Wall clock time and date at job start Wed Apr 1 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48497 * 109.47351 * 240.00033 * 3 2 1 5 5 H 1.48504 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47280 * 119.99941 * 3 2 1 7 7 C 1.37878 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.46205 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31176 * 181.38323 * 10 9 7 12 12 N 1.46917 * 108.77882 * 305.36464 * 11 10 9 13 13 C 1.34781 * 120.62963 * 233.58681 * 12 11 10 14 14 O 1.21278 * 119.99914 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99692 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.46703 * 179.97438 * 15 13 12 17 17 N 1.46502 * 109.47277 * 180.02562 * 16 15 13 18 18 C 1.34736 * 120.00136 * 180.02562 * 17 16 15 19 19 O 1.34266 * 120.00113 * 354.31707 * 18 17 16 20 20 C 1.41532 * 119.99981 * 174.31863 * 18 17 16 21 21 N 1.33539 * 120.02024 * 170.32385 * 20 18 17 22 22 C 1.30904 * 121.64055 * 180.28027 * 21 20 18 23 23 C 1.39501 * 121.48819 * 359.97438 * 22 21 20 24 24 C 1.36511 * 119.85246 * 0.02562 * 23 22 21 25 25 C 1.40990 * 118.47114 * 0.02562 * 24 23 22 26 26 O 1.22431 * 120.70476 * 179.97438 * 25 24 23 27 27 C 1.46928 * 118.74271 * 53.85598 * 12 11 10 28 28 C 1.53043 * 109.45678 * 300.07276 * 9 7 2 29 29 H 0.97002 * 120.00283 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.45786 * 60.02311 * 9 7 2 31 31 H 1.09003 * 109.49630 * 61.43200 * 10 9 7 32 32 H 1.09001 * 109.52114 * 301.35200 * 10 9 7 33 33 H 1.09004 * 109.58549 * 185.57295 * 11 10 9 34 34 H 1.09006 * 109.70403 * 65.22282 * 11 10 9 35 35 H 1.09005 * 109.46859 * 60.00781 * 15 13 12 36 36 H 1.08989 * 109.47543 * 299.99890 * 15 13 12 37 37 H 1.09003 * 109.47099 * 60.00155 * 16 15 13 38 38 H 1.09003 * 109.47202 * 300.00374 * 16 15 13 39 39 H 0.97006 * 119.99417 * 359.97438 * 17 16 15 40 40 H 0.96697 * 117.00642 * 359.97438 * 19 18 17 41 41 H 1.08002 * 119.26494 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.07216 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.76379 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.58485 * 65.92796 * 27 12 11 45 45 H 1.09001 * 109.59027 * 186.35676 * 27 12 11 46 46 H 1.09011 * 109.49696 * 298.56141 * 28 9 7 47 47 H 1.08996 * 109.50441 * 58.62997 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 -0.0354 12 7 0.5224 -5.0089 1.0813 13 6 0.5116 -6.0352 1.9549 14 8 1.2949 -6.9517 1.8235 15 6 -0.4732 -6.0433 3.0957 16 6 -0.2761 -7.3102 3.9306 17 7 -1.2337 -7.3184 5.0392 18 6 -1.2446 -8.3444 5.9125 19 8 -0.4582 -9.4124 5.7033 20 6 -2.0850 -8.2965 7.0502 21 7 -2.2439 -9.3833 7.8097 22 6 -3.0175 -9.3760 8.8657 23 6 -3.7146 -8.2305 9.2503 24 6 -3.5965 -7.0849 8.5174 25 6 -2.7631 -7.0975 7.3802 26 8 -2.6277 -6.0932 6.6932 27 6 -0.4239 -3.8941 1.2244 28 6 0.3705 -2.5794 1.2486 29 1 -0.4851 0.8400 0.0004 30 1 0.6245 -2.5567 -0.8905 31 1 2.8557 -3.6193 0.9019 32 1 2.8888 -3.5916 -0.8779 33 1 2.1753 -5.8175 0.0641 34 1 0.9375 -5.0737 -0.9787 35 1 -1.4884 -6.0241 2.6994 36 1 -0.3109 -5.1662 3.7220 37 1 0.7392 -7.3299 4.3268 38 1 -0.4386 -8.1872 3.3040 39 1 -1.8594 -6.5847 5.1450 40 1 0.0980 -9.4000 4.9124 41 1 -3.1178 -10.2768 9.4530 42 1 -4.3470 -8.2502 10.1256 43 1 -4.1292 -6.1895 8.8020 44 1 -1.1153 -3.8913 0.3816 45 1 -0.9799 -4.0039 2.1555 46 1 0.9984 -2.5470 2.1391 47 1 -0.3217 -1.7375 1.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624986024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:14 Heat of formation + Delta-G solvation = -85.437785 kcal Electronic energy + Delta-G solvation = -29849.259506 eV Core-core repulsion = 25610.874771 eV Total energy + Delta-G solvation = -4238.384735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.16787 -41.22302 -40.37866 -38.55706 -38.16402 -36.84975 -35.36643 -33.88023 -33.20249 -32.33956 -31.58404 -30.34410 -28.16658 -26.81636 -25.04032 -24.28608 -23.82695 -23.54302 -22.91126 -21.51088 -20.53375 -19.62084 -18.91774 -18.57441 -17.94800 -17.59414 -17.41735 -17.09134 -16.78717 -16.56993 -16.47581 -15.92541 -15.50493 -15.43313 -15.04266 -14.98750 -14.88747 -14.61985 -14.53590 -14.17626 -13.99398 -13.90936 -13.52489 -13.31846 -13.28706 -13.13808 -12.98450 -12.90720 -12.79636 -12.49918 -12.15485 -11.95759 -11.54563 -11.49764 -11.41598 -11.06644 -11.02126 -10.73312 -10.48744 -10.40991 -9.84960 -9.58643 -8.50924 -8.09989 -6.22778 -0.71542 0.94354 1.21639 1.29129 1.40632 1.42110 1.48604 1.53461 1.91326 2.19655 2.42169 3.15412 3.16928 3.26771 3.46758 3.50988 3.77686 3.93550 4.07418 4.20027 4.24222 4.24813 4.26449 4.36302 4.39817 4.45632 4.48081 4.54367 4.57789 4.70898 4.76939 4.85733 4.88599 4.97319 5.17702 5.22225 5.28930 5.39074 5.41875 5.51004 5.62820 5.68365 5.91069 5.97798 6.13141 6.20426 6.37793 6.45684 6.87010 6.97038 7.06093 7.20530 7.45134 8.92859 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.002065 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.138930 B =13553.277536 C =14932.023662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.118 3.882 12 N -0.601 5.601 13 C 0.520 3.480 14 O -0.580 6.580 15 C -0.147 4.147 16 C 0.089 3.911 17 N -0.649 5.649 18 C 0.573 3.427 19 O -0.431 6.431 20 C -0.209 4.209 21 N -0.407 5.407 22 C 0.009 3.991 23 C -0.058 4.058 24 C -0.256 4.256 25 C 0.347 3.653 26 O -0.598 6.598 27 C 0.111 3.889 28 C -0.118 4.118 29 H 0.261 0.739 30 H 0.003 0.997 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.438 0.562 40 H 0.438 0.562 41 H 0.182 0.818 42 H 0.164 0.836 43 H 0.136 0.864 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.029 0.971 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -19.385 11.762 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.005 4.005 12 N -0.333 5.333 13 C 0.309 3.691 14 O -0.461 6.461 15 C -0.187 4.187 16 C -0.033 4.033 17 N -0.293 5.293 18 C 0.386 3.614 19 O -0.228 6.228 20 C -0.334 4.334 21 N -0.116 5.116 22 C -0.170 4.170 23 C -0.078 4.078 24 C -0.283 4.283 25 C 0.252 3.748 26 O -0.497 6.497 27 C -0.011 4.011 28 C -0.157 4.157 29 H 0.071 0.929 30 H 0.022 0.978 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.293 0.707 40 H 0.301 0.699 41 H 0.199 0.801 42 H 0.182 0.818 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.121 0.879 46 H 0.048 0.952 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.141 -20.174 11.286 23.681 hybrid contribution 0.172 2.591 -0.422 2.631 sum -4.969 -17.583 10.863 21.257 Atomic orbital electron populations 1.69921 1.06725 1.27179 1.51163 1.25608 0.95686 1.01858 0.94952 0.85813 0.78576 0.79872 0.78573 1.19973 1.20961 1.20125 1.21534 0.92891 0.92356 1.50587 0.93534 1.18617 0.93108 0.91908 0.93804 1.21850 0.98291 0.94472 1.00635 1.21592 0.91961 0.98143 0.88766 1.48245 1.35620 1.21377 1.28016 1.20549 0.84389 0.81203 0.83001 1.90659 1.42877 1.36924 1.75670 1.21719 1.01426 0.99877 0.95697 1.21893 0.93324 1.00795 0.87272 1.46686 1.35727 1.22747 1.24188 1.20117 0.80143 0.77416 0.83708 1.84564 1.51878 1.36135 1.50266 1.18787 1.15668 0.95914 1.03060 1.67107 1.13310 1.27255 1.03958 1.22878 0.98461 0.99771 0.95933 1.22391 0.95086 0.92099 0.98262 1.22697 1.05261 1.01095 0.99249 1.17724 0.82695 0.87243 0.87168 1.90411 1.67357 1.37158 1.54737 1.22054 0.90871 0.85225 1.02932 1.21880 0.99374 0.96395 0.98025 0.92941 0.97845 0.93921 0.91952 0.89563 0.91131 0.85455 0.86779 0.87548 0.86352 0.70724 0.69881 0.80098 0.81814 0.84573 0.91214 0.87881 0.95231 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.15 11.31 21.45 0.24 -48.91 16 2 C 0.02 0.95 5.30 84.66 0.45 1.40 16 3 Si 0.95 42.10 29.54 68.60 2.03 44.12 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.54 -27.95 8.56 25.60 0.22 -27.73 16 8 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 9 C 0.04 2.00 2.06 -11.51 -0.02 1.98 16 10 C -0.11 -4.31 5.30 30.67 0.16 -4.15 16 11 C 0.12 3.66 6.43 86.36 0.56 4.22 16 12 N -0.60 -17.15 2.97 -818.05 -2.43 -19.58 16 13 C 0.52 12.61 7.70 87.66 0.67 13.29 16 14 O -0.58 -16.42 15.39 -3.02 -0.05 -16.47 16 15 C -0.15 -2.29 4.16 29.85 0.12 -2.16 16 16 C 0.09 0.99 4.29 86.38 0.37 1.36 16 17 N -0.65 -9.74 5.31 -457.35 -2.43 -12.17 16 18 C 0.57 10.13 7.81 85.06 0.66 10.79 16 19 O -0.43 -5.19 13.12 -75.38 -0.99 -6.18 16 20 C -0.21 -5.14 6.61 40.54 0.27 -4.87 16 21 N -0.41 -9.68 10.05 -187.99 -1.89 -11.57 16 22 C 0.01 0.17 11.17 85.14 0.95 1.12 16 23 C -0.06 -1.00 10.04 22.17 0.22 -0.78 16 24 C -0.26 -6.02 10.09 22.54 0.23 -5.79 16 25 C 0.35 9.65 6.72 23.78 0.16 9.81 16 26 O -0.60 -18.64 14.44 -6.74 -0.10 -18.74 16 27 C 0.11 3.29 6.37 86.51 0.55 3.84 16 28 C -0.12 -4.83 5.17 30.82 0.16 -4.68 16 29 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 2.60 7.01 -2.39 -0.02 2.58 16 34 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.13 1.53 7.93 -2.38 -0.02 1.51 16 36 H 0.11 1.82 7.70 -2.39 -0.02 1.80 16 37 H 0.11 1.08 8.05 -2.39 -0.02 1.06 16 38 H 0.12 0.82 7.67 -2.39 -0.02 0.80 16 39 H 0.44 8.49 5.14 -93.56 -0.48 8.01 16 40 H 0.44 0.69 7.14 -74.06 -0.53 0.16 16 41 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 44 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.10 2.35 5.93 -2.39 -0.01 2.34 16 46 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.08 3.64 6.03 -2.39 -0.01 3.63 16 Total: -1.00 -73.45 382.89 0.14 -73.31 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.01 Total: 18.54 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.73 Total: -2.36 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -6.50 Total: -92.22 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.13 Total: -41.39 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.45 0.14 -73.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624986024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.126 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds