Wall clock time and date at job start Wed Apr 1 2020 04:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00686 * 2 1 4 4 H 1.48500 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46924 * 299.99993 * 3 2 1 6 6 H 1.48505 * 109.46852 * 59.99798 * 3 2 1 7 7 C 1.38656 * 119.99507 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00174 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.35757 * 116.99989 * 174.96652 * 9 7 2 11 11 C 1.38887 * 120.07024 * 5.32726 * 10 9 7 12 12 C 1.38078 * 119.93629 * 180.02562 * 11 10 9 13 13 C 1.38331 * 120.06345 * 0.02562 * 12 11 10 14 14 C 1.38278 * 120.13951 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.96464 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46859 * 90.00252 * 15 14 13 17 17 C 1.34778 * 119.99640 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99884 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00121 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.49877 * 59.92964 * 19 17 16 21 21 C 1.53041 * 109.49977 * 179.97438 * 19 17 16 22 22 C 1.53041 * 109.53436 * 181.35031 * 21 19 17 23 23 C 1.53189 * 109.31420 * 298.62837 * 22 21 19 24 24 N 1.46930 * 108.77221 * 54.64072 * 23 22 21 25 25 C 1.34777 * 120.62987 * 126.36664 * 24 23 22 26 26 N 1.34778 * 119.99644 * 174.36769 * 25 24 23 27 27 O 1.21580 * 120.00348 * 354.65053 * 25 24 23 28 28 C 1.46929 * 118.73898 * 306.63963 * 24 23 22 29 29 C 1.38125 * 120.06921 * 0.27373 * 14 13 12 30 30 H 0.97005 * 119.98950 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.03437 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.97066 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.92721 * 180.02562 * 13 12 11 34 34 H 1.09000 * 109.46860 * 330.00195 * 15 14 13 35 35 H 1.08998 * 109.46878 * 210.00070 * 15 14 13 36 36 H 0.96994 * 120.00317 * 359.97438 * 16 15 14 37 37 H 1.08998 * 109.45582 * 61.32891 * 21 19 17 38 38 H 1.08998 * 109.45741 * 301.36523 * 21 19 17 39 39 H 1.09002 * 109.49232 * 178.68237 * 22 21 19 40 40 H 1.08997 * 109.52598 * 58.60147 * 22 21 19 41 41 H 1.09002 * 109.59109 * 294.85609 * 23 22 21 42 42 H 1.08998 * 109.70792 * 174.49283 * 23 22 21 43 43 H 0.96997 * 120.00603 * 4.95248 * 26 25 24 44 44 H 0.97004 * 119.99791 * 184.94871 * 26 25 24 45 45 H 1.09000 * 109.58635 * 173.14359 * 28 24 23 46 46 H 1.09000 * 109.58754 * 293.57019 * 28 24 23 47 47 H 1.07997 * 120.03560 * 179.70445 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3461 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3685 -0.0005 10 6 2.0697 -3.5047 -0.1072 11 6 3.4570 -3.4393 -0.0986 12 6 4.2021 -4.5967 -0.2078 13 6 3.5681 -5.8204 -0.3262 14 6 2.1870 -5.8889 -0.3351 15 6 1.5004 -7.2242 -0.4636 16 7 1.2755 -7.7880 0.8697 17 6 0.6718 -8.9858 1.0018 18 8 0.3143 -9.5966 0.0168 19 6 0.4410 -9.5661 2.3733 20 1 -0.1856 -8.8893 2.9540 21 6 -0.2564 -10.9222 2.2434 22 6 -0.5214 -11.4968 3.6368 23 6 0.8123 -11.7066 4.3605 24 7 1.5540 -10.4382 4.3620 25 6 2.0127 -9.9123 5.5150 26 7 2.7877 -8.8099 5.4916 27 8 1.7316 -10.4353 6.5760 28 6 1.7810 -9.7510 3.0833 29 6 1.4362 -4.7342 -0.2313 30 1 -0.4849 0.8402 0.0004 31 1 3.9526 -2.4841 -0.0075 32 1 5.2809 -4.5464 -0.2016 33 1 4.1530 -6.7243 -0.4111 34 1 2.1280 -7.9011 -1.0433 35 1 0.5435 -7.0935 -0.9689 36 1 1.5618 -7.2997 1.6574 37 1 0.3814 -11.6063 1.6837 38 1 -1.2024 -10.7950 1.7171 39 1 -1.0391 -12.4516 3.5441 40 1 -1.1389 -10.8020 4.2060 41 1 1.3936 -12.4691 3.8420 42 1 0.6278 -12.0230 5.3871 43 1 2.9564 -8.3533 4.6526 44 1 3.1767 -8.4729 6.3138 45 1 2.2329 -8.7764 3.2674 46 1 2.4427 -10.3508 2.4585 47 1 0.3576 -4.7878 -0.2431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649702106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:08 Heat of formation + Delta-G solvation = -71.589262 kcal Electronic energy + Delta-G solvation = -29827.396775 eV Core-core repulsion = 25589.612557 eV Total energy + Delta-G solvation = -4237.784218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96591 -39.83555 -39.14129 -37.45393 -36.82890 -34.72968 -34.27744 -32.79150 -32.40978 -31.81567 -30.59525 -29.21079 -26.34501 -25.73217 -25.30663 -24.12771 -22.04849 -21.78465 -20.91352 -20.44523 -19.83795 -18.84372 -17.96309 -17.33398 -17.29655 -16.82787 -16.08308 -15.82201 -15.43345 -15.28344 -15.17555 -14.86179 -14.67035 -14.48005 -14.20499 -14.00442 -13.75600 -13.67538 -13.54418 -13.39027 -12.95774 -12.73336 -12.51521 -12.26214 -11.86855 -11.73749 -11.48083 -11.45734 -11.26363 -11.07528 -11.02403 -10.90741 -10.78606 -10.52285 -10.49147 -10.00023 -9.99210 -9.48596 -9.14997 -9.00081 -8.96246 -8.33881 -7.41851 -6.56069 -4.15727 1.79735 2.17322 2.31328 2.52677 2.87355 3.04036 3.06613 3.12165 3.20284 3.72817 3.86516 4.16228 4.36097 4.40532 4.49740 4.64869 4.78017 4.81359 4.89641 4.95715 5.00189 5.11926 5.17987 5.30488 5.43149 5.46133 5.49013 5.58299 5.63987 5.74821 5.81542 5.81863 5.97914 5.99447 6.02452 6.16103 6.32079 6.42003 6.46208 6.61253 6.72342 6.91344 7.08774 7.18461 7.27587 7.39358 7.48058 7.62126 7.87922 8.07368 8.28203 8.89401 9.57033 10.61595 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002169 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.431061 B =12908.287153 C =13623.419277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.196 4.196 14 C -0.074 4.074 15 C 0.167 3.833 16 N -0.719 5.719 17 C 0.517 3.483 18 O -0.537 6.537 19 C -0.124 4.124 20 H 0.103 0.897 21 C -0.098 4.098 22 C -0.136 4.136 23 C 0.126 3.874 24 N -0.626 5.626 25 C 0.711 3.289 26 N -0.867 5.867 27 O -0.593 6.593 28 C 0.123 3.877 29 C -0.172 4.172 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.397 0.603 44 H 0.415 0.585 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.941 -18.357 5.872 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.216 4.216 14 C -0.075 4.075 15 C 0.044 3.956 16 N -0.371 5.371 17 C 0.302 3.698 18 O -0.414 6.414 19 C -0.146 4.146 20 H 0.122 0.878 21 C -0.136 4.136 22 C -0.174 4.174 23 C 0.003 3.997 24 N -0.365 5.365 25 C 0.411 3.589 26 N -0.437 5.437 27 O -0.472 6.472 28 C -0.002 4.002 29 C -0.191 4.191 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.228 0.772 44 H 0.247 0.753 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.970 -19.041 5.786 20.293 hybrid contribution 0.933 1.781 0.136 2.015 sum 4.903 -17.260 5.922 18.895 Atomic orbital electron populations 1.70046 1.05996 1.27749 1.45609 1.25310 0.95858 0.98911 0.96392 0.85639 0.79116 0.80268 0.78363 1.19071 1.20051 1.20076 1.21373 0.91822 0.80707 1.53076 0.88949 1.83984 1.34331 1.11446 1.78099 1.19327 0.90265 0.88087 0.92688 1.21252 0.93842 0.99138 1.10242 1.20750 0.98577 0.92254 0.97811 1.20464 0.93281 0.97103 1.10740 1.19250 0.93483 0.92773 1.01968 1.20178 1.00223 0.91478 0.83690 1.46194 1.60634 1.20299 1.09931 1.20384 0.77508 0.81039 0.90834 1.90715 1.50414 1.60371 1.39861 1.21670 0.98800 0.99932 0.94209 0.87846 1.21331 1.01554 0.94055 0.96708 1.21975 0.97220 1.02209 0.96029 1.21558 0.91637 0.83751 1.02776 1.47215 1.59392 1.24850 1.05007 1.15825 0.78781 0.80608 0.83670 1.43198 1.55612 1.30520 1.14381 1.90957 1.63547 1.63770 1.28877 1.21459 0.95762 0.97814 0.85117 1.20090 0.99427 0.89859 1.09770 0.91929 0.85454 0.87284 0.87513 0.90813 0.90774 0.76408 0.90798 0.90504 0.90027 0.91231 0.91403 0.88568 0.77216 0.75270 0.89981 0.90341 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.34 13.67 55.48 0.76 -23.59 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.45 9.49 30.89 0.29 -10.15 16 8 H 0.09 2.26 5.20 -52.49 -0.27 1.98 16 9 O -0.18 -4.72 9.76 0.03 0.00 -4.72 16 10 C 0.15 3.32 6.65 -39.11 -0.26 3.06 16 11 C -0.23 -4.42 9.17 -39.40 -0.36 -4.79 16 12 C -0.08 -1.21 10.04 -39.61 -0.40 -1.61 16 13 C -0.20 -2.86 9.70 -39.53 -0.38 -3.25 16 14 C -0.07 -1.12 5.25 -104.65 -0.55 -1.67 16 15 C 0.17 2.14 5.80 -5.19 -0.03 2.11 16 16 N -0.72 -7.60 5.45 -61.47 -0.34 -7.94 16 17 C 0.52 5.68 7.16 -10.99 -0.08 5.60 16 18 O -0.54 -7.88 15.98 5.55 0.09 -7.79 16 19 C -0.12 -1.00 2.66 -91.87 -0.24 -1.24 16 20 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.10 -0.79 4.46 -26.69 -0.12 -0.91 16 22 C -0.14 -0.93 6.08 -26.61 -0.16 -1.09 16 23 C 0.13 0.96 6.44 -3.71 -0.02 0.94 16 24 N -0.63 -5.21 2.98 -178.76 -0.53 -5.74 16 25 C 0.71 7.39 8.57 -86.92 -0.74 6.64 16 26 N -0.87 -6.05 8.78 27.63 0.24 -5.80 16 27 O -0.59 -8.60 16.60 5.30 0.09 -8.51 16 28 C 0.12 0.83 5.50 -3.93 -0.02 0.80 16 29 C -0.17 -3.23 9.65 -39.39 -0.38 -3.61 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.13 2.54 5.64 -52.49 -0.30 2.24 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.40 3.57 8.00 -40.82 -0.33 3.24 16 37 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.87 6.99 -51.93 -0.36 0.50 16 43 H 0.40 1.91 6.33 -40.82 -0.26 1.65 16 44 H 0.42 2.53 8.93 -40.82 -0.36 2.16 16 45 H 0.08 0.41 5.26 -51.93 -0.27 0.14 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -33.93 388.09 -8.77 -42.70 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.35 Total: 9.08 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.56 Total: -8.19 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.13 Total: -43.06 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.18 Total: -21.02 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.93 -8.77 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.886 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds