Wall clock time and date at job start Wed Apr 1 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48497 * 109.47351 * 240.00033 * 3 2 1 5 5 H 1.48504 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47280 * 119.99941 * 3 2 1 7 7 C 1.37878 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.46205 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31176 * 181.38323 * 10 9 7 12 12 N 1.46917 * 108.77882 * 305.36464 * 11 10 9 13 13 C 1.34781 * 120.62963 * 233.58681 * 12 11 10 14 14 O 1.21278 * 119.99914 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99692 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.46703 * 179.97438 * 15 13 12 17 17 N 1.46502 * 109.47277 * 180.02562 * 16 15 13 18 18 C 1.34736 * 120.00136 * 180.02562 * 17 16 15 19 19 O 1.34266 * 120.00113 * 354.31707 * 18 17 16 20 20 C 1.41532 * 119.99981 * 174.31863 * 18 17 16 21 21 N 1.33539 * 120.02024 * 170.32385 * 20 18 17 22 22 C 1.30904 * 121.64055 * 180.28027 * 21 20 18 23 23 C 1.39501 * 121.48819 * 359.97438 * 22 21 20 24 24 C 1.36511 * 119.85246 * 0.02562 * 23 22 21 25 25 C 1.40990 * 118.47114 * 0.02562 * 24 23 22 26 26 O 1.22431 * 120.70476 * 179.97438 * 25 24 23 27 27 C 1.46928 * 118.74271 * 53.85598 * 12 11 10 28 28 C 1.53043 * 109.45678 * 300.07276 * 9 7 2 29 29 H 0.97002 * 120.00283 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.45786 * 60.02311 * 9 7 2 31 31 H 1.09003 * 109.49630 * 61.43200 * 10 9 7 32 32 H 1.09001 * 109.52114 * 301.35200 * 10 9 7 33 33 H 1.09004 * 109.58549 * 185.57295 * 11 10 9 34 34 H 1.09006 * 109.70403 * 65.22282 * 11 10 9 35 35 H 1.09005 * 109.46859 * 60.00781 * 15 13 12 36 36 H 1.08989 * 109.47543 * 299.99890 * 15 13 12 37 37 H 1.09003 * 109.47099 * 60.00155 * 16 15 13 38 38 H 1.09003 * 109.47202 * 300.00374 * 16 15 13 39 39 H 0.97006 * 119.99417 * 359.97438 * 17 16 15 40 40 H 0.96697 * 117.00642 * 359.97438 * 19 18 17 41 41 H 1.08002 * 119.26494 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.07216 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.76379 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.58485 * 65.92796 * 27 12 11 45 45 H 1.09001 * 109.59027 * 186.35676 * 27 12 11 46 46 H 1.09011 * 109.49696 * 298.56141 * 28 9 7 47 47 H 1.08996 * 109.50441 * 58.62997 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 -0.0354 12 7 0.5224 -5.0089 1.0813 13 6 0.5116 -6.0352 1.9549 14 8 1.2949 -6.9517 1.8235 15 6 -0.4732 -6.0433 3.0957 16 6 -0.2761 -7.3102 3.9306 17 7 -1.2337 -7.3184 5.0392 18 6 -1.2446 -8.3444 5.9125 19 8 -0.4582 -9.4124 5.7033 20 6 -2.0850 -8.2965 7.0502 21 7 -2.2439 -9.3833 7.8097 22 6 -3.0175 -9.3760 8.8657 23 6 -3.7146 -8.2305 9.2503 24 6 -3.5965 -7.0849 8.5174 25 6 -2.7631 -7.0975 7.3802 26 8 -2.6277 -6.0932 6.6932 27 6 -0.4239 -3.8941 1.2244 28 6 0.3705 -2.5794 1.2486 29 1 -0.4851 0.8400 0.0004 30 1 0.6245 -2.5567 -0.8905 31 1 2.8557 -3.6193 0.9019 32 1 2.8888 -3.5916 -0.8779 33 1 2.1753 -5.8175 0.0641 34 1 0.9375 -5.0737 -0.9787 35 1 -1.4884 -6.0241 2.6994 36 1 -0.3109 -5.1662 3.7220 37 1 0.7392 -7.3299 4.3268 38 1 -0.4386 -8.1872 3.3040 39 1 -1.8594 -6.5847 5.1450 40 1 0.0980 -9.4000 4.9124 41 1 -3.1178 -10.2768 9.4530 42 1 -4.3470 -8.2502 10.1256 43 1 -4.1292 -6.1895 8.8020 44 1 -1.1153 -3.8913 0.3816 45 1 -0.9799 -4.0039 2.1555 46 1 0.9984 -2.5470 2.1391 47 1 -0.3217 -1.7375 1.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624986024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:15 Heat of formation + Delta-G solvation = -61.646233 kcal Electronic energy + Delta-G solvation = -29848.227827 eV Core-core repulsion = 25610.874771 eV Total energy + Delta-G solvation = -4237.353056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.42246 -40.11231 -39.58820 -37.42931 -37.10767 -36.10150 -33.71608 -33.03552 -31.96789 -31.10728 -30.22952 -29.46290 -26.71254 -25.76681 -23.94995 -23.03755 -22.86287 -22.30146 -22.14023 -20.26475 -19.62925 -18.41420 -18.13996 -17.20603 -16.81031 -16.67437 -16.32448 -16.21930 -15.65959 -15.62407 -15.11781 -14.81027 -14.64443 -14.53134 -14.18084 -14.08363 -13.46706 -13.33330 -13.19210 -13.02507 -12.92744 -12.58687 -12.55812 -12.45769 -12.39008 -12.07431 -11.72624 -11.42942 -11.00236 -10.89364 -10.76784 -10.58204 -10.53790 -10.24146 -9.92745 -9.72365 -9.67056 -9.31670 -9.08764 -8.98802 -8.49239 -8.24243 -7.64579 -6.12821 -4.19353 0.02532 1.71959 1.99462 2.12834 2.52736 2.59651 3.22267 3.23755 3.29224 3.31769 3.96293 3.99430 4.24004 4.33060 4.34946 4.45454 4.69115 4.81897 4.92041 4.96296 5.11514 5.12591 5.16096 5.19453 5.36174 5.44464 5.60110 5.61222 5.75772 5.89677 5.97028 6.07653 6.08790 6.16697 6.25076 6.40986 6.48332 6.63410 6.68984 6.76238 6.86473 6.96026 7.11561 7.53298 7.64615 7.78388 7.82980 7.91549 8.04195 8.17831 8.28669 8.83721 9.46525 10.92741 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.002065 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.138930 B =13553.277536 C =14932.023662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.111 3.889 12 N -0.593 5.593 13 C 0.517 3.483 14 O -0.563 6.563 15 C -0.151 4.151 16 C 0.087 3.913 17 N -0.660 5.660 18 C 0.562 3.438 19 O -0.435 6.435 20 C -0.187 4.187 21 N -0.386 5.386 22 C 0.016 3.984 23 C -0.075 4.075 24 C -0.224 4.224 25 C 0.370 3.630 26 O -0.563 6.563 27 C 0.098 3.902 28 C -0.125 4.125 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.443 0.557 40 H 0.417 0.583 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 -17.452 10.843 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.324 5.324 13 C 0.304 3.696 14 O -0.443 6.443 15 C -0.191 4.191 16 C -0.036 4.036 17 N -0.307 5.307 18 C 0.378 3.622 19 O -0.230 6.230 20 C -0.312 4.312 21 N -0.095 5.095 22 C -0.164 4.164 23 C -0.096 4.096 24 C -0.251 4.251 25 C 0.271 3.729 26 O -0.458 6.458 27 C -0.024 4.024 28 C -0.163 4.163 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.299 0.701 40 H 0.277 0.723 41 H 0.169 0.831 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.952 -18.199 10.367 21.522 hybrid contribution 0.026 2.072 -0.106 2.074 sum -4.926 -16.127 10.261 19.740 Atomic orbital electron populations 1.69803 1.05861 1.26757 1.50608 1.24958 0.94896 0.99129 0.94934 0.86662 0.79648 0.83081 0.78656 1.20270 1.21243 1.20303 1.21145 0.92927 0.90502 1.50718 0.92716 1.18636 0.92623 0.91802 0.93941 1.22015 0.98945 0.94052 1.01155 1.21761 0.91678 0.99952 0.87684 1.48248 1.35668 1.20827 1.27643 1.19985 0.84322 0.82299 0.82988 1.90665 1.41978 1.36419 1.75262 1.21728 1.01690 0.98634 0.97044 1.21799 0.93303 1.00883 0.87652 1.46720 1.36130 1.23441 1.24370 1.20433 0.80496 0.76902 0.84318 1.84581 1.52149 1.37355 1.48936 1.18628 1.14641 0.96128 1.01785 1.67047 1.12268 1.27195 1.03014 1.22249 0.99374 0.98446 0.96349 1.22055 0.96000 0.93433 0.98086 1.22552 1.04185 0.99804 0.98589 1.17361 0.81997 0.86979 0.86545 1.90446 1.65585 1.36253 1.53469 1.22257 0.91544 0.87628 1.00969 1.22125 1.00064 0.94425 0.99710 0.92800 0.95399 0.92902 0.91947 0.90204 0.91927 0.87500 0.86998 0.88402 0.88747 0.70069 0.72339 0.83077 0.85437 0.84739 0.91455 0.91282 0.94102 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 11.31 55.43 0.63 -22.98 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.14 8.56 -34.44 -0.29 -13.43 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.05 1.08 2.06 -91.73 -0.19 0.89 16 10 C -0.12 -2.32 5.30 -26.61 -0.14 -2.46 16 11 C 0.11 1.79 6.43 -3.72 -0.02 1.77 16 12 N -0.59 -8.98 2.97 -172.50 -0.51 -9.49 16 13 C 0.52 6.94 7.70 -10.98 -0.08 6.86 16 14 O -0.56 -8.71 15.39 5.56 0.09 -8.63 16 15 C -0.15 -1.39 4.16 -27.88 -0.12 -1.51 16 16 C 0.09 0.61 4.29 -4.04 -0.02 0.60 16 17 N -0.66 -5.59 5.31 -60.40 -0.32 -5.91 16 18 C 0.56 5.42 7.81 -15.02 -0.12 5.30 16 19 O -0.44 -3.16 13.12 -14.66 -0.19 -3.35 16 20 C -0.19 -2.35 6.61 -84.57 -0.56 -2.91 16 21 N -0.39 -4.84 10.05 -10.77 -0.11 -4.95 16 22 C 0.02 0.17 11.17 -17.48 -0.20 -0.03 16 23 C -0.07 -0.71 10.04 -39.73 -0.40 -1.11 16 24 C -0.22 -2.65 10.09 -39.16 -0.40 -3.04 16 25 C 0.37 5.09 6.72 -37.24 -0.25 4.84 16 26 O -0.56 -8.59 14.44 4.52 0.07 -8.53 16 27 C 0.10 1.51 6.37 -3.48 -0.02 1.49 16 28 C -0.12 -2.53 5.17 -26.38 -0.14 -2.67 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.27 7.01 -51.93 -0.36 0.90 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 0.83 7.93 -51.93 -0.41 0.42 16 36 H 0.11 1.04 7.70 -51.94 -0.40 0.64 16 37 H 0.10 0.65 8.05 -51.93 -0.42 0.24 16 38 H 0.09 0.52 7.67 -51.93 -0.40 0.12 16 39 H 0.44 4.55 5.14 -40.87 -0.21 4.34 16 40 H 0.42 1.02 7.14 45.56 0.33 1.34 16 41 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 46 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 47 H 0.11 2.45 6.03 -51.93 -0.31 2.14 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -32.83 382.89 -8.49 -41.32 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.84 Total: 5.34 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.04 Total: -3.90 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.31 Total: -43.32 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.83 -8.49 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624986024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.327 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds