 21 21 C 1.47109 * 127.02572 * 180.02562 * 20 19 17 22 22 O 1.21546 * 120.00085 * 183.64927 * 21 20 19 23 23 O 1.34792 * 119.99941 * 3.64768 * 21 20 19 24 24 C 1.34426 * 125.45989 * 83.68004 * 16 15 14 25 25 C 1.50705 * 126.81424 * 0.03499 * 24 16 15 26 26 C 1.52995 * 117.49771 * 129.61712 * 25 24 16 27 27 C 1.53003 * 117.49542 * 60.95899 * 25 24 16 28 28 C 1.46897 * 111.26794 * 296.75450 * 14 13 12 29 29 C 1.47078 * 120.87899 * 184.76205 * 11 9 7 30 30 H 0.97006 * 119.99779 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.62921 * 248.52659 * 12 11 9 32 32 H 1.09003 * 109.62651 * 9.10723 * 12 11 9 33 33 H 1.08993 * 109.65020 * 294.08408 * 13 12 11 34 34 H 1.08998 * 109.44656 * 173.95882 * 13 12 11 35 35 H 1.09006 * 109.46958 * 73.56583 * 15 14 13 36 36 H 1.08994 * 109.47167 * 193.56922 * 15 14 13 37 37 H 1.08000 * 125.90191 * 179.97438 * 19 17 16 38 38 H 0.96698 * 117.00175 * 180.02562 * 23 21 20 39 39 H 1.08994 * 115.55058 * 275.28905 * 25 24 16 40 40 H 1.09003 * 117.49919 * 0.02562 * 26 25 24 41 41 H 1.09000 * 117.49959 * 145.02025 * 26 25 24 42 42 H 1.08994 * 117.49627 * 214.97766 * 27 25 24 43 43 H 1.09000 * 117.50054 * 359.97438 * 27 25 24 44 44 H 1.09007 * 109.49097 * 303.14564 * 28 14 13 45 45 H 1.09005 * 109.49266 * 183.06506 * 28 14 13 46 46 H 1.09009 * 109.62912 * 350.90194 * 29 11 9 47 47 H 1.09007 * 109.62991 * 111.28096 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0945 1.6963 -1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0617 -2.4825 0.0922 11 7 1.9451 -3.6455 -0.1009 12 6 3.4156 -3.6719 -0.1141 13 6 3.8890 -4.6847 0.9406 14 7 3.2428 -5.9804 0.6923 15 6 3.7978 -7.0218 1.5672 16 6 5.3025 -6.9376 1.5563 17 7 6.1310 -7.6835 0.7700 18 1 5.8357 -8.3515 0.1316 19 6 7.4168 -7.3616 1.0060 20 6 7.4443 -6.3790 1.9723 21 6 8.6350 -5.7269 2.5390 22 8 8.5149 -4.9177 3.4379 23 8 9.8592 -6.0267 2.0612 24 6 6.0428 -6.1115 2.3155 25 6 5.5346 -5.1117 3.3221 26 6 6.1569 -5.1376 4.7196 27 6 4.7299 -5.6492 4.5073 28 6 1.7847 -5.8867 0.8449 29 6 1.2252 -4.9236 -0.2075 30 1 -0.4850 0.8401 -0.0004 31 1 3.7675 -3.9742 -1.1004 32 1 3.8018 -2.6818 0.1280 33 1 3.6214 -4.3296 1.9357 34 1 4.9709 -4.7992 0.8739 35 1 3.4330 -6.8746 2.5838 36 1 3.4861 -8.0024 1.2077 37 1 8.2780 -7.7984 0.5225 38 1 10.6115 -5.5730 2.4653 39 1 5.2471 -4.1415 2.9172 40 1 6.9342 -5.8775 4.9108 41 1 6.2784 -4.1844 5.2341 42 1 3.9133 -5.0324 4.8822 43 1 4.5677 -6.7259 4.5586 44 1 1.5466 -5.5148 1.8415 45 1 1.3406 -6.8727 0.7083 46 1 0.1624 -4.7614 -0.0272 47 1 1.3678 -5.3422 -1.2038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608179485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:20 Heat of formation + Delta-G solvation = -61.253825 kcal Electronic energy + Delta-G solvation = -31548.710204 eV Core-core repulsion = 27311.374164 eV Total energy + Delta-G solvation = -4237.336040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51009 -40.53836 -40.21628 -38.41274 -37.81522 -36.67249 -35.26076 -34.61356 -32.34821 -31.95894 -31.01683 -29.10926 -27.82442 -25.62476 -24.61086 -24.47325 -23.66593 -23.26799 -22.36712 -20.98252 -20.50994 -19.62103 -18.73735 -18.53206 -18.17930 -17.81394 -16.97797 -16.70092 -16.39817 -16.23859 -16.01177 -15.95574 -15.86958 -15.49331 -15.43354 -15.02819 -14.60238 -14.43655 -14.32634 -13.87188 -13.73464 -13.39280 -13.22755 -12.98091 -12.78462 -12.70472 -12.62202 -12.53892 -12.47687 -12.23530 -12.18741 -12.01400 -11.94147 -11.80492 -11.61609 -11.24472 -10.93128 -10.86046 -9.80139 -9.70216 -9.55232 -9.11628 -8.92139 -8.30114 -6.84645 0.60977 1.21890 1.37722 1.40938 1.52070 2.16864 2.22329 2.36391 2.45206 2.51051 2.78333 2.93858 3.10164 3.59551 3.76487 3.86915 4.00435 4.02188 4.07824 4.14766 4.16683 4.34338 4.35306 4.40671 4.48547 4.55355 4.69106 4.70180 4.73402 4.79856 4.84292 4.89734 4.94195 4.98389 5.07714 5.13713 5.21756 5.26481 5.30481 5.36684 5.66178 5.73385 5.80105 5.90009 6.02932 6.03878 6.13562 6.42741 6.60674 6.87132 7.26518 7.41529 8.46048 8.66277 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003300 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.181907 B = 8483.936899 C = 9653.345600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.032 3.968 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.257 1.257 6 H -0.253 1.253 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.543 3.457 10 O -0.632 6.632 11 N -0.646 5.646 12 C 0.125 3.875 13 C 0.053 3.947 14 N -0.525 5.525 15 C 0.121 3.879 16 C 0.024 3.976 17 N -0.517 5.517 18 H 0.439 0.561 19 C 0.113 3.887 20 C -0.259 4.259 21 C 0.550 3.450 22 O -0.550 6.550 23 O -0.513 6.513 24 C -0.082 4.082 25 C -0.097 4.097 26 C -0.138 4.138 27 C -0.171 4.171 28 C 0.059 3.941 29 C 0.122 3.878 30 H 0.274 0.726 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.220 0.780 38 H 0.426 0.574 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.019 0.981 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.112 -19.629 2.682 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.197 1.197 5 H -0.181 1.181 6 H -0.177 1.177 7 C -0.607 4.607 8 H 0.107 0.893 9 C 0.349 3.651 10 O -0.519 6.519 11 N -0.383 5.383 12 C 0.002 3.998 13 C -0.076 4.076 14 N -0.250 5.250 15 C -0.006 4.006 16 C -0.086 4.086 17 N -0.112 5.112 18 H 0.280 0.720 19 C -0.027 4.027 20 C -0.267 4.267 21 C 0.397 3.603 22 O -0.442 6.442 23 O -0.327 6.327 24 C -0.088 4.088 25 C -0.116 4.116 26 C -0.175 4.175 27 C -0.208 4.208 28 C -0.070 4.070 29 C -0.002 4.002 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.236 0.764 38 H 0.287 0.713 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.037 0.963 45 H 0.131 0.869 46 H 0.074 0.926 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.913 -19.783 2.210 26.779 hybrid contribution 0.192 1.451 0.907 1.722 sum 18.106 -18.332 3.117 25.954 Atomic orbital electron populations 1.70174 1.09440 1.28919 1.36588 1.26926 0.95466 1.04740 0.91204 0.85180 0.78381 0.75166 0.80303 1.19700 1.18092 1.17661 1.21457 0.94626 0.90029 1.54618 0.89328 1.18590 0.86521 0.84152 0.75872 1.90528 1.16482 1.87404 1.57523 1.48104 1.06413 1.05574 1.78216 1.21725 0.80189 0.99379 0.98540 1.22724 0.99722 0.88862 0.96254 1.62131 1.03694 1.05861 1.53363 1.20664 0.86731 0.96766 0.96450 1.19627 0.92455 0.98497 0.98033 1.41479 1.05240 1.32174 1.32271 0.72010 1.22819 0.87881 0.95855 0.96163 1.19637 0.90150 1.08016 1.08924 1.20051 0.82961 0.78381 0.78898 1.90894 1.87269 1.35000 1.31002 1.84507 1.16922 1.67533 1.63700 1.19395 0.90569 0.98888 0.99981 1.20348 1.04759 0.97877 0.88572 1.22616 0.94888 1.02153 0.97855 1.23054 0.94964 1.01436 1.01372 1.22360 0.87861 1.00249 0.96511 1.21335 0.96249 0.83957 0.98627 0.91599 0.92294 0.90518 0.95817 0.88566 0.92558 0.87073 0.76377 0.71286 0.88935 0.89552 0.89824 0.89239 0.87959 0.96307 0.86935 0.92584 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.28 11.84 21.84 0.26 -51.03 16 2 C 0.03 1.81 5.50 85.31 0.47 2.28 16 3 Si 0.99 42.09 29.56 68.60 2.03 44.12 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.57 -33.17 8.86 24.83 0.22 -32.95 16 8 H 0.09 4.66 5.73 -2.91 -0.02 4.65 16 9 C 0.54 32.42 7.63 86.36 0.66 33.08 16 10 O -0.63 -43.24 14.49 -4.29 -0.06 -43.30 16 11 N -0.65 -30.42 3.00 -822.14 -2.47 -32.89 16 12 C 0.13 4.84 6.50 86.50 0.56 5.40 16 13 C 0.05 1.66 3.79 86.54 0.33 1.99 16 14 N -0.53 -13.57 4.77 -898.86 -4.28 -17.86 16 15 C 0.12 2.28 5.55 85.56 0.47 2.76 16 16 C 0.02 0.44 5.59 40.97 0.23 0.67 16 17 N -0.52 -5.91 5.89 -182.02 -1.07 -6.98 16 18 H 0.44 2.04 8.96 -92.71 -0.83 1.21 16 19 C 0.11 1.39 11.80 84.17 0.99 2.38 16 20 C -0.26 -5.39 6.32 -18.82 -0.12 -5.50 16 21 C 0.55 12.34 8.32 70.15 0.58 12.93 16 22 O -0.55 -16.03 14.47 19.69 0.28 -15.74 16 23 O -0.51 -7.40 13.28 -57.04 -0.76 -8.16 16 24 C -0.08 -1.91 4.23 -18.51 -0.08 -1.98 16 25 C -0.10 -2.61 3.92 -11.54 -0.05 -2.65 16 26 C -0.14 -3.63 8.24 30.62 0.25 -3.38 16 27 C -0.17 -4.10 9.15 30.62 0.28 -3.82 16 28 C 0.06 1.73 5.58 86.38 0.48 2.21 16 29 C 0.12 4.80 6.61 86.35 0.57 5.37 16 30 H 0.27 15.53 8.29 -92.70 -0.77 14.76 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 3.18 5.45 -2.39 -0.01 3.17 16 33 H 0.02 0.84 6.52 -2.39 -0.02 0.82 16 34 H 0.10 2.83 5.05 -2.39 -0.01 2.82 16 35 H 0.06 1.16 6.67 -2.38 -0.02 1.14 16 36 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.22 0.97 8.06 -2.91 -0.02 0.94 16 38 H 0.43 2.78 9.11 -74.06 -0.67 2.11 16 39 H 0.09 2.90 6.31 -2.39 -0.02 2.88 16 40 H 0.09 2.33 7.40 -2.39 -0.02 2.32 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.10 2.15 7.92 -2.39 -0.02 2.13 16 44 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.11 2.45 8.11 -2.38 -0.02 2.43 16 46 H 0.06 2.54 7.04 -2.38 -0.02 2.52 16 47 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -87.15 375.69 -0.67 -87.82 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.45 Total: 25.23 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 5.86 Total: 18.78 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -7.57 Total: -108.75 kcal Atomic # 8 Polarization: -66.67 SS G_CDS: -0.53 Total: -67.20 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -87.15 -0.67 -87.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.565 kcal (2) G-P(sol) polarization free energy of solvation -87.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds